Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17950

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17940 and RPSI07_RS17945 are separated by 12 nucleotidesRPSI07_RS17945 and RPSI07_RS17950 overlap by 4 nucleotidesRPSI07_RS17950 and RPSI07_RS17955 overlap by 4 nucleotides RPSI07_RS17940: RPSI07_RS17940 - putative addiction module antidote protein, at 2,231,344 to 2,231,631 _RS17940 RPSI07_RS17945: RPSI07_RS17945 - hypothetical protein, at 2,231,644 to 2,232,489 _RS17945 RPSI07_RS17950: RPSI07_RS17950 - hypothetical protein, at 2,232,486 to 2,233,523 _RS17950 RPSI07_RS17955: RPSI07_RS17955 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 2,233,520 to 2,234,809 _RS17955 Position (kb) 2232 2233 2234Strain fitness (log2 ratio) -2 -1 0 1 2at 2231.533 kb on + strand, within RPSI07_RS17940at 2231.533 kb on + strand, within RPSI07_RS17940at 2231.645 kb on + strandat 2231.765 kb on + strand, within RPSI07_RS17945at 2232.206 kb on + strand, within RPSI07_RS17945at 2232.601 kb on + strand, within RPSI07_RS17950at 2232.618 kb on + strand, within RPSI07_RS17950at 2232.619 kb on + strand, within RPSI07_RS17950at 2232.619 kb on + strand, within RPSI07_RS17950at 2232.620 kb on - strand, within RPSI07_RS17950at 2232.620 kb on - strand, within RPSI07_RS17950at 2232.675 kb on - strand, within RPSI07_RS17950at 2232.748 kb on + strand, within RPSI07_RS17950at 2232.748 kb on + strand, within RPSI07_RS17950at 2232.748 kb on + strand, within RPSI07_RS17950at 2232.749 kb on - strand, within RPSI07_RS17950at 2232.749 kb on - strand, within RPSI07_RS17950at 2232.778 kb on + strand, within RPSI07_RS17950at 2232.998 kb on - strand, within RPSI07_RS17950at 2233.169 kb on - strand, within RPSI07_RS17950at 2233.406 kb on - strand, within RPSI07_RS17950at 2233.804 kb on + strand, within RPSI07_RS17955at 2233.804 kb on + strand, within RPSI07_RS17955at 2233.804 kb on + strand, within RPSI07_RS17955at 2233.804 kb on + strand, within RPSI07_RS17955at 2233.805 kb on - strand, within RPSI07_RS17955at 2233.805 kb on - strand, within RPSI07_RS17955at 2233.812 kb on + strand, within RPSI07_RS17955at 2233.974 kb on + strand, within RPSI07_RS17955at 2233.974 kb on + strand, within RPSI07_RS17955at 2233.974 kb on + strand, within RPSI07_RS17955at 2233.974 kb on + strand, within RPSI07_RS17955at 2233.975 kb on - strand, within RPSI07_RS17955at 2234.357 kb on + strandat 2234.358 kb on - strand, within RPSI07_RS17955at 2234.358 kb on - strand, within RPSI07_RS17955at 2234.496 kb on + strand, within RPSI07_RS17955

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
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2,231,533 + RPSI07_RS17940 0.66 +0.3
2,231,533 + RPSI07_RS17940 0.66 +0.5
2,231,645 + -0.1
2,231,765 + RPSI07_RS17945 0.14 -0.9
2,232,206 + RPSI07_RS17945 0.66 +0.7
2,232,601 + RPSI07_RS17950 0.11 -0.7
2,232,618 + RPSI07_RS17950 0.13 -0.6
2,232,619 + RPSI07_RS17950 0.13 +0.8
2,232,619 + RPSI07_RS17950 0.13 -0.7
2,232,620 - RPSI07_RS17950 0.13 +0.1
2,232,620 - RPSI07_RS17950 0.13 -0.1
2,232,675 - RPSI07_RS17950 0.18 +1.0
2,232,748 + RPSI07_RS17950 0.25 -0.7
2,232,748 + RPSI07_RS17950 0.25 -2.7
2,232,748 + RPSI07_RS17950 0.25 -1.4
2,232,749 - RPSI07_RS17950 0.25 -0.2
2,232,749 - RPSI07_RS17950 0.25 -0.3
2,232,778 + RPSI07_RS17950 0.28 -1.5
2,232,998 - RPSI07_RS17950 0.49 -0.6
2,233,169 - RPSI07_RS17950 0.66 +1.2
2,233,406 - RPSI07_RS17950 0.89 -1.8
2,233,804 + RPSI07_RS17955 0.22 +0.1
2,233,804 + RPSI07_RS17955 0.22 +0.7
2,233,804 + RPSI07_RS17955 0.22 +0.6
2,233,804 + RPSI07_RS17955 0.22 -0.2
2,233,805 - RPSI07_RS17955 0.22 +0.2
2,233,805 - RPSI07_RS17955 0.22 -0.2
2,233,812 + RPSI07_RS17955 0.23 -0.4
2,233,974 + RPSI07_RS17955 0.35 -1.2
2,233,974 + RPSI07_RS17955 0.35 +2.1
2,233,974 + RPSI07_RS17955 0.35 +0.6
2,233,974 + RPSI07_RS17955 0.35 -0.5
2,233,975 - RPSI07_RS17955 0.35 +0.3
2,234,357 + +1.1
2,234,358 - RPSI07_RS17955 0.65 -0.4
2,234,358 - RPSI07_RS17955 0.65 -0.9
2,234,496 + RPSI07_RS17955 0.76 -0.1

Or see this region's nucleotide sequence