Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS10545

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS10540 and RPSI07_RS10545 are separated by 531 nucleotidesRPSI07_RS10545 and RPSI07_RS10550 are separated by 72 nucleotides RPSI07_RS10540: RPSI07_RS10540 - TonB-denpendent receptor, at 564,826 to 566,925 _RS10540 RPSI07_RS10545: RPSI07_RS10545 - gamma-glutamyltransferase family protein, at 567,457 to 569,325 _RS10545 RPSI07_RS10550: RPSI07_RS10550 - TonB-dependent siderophore receptor, at 569,398 to 571,803 _RS10550 Position (kb) 567 568 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 566.477 kb on + strand, within RPSI07_RS10540at 566.477 kb on + strand, within RPSI07_RS10540at 566.478 kb on - strand, within RPSI07_RS10540at 566.478 kb on - strand, within RPSI07_RS10540at 566.492 kb on + strand, within RPSI07_RS10540at 566.492 kb on + strand, within RPSI07_RS10540at 566.492 kb on + strand, within RPSI07_RS10540at 566.541 kb on - strand, within RPSI07_RS10540at 566.541 kb on - strand, within RPSI07_RS10540at 566.639 kb on + strand, within RPSI07_RS10540at 566.640 kb on - strand, within RPSI07_RS10540at 566.753 kb on + strandat 566.753 kb on + strandat 566.754 kb on - strandat 566.967 kb on + strandat 566.967 kb on + strandat 566.967 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.066 kb on - strandat 567.066 kb on - strandat 567.066 kb on - strandat 567.066 kb on - strandat 567.761 kb on + strand, within RPSI07_RS10545at 567.818 kb on - strand, within RPSI07_RS10545at 567.818 kb on - strand, within RPSI07_RS10545at 567.845 kb on - strand, within RPSI07_RS10545at 568.132 kb on + strand, within RPSI07_RS10545at 568.133 kb on - strand, within RPSI07_RS10545at 568.240 kb on + strand, within RPSI07_RS10545at 568.240 kb on + strand, within RPSI07_RS10545at 568.240 kb on + strand, within RPSI07_RS10545at 568.240 kb on + strand, within RPSI07_RS10545at 568.240 kb on + strand, within RPSI07_RS10545at 568.240 kb on + strand, within RPSI07_RS10545at 568.241 kb on - strand, within RPSI07_RS10545at 568.241 kb on - strand, within RPSI07_RS10545at 568.364 kb on - strand, within RPSI07_RS10545at 568.364 kb on - strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.589 kb on - strand, within RPSI07_RS10545at 568.645 kb on + strand, within RPSI07_RS10545at 568.646 kb on - strand, within RPSI07_RS10545at 569.044 kb on + strand, within RPSI07_RS10545at 569.045 kb on - strand, within RPSI07_RS10545at 569.444 kb on + strandat 569.445 kb on + strandat 569.445 kb on - strandat 569.445 kb on - strandat 569.445 kb on - strandat 569.465 kb on + strandat 569.541 kb on - strandat 569.541 kb on - strandat 569.673 kb on - strand, within RPSI07_RS10550at 569.673 kb on - strand, within RPSI07_RS10550at 569.673 kb on - strand, within RPSI07_RS10550at 569.771 kb on + strand, within RPSI07_RS10550at 569.771 kb on + strand, within RPSI07_RS10550at 569.771 kb on + strand, within RPSI07_RS10550at 569.772 kb on - strand, within RPSI07_RS10550at 569.772 kb on - strand, within RPSI07_RS10550at 569.777 kb on + strand, within RPSI07_RS10550at 569.777 kb on + strand, within RPSI07_RS10550at 569.778 kb on - strand, within RPSI07_RS10550at 570.066 kb on - strand, within RPSI07_RS10550at 570.080 kb on + strand, within RPSI07_RS10550at 570.092 kb on + strand, within RPSI07_RS10550at 570.092 kb on + strand, within RPSI07_RS10550at 570.093 kb on - strand, within RPSI07_RS10550at 570.093 kb on - strand, within RPSI07_RS10550at 570.242 kb on + strand, within RPSI07_RS10550

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
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566,477 + RPSI07_RS10540 0.79 -0.8
566,477 + RPSI07_RS10540 0.79 +0.2
566,478 - RPSI07_RS10540 0.79 -1.4
566,478 - RPSI07_RS10540 0.79 +0.1
566,492 + RPSI07_RS10540 0.79 +0.4
566,492 + RPSI07_RS10540 0.79 -0.7
566,492 + RPSI07_RS10540 0.79 +0.2
566,541 - RPSI07_RS10540 0.82 -0.1
566,541 - RPSI07_RS10540 0.82 +1.5
566,639 + RPSI07_RS10540 0.86 -1.4
566,640 - RPSI07_RS10540 0.86 +1.3
566,753 + -1.4
566,753 + -2.6
566,754 - +0.9
566,967 + -0.0
566,967 + -0.7
566,967 + -0.3
567,065 + +0.3
567,065 + +1.8
567,065 + -2.6
567,065 + +0.3
567,065 + +0.7
567,066 - +0.3
567,066 - -0.8
567,066 - +1.4
567,066 - +0.0
567,761 + RPSI07_RS10545 0.16 +0.5
567,818 - RPSI07_RS10545 0.19 +0.3
567,818 - RPSI07_RS10545 0.19 -0.4
567,845 - RPSI07_RS10545 0.21 +0.2
568,132 + RPSI07_RS10545 0.36 +0.1
568,133 - RPSI07_RS10545 0.36 -0.0
568,240 + RPSI07_RS10545 0.42 +1.3
568,240 + RPSI07_RS10545 0.42 -1.0
568,240 + RPSI07_RS10545 0.42 +2.4
568,240 + RPSI07_RS10545 0.42 +0.3
568,240 + RPSI07_RS10545 0.42 -0.0
568,240 + RPSI07_RS10545 0.42 -0.7
568,241 - RPSI07_RS10545 0.42 +0.5
568,241 - RPSI07_RS10545 0.42 -1.5
568,364 - RPSI07_RS10545 0.49 +0.5
568,364 - RPSI07_RS10545 0.49 +0.0
568,588 + RPSI07_RS10545 0.61 +1.3
568,588 + RPSI07_RS10545 0.61 -1.0
568,588 + RPSI07_RS10545 0.61 -0.2
568,588 + RPSI07_RS10545 0.61 +0.6
568,588 + RPSI07_RS10545 0.61 -1.7
568,589 - RPSI07_RS10545 0.61 +0.4
568,645 + RPSI07_RS10545 0.64 -0.9
568,646 - RPSI07_RS10545 0.64 -0.5
569,044 + RPSI07_RS10545 0.85 -1.0
569,045 - RPSI07_RS10545 0.85 +0.3
569,444 + -0.6
569,445 + -0.4
569,445 - -1.7
569,445 - +0.3
569,445 - +0.0
569,465 + -0.1
569,541 - +1.9
569,541 - -1.4
569,673 - RPSI07_RS10550 0.11 +1.3
569,673 - RPSI07_RS10550 0.11 -1.5
569,673 - RPSI07_RS10550 0.11 +0.7
569,771 + RPSI07_RS10550 0.16 -1.0
569,771 + RPSI07_RS10550 0.16 +0.1
569,771 + RPSI07_RS10550 0.16 -0.6
569,772 - RPSI07_RS10550 0.16 +0.6
569,772 - RPSI07_RS10550 0.16 -0.1
569,777 + RPSI07_RS10550 0.16 -0.7
569,777 + RPSI07_RS10550 0.16 -1.2
569,778 - RPSI07_RS10550 0.16 -1.2
570,066 - RPSI07_RS10550 0.28 +0.2
570,080 + RPSI07_RS10550 0.28 +0.5
570,092 + RPSI07_RS10550 0.29 -0.7
570,092 + RPSI07_RS10550 0.29 -0.8
570,093 - RPSI07_RS10550 0.29 +1.1
570,093 - RPSI07_RS10550 0.29 +0.8
570,242 + RPSI07_RS10550 0.35 +1.5

Or see this region's nucleotide sequence