Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24675

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
1,835,473	-		RPSI07_RS06885	0.89	-1.8
1,835,473	-		RPSI07_RS06885	0.89	-0.8
1,835,473	-		RPSI07_RS06885	0.89	+0.7
1,835,664	+				+0.0
1,835,666	-				+1.0
1,835,705	+				-1.2
1,835,706	-				+1.0
1,835,706	-				+0.4
1,835,709	-				+0.5
1,835,709	-				-0.6
1,835,784	+		RPSI07_RS06890	0.17	+0.4
1,835,784	+		RPSI07_RS06890	0.17	-0.8
1,835,784	+		RPSI07_RS06890	0.17	-0.2
1,835,785	-		RPSI07_RS06890	0.17	+0.3
1,835,785	-		RPSI07_RS06890	0.17	-0.5
1,835,785	-		RPSI07_RS06890	0.17	-1.5
1,835,785	-		RPSI07_RS06890	0.17	-0.1
1,835,785	-		RPSI07_RS06890	0.17	-0.7
1,835,922	+		RPSI07_RS06890	0.39	+0.8
1,835,923	-		RPSI07_RS06890	0.39	-1.9
1,835,923	-		RPSI07_RS06890	0.39	-0.7
1,835,923	-		RPSI07_RS06890	0.39	-0.5
1,835,923	-		RPSI07_RS06890	0.39	-0.1
1,836,026	+		RPSI07_RS06890	0.56	+1.0
1,836,027	-		RPSI07_RS06890	0.56	-0.6
1,836,027	-		RPSI07_RS06890	0.56	-2.5
1,836,027	-		RPSI07_RS06890	0.56	-0.6
1,836,033	-		RPSI07_RS06890	0.57	-1.1
1,836,033	-		RPSI07_RS06890	0.57	-0.3
1,836,054	+		RPSI07_RS06890	0.61	-0.9
1,836,055	-		RPSI07_RS06890	0.61	-0.3
1,836,058	+		RPSI07_RS06890	0.61	-0.2
1,836,058	+		RPSI07_RS06890	0.61	-0.9
1,836,059	-		RPSI07_RS06890	0.62	-0.0
1,836,059	-		RPSI07_RS06890	0.62	-0.4
1,836,065	+		RPSI07_RS06890	0.63	+0.8
1,836,066	-		RPSI07_RS06890	0.63	+1.6
1,836,095	+		RPSI07_RS06890	0.67	-1.6
1,836,221	+		RPSI07_RS06890	0.88	+0.4
1,836,221	+		RPSI07_RS06890	0.88	+0.4
1,836,221	+		RPSI07_RS06890	0.88	-0.9
1,836,222	-		RPSI07_RS06890	0.88	+1.0
1,836,222	-		RPSI07_RS06890	0.88	-1.6
1,836,222	-		RPSI07_RS06890	0.88	-1.3
1,836,222	-		RPSI07_RS06890	0.88	-0.8
1,836,231	+		RPSI07_RS06890	0.90	-0.2
1,836,231	+		RPSI07_RS06890	0.90	-1.8
1,836,231	+		RPSI07_RS06890	0.90	-0.4
1,836,231	+		RPSI07_RS06890	0.90	-0.1
1,836,231	+		RPSI07_RS06890	0.90	+0.6
1,836,231	+		RPSI07_RS06890	0.90	+0.4
1,836,232	-				+0.5
1,836,232	-				+0.9
1,836,291	+				-0.5
1,836,291	+				+1.9
1,836,329	+				-0.3
1,836,329	+				-1.5
1,836,329	+				+0.1
1,836,329	+				+0.0
1,836,329	+				-0.6
1,836,330	-				+0.4
1,836,347	-				-0.4
1,836,393	+				+1.0
1,836,462	+				+0.2
1,836,462	+				-0.4
1,836,462	+				-0.5
1,836,494	+		RPSI07_RS24675	0.11	+0.5
1,836,494	+		RPSI07_RS24675	0.11	+0.5
1,836,495	-		RPSI07_RS24675	0.11	+0.6
1,836,495	-		RPSI07_RS24675	0.11	+0.0
1,836,683	+		RPSI07_RS24675	0.67	+1.0
1,836,683	+		RPSI07_RS24675	0.67	+0.3
1,836,683	+		RPSI07_RS24675	0.67	+0.0
1,836,684	-		RPSI07_RS24675	0.67	-0.6
1,836,684	-		RPSI07_RS24675	0.67	-0.4
1,836,684	-		RPSI07_RS24675	0.67	-1.0
1,836,684	-		RPSI07_RS24675	0.67	+1.2
1,836,684	-		RPSI07_RS24675	0.67	+0.6
1,836,684	-		RPSI07_RS24675	0.67	+1.5
1,836,684	-		RPSI07_RS24675	0.67	-1.8
1,836,684	-		RPSI07_RS24675	0.67	+0.1
1,836,692	+		RPSI07_RS24675	0.69	+0.3
1,836,692	+		RPSI07_RS24675	0.69	+0.5
1,836,692	+		RPSI07_RS24675	0.69	-1.1
1,836,692	+		RPSI07_RS24675	0.69	+1.0
1,836,693	-		RPSI07_RS24675	0.70	+0.0
1,836,793	+				+0.3
1,836,794	-				+0.2
1,836,794	-				-0.3
1,836,876	+				+0.0
1,836,876	+				-0.1
1,836,877	-				-1.3
1,836,877	-				+0.0
1,836,904	+				-0.6
1,836,904	+				-0.5
1,836,904	+				-1.5
1,836,904	+				+1.3
1,836,904	+				+0.9
1,836,905	-				+1.9
1,836,905	-				+0.2
1,836,979	+				-2.8
1,836,979	+				-0.0
1,836,979	+				-0.4
1,836,979	+				-1.5
1,836,979	+				+1.8
1,836,980	-				-0.2
1,836,980	-				+0.2
1,836,980	-				+0.2
1,836,980	-				-0.8
1,836,980	-				+1.2
1,836,980	-				+0.5
1,836,980	-				+0.6
1,836,980	-				+1.5
1,836,996	+				+1.0
1,836,996	+				-0.4
1,836,996	+				-2.3
1,836,996	+				+0.5
1,836,996	+				-0.2
1,836,997	-				-0.7
1,836,997	-				-0.5
1,836,997	-				+1.0
1,836,997	-				-1.6
1,837,044	+				-0.3
1,837,044	+				-0.3
1,837,045	-				+0.8
1,837,045	-				-1.3
1,837,045	-				-1.2
1,837,046	+				+0.1
1,837,046	+				-0.6
1,837,046	+				+0.1
1,837,046	+				-0.6
1,837,046	+				-1.2
1,837,046	+				-0.8
1,837,046	+				-0.1
1,837,046	+				-0.6
1,837,046	+				+0.9
1,837,046	+				+1.4
1,837,046	+				-1.0
1,837,046	+				+2.1
1,837,047	-				+0.5
1,837,047	-				-0.9
1,837,047	-				-0.3
1,837,047	-				-0.6
1,837,047	-				+0.5
1,837,047	-				-2.8
1,837,047	-				+0.2
1,837,047	-				-0.4
1,837,047	-				-0.4
1,837,047	-				+1.1
1,837,047	-				+0.3
1,837,047	-				-1.0
1,837,047	-				+0.9
1,837,047	-				-0.3
1,837,125	+				-0.5
1,837,126	-				+0.1
1,837,162	+				-1.5
1,837,162	+				-0.9
1,837,162	+				-0.1
1,837,194	+				-0.5
1,837,213	+				+1.0
1,837,213	+				+1.0
1,837,213	+				-2.3
1,837,213	+				+0.9
1,837,214	-				-0.6
1,837,251	+				+0.6
1,837,251	+				-1.3
1,837,251	+				+1.0
1,837,251	+				+1.7
1,837,252	-				-0.1
1,837,252	-				+1.0
1,837,252	-				-1.3
1,837,252	-				+3.5
1,837,281	+				-1.4
1,837,371	-				+0.8
1,837,386	+				-1.2
1,837,421	+				-0.3
1,837,439	+				-0.6
1,837,489	+				-0.6
1,837,489	+				+0.2
1,837,489	+				-0.5
1,837,489	+				-0.5
1,837,489	+				+0.4
1,837,489	+				-0.0
1,837,489	+				+0.2
1,837,489	+				-1.8
1,837,490	-				+1.3
1,837,490	-				+0.7
1,837,490	-				-0.9
1,837,490	-				-1.8
1,837,490	-				+3.0
1,837,491	+				-0.2
1,837,491	+				-1.0
1,837,491	+				+3.5
1,837,491	+				-0.0
1,837,491	+				-0.3
1,837,491	+				-0.0
1,837,491	+				+0.2
1,837,491	+				+0.0
1,837,491	+				-2.0
1,837,491	+				+0.2
1,837,491	+				-0.3
1,837,491	+				-0.2
1,837,492	-				+0.6
1,837,492	-				-2.2
1,837,492	-				+0.8
1,837,492	-				-0.5
1,837,492	-				+0.3
1,837,492	-				+0.7
1,837,492	-				+0.8
1,837,492	-				-0.5
1,837,492	-				+2.0
1,837,492	-				+0.4
1,837,492	-				+0.6
1,837,492	-				+0.0
1,837,492	-				+0.9
1,837,492	-				-0.6
1,837,506	+				-0.2
1,837,506	+				+0.1
1,837,506	+				-0.3
1,837,506	+				+0.2
1,837,608	+				+2.6
1,837,609	-				-1.0
1,837,609	-				+0.0
1,837,609	-				-1.8
1,837,615	+				-0.7
1,837,615	+				-1.0
1,837,615	+				+1.6
1,837,615	+				+0.8
1,837,615	+				+0.1
1,837,615	+				+0.3
1,837,616	-				-0.1
1,837,616	-				+2.1
1,837,616	-				+1.1
1,837,616	-				+0.8
1,837,657	+				-0.6
1,837,658	-				-0.5
1,837,658	-				-2.7
1,837,713	+				+0.3
1,837,714	-				-0.1
1,837,726	+				-0.3
1,837,734	+				-0.4
1,837,735	-				-1.4