Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04050

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04045 and RPSI07_RS04050 are separated by 20 nucleotidesRPSI07_RS04050 and RPSI07_RS04055 overlap by 4 nucleotides RPSI07_RS04045: RPSI07_RS04045 - TonB-dependent receptor, at 1,099,723 to 1,101,642 _RS04045 RPSI07_RS04050: RPSI07_RS04050 - hypothetical protein, at 1,101,663 to 1,102,124 _RS04050 RPSI07_RS04055: RPSI07_RS04055 - hypothetical protein, at 1,102,121 to 1,103,317 _RS04055 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1100.777 kb on + strand, within RPSI07_RS04045at 1100.777 kb on + strand, within RPSI07_RS04045at 1100.777 kb on + strand, within RPSI07_RS04045at 1100.778 kb on - strand, within RPSI07_RS04045at 1100.778 kb on - strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.852 kb on + strand, within RPSI07_RS04045at 1100.853 kb on - strand, within RPSI07_RS04045at 1100.853 kb on - strand, within RPSI07_RS04045at 1100.918 kb on + strand, within RPSI07_RS04045at 1100.918 kb on + strand, within RPSI07_RS04045at 1100.918 kb on + strand, within RPSI07_RS04045at 1101.047 kb on + strand, within RPSI07_RS04045at 1101.047 kb on + strand, within RPSI07_RS04045at 1101.047 kb on + strand, within RPSI07_RS04045at 1101.047 kb on + strand, within RPSI07_RS04045at 1101.047 kb on + strand, within RPSI07_RS04045at 1101.047 kb on + strand, within RPSI07_RS04045at 1101.048 kb on - strand, within RPSI07_RS04045at 1101.048 kb on - strand, within RPSI07_RS04045at 1101.048 kb on - strand, within RPSI07_RS04045at 1101.048 kb on - strand, within RPSI07_RS04045at 1101.048 kb on - strand, within RPSI07_RS04045at 1101.215 kb on + strand, within RPSI07_RS04045at 1101.216 kb on - strand, within RPSI07_RS04045at 1101.216 kb on - strand, within RPSI07_RS04045at 1101.284 kb on + strand, within RPSI07_RS04045at 1101.284 kb on + strand, within RPSI07_RS04045at 1101.284 kb on + strand, within RPSI07_RS04045at 1101.284 kb on + strand, within RPSI07_RS04045at 1101.284 kb on + strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.285 kb on - strand, within RPSI07_RS04045at 1101.292 kb on + strand, within RPSI07_RS04045at 1101.293 kb on - strand, within RPSI07_RS04045at 1101.303 kb on + strand, within RPSI07_RS04045at 1101.303 kb on + strand, within RPSI07_RS04045at 1101.304 kb on - strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.305 kb on + strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.306 kb on - strand, within RPSI07_RS04045at 1101.398 kb on + strand, within RPSI07_RS04045at 1101.398 kb on + strand, within RPSI07_RS04045at 1101.398 kb on + strand, within RPSI07_RS04045at 1101.398 kb on + strand, within RPSI07_RS04045at 1101.399 kb on - strand, within RPSI07_RS04045at 1101.399 kb on - strand, within RPSI07_RS04045at 1101.619 kb on + strandat 1101.994 kb on + strand, within RPSI07_RS04050at 1101.994 kb on + strand, within RPSI07_RS04050at 1101.995 kb on - strand, within RPSI07_RS04050at 1101.995 kb on - strand, within RPSI07_RS04050at 1101.995 kb on - strand, within RPSI07_RS04050at 1102.017 kb on + strand, within RPSI07_RS04050at 1102.017 kb on + strand, within RPSI07_RS04050at 1102.017 kb on + strand, within RPSI07_RS04050at 1102.018 kb on - strand, within RPSI07_RS04050at 1102.090 kb on - strandat 1102.285 kb on - strand, within RPSI07_RS04055at 1102.341 kb on + strand, within RPSI07_RS04055at 1102.342 kb on - strand, within RPSI07_RS04055at 1102.349 kb on - strand, within RPSI07_RS04055at 1102.557 kb on + strand, within RPSI07_RS04055at 1102.652 kb on + strand, within RPSI07_RS04055at 1102.652 kb on + strand, within RPSI07_RS04055at 1102.653 kb on - strand, within RPSI07_RS04055at 1102.878 kb on + strand, within RPSI07_RS04055at 1102.878 kb on - strand, within RPSI07_RS04055at 1102.879 kb on - strand, within RPSI07_RS04055at 1102.879 kb on - strand, within RPSI07_RS04055at 1102.879 kb on - strand, within RPSI07_RS04055at 1102.964 kb on + strand, within RPSI07_RS04055at 1102.966 kb on - strand, within RPSI07_RS04055

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
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1,100,777 + RPSI07_RS04045 0.55 +1.1
1,100,777 + RPSI07_RS04045 0.55 +0.1
1,100,777 + RPSI07_RS04045 0.55 +2.5
1,100,778 - RPSI07_RS04045 0.55 +1.8
1,100,778 - RPSI07_RS04045 0.55 -0.1
1,100,852 + RPSI07_RS04045 0.59 -0.5
1,100,852 + RPSI07_RS04045 0.59 -0.1
1,100,852 + RPSI07_RS04045 0.59 +1.5
1,100,852 + RPSI07_RS04045 0.59 +0.9
1,100,852 + RPSI07_RS04045 0.59 -2.1
1,100,852 + RPSI07_RS04045 0.59 +2.9
1,100,852 + RPSI07_RS04045 0.59 -0.6
1,100,852 + RPSI07_RS04045 0.59 +2.0
1,100,852 + RPSI07_RS04045 0.59 +1.9
1,100,852 + RPSI07_RS04045 0.59 -1.9
1,100,853 - RPSI07_RS04045 0.59 -1.4
1,100,853 - RPSI07_RS04045 0.59 +2.7
1,100,918 + RPSI07_RS04045 0.62 -0.7
1,100,918 + RPSI07_RS04045 0.62 -0.4
1,100,918 + RPSI07_RS04045 0.62 +1.1
1,101,047 + RPSI07_RS04045 0.69 +0.9
1,101,047 + RPSI07_RS04045 0.69 -0.5
1,101,047 + RPSI07_RS04045 0.69 +0.2
1,101,047 + RPSI07_RS04045 0.69 -1.6
1,101,047 + RPSI07_RS04045 0.69 -0.7
1,101,047 + RPSI07_RS04045 0.69 -0.6
1,101,048 - RPSI07_RS04045 0.69 +0.2
1,101,048 - RPSI07_RS04045 0.69 +1.5
1,101,048 - RPSI07_RS04045 0.69 +0.9
1,101,048 - RPSI07_RS04045 0.69 +0.2
1,101,048 - RPSI07_RS04045 0.69 -0.4
1,101,215 + RPSI07_RS04045 0.78 +0.2
1,101,216 - RPSI07_RS04045 0.78 +0.5
1,101,216 - RPSI07_RS04045 0.78 -0.6
1,101,284 + RPSI07_RS04045 0.81 -3.0
1,101,284 + RPSI07_RS04045 0.81 -1.0
1,101,284 + RPSI07_RS04045 0.81 -0.3
1,101,284 + RPSI07_RS04045 0.81 -0.4
1,101,284 + RPSI07_RS04045 0.81 -0.7
1,101,285 - RPSI07_RS04045 0.81 +0.7
1,101,285 - RPSI07_RS04045 0.81 -1.8
1,101,285 - RPSI07_RS04045 0.81 +1.9
1,101,285 - RPSI07_RS04045 0.81 +2.2
1,101,285 - RPSI07_RS04045 0.81 +0.8
1,101,285 - RPSI07_RS04045 0.81 -0.4
1,101,285 - RPSI07_RS04045 0.81 -0.8
1,101,285 - RPSI07_RS04045 0.81 +0.5
1,101,285 - RPSI07_RS04045 0.81 +0.3
1,101,285 - RPSI07_RS04045 0.81 +0.4
1,101,285 - RPSI07_RS04045 0.81 +1.9
1,101,285 - RPSI07_RS04045 0.81 -1.9
1,101,285 - RPSI07_RS04045 0.81 -0.8
1,101,285 - RPSI07_RS04045 0.81 -0.4
1,101,285 - RPSI07_RS04045 0.81 +1.1
1,101,285 - RPSI07_RS04045 0.81 -0.3
1,101,285 - RPSI07_RS04045 0.81 -0.6
1,101,292 + RPSI07_RS04045 0.82 +0.1
1,101,293 - RPSI07_RS04045 0.82 -0.6
1,101,303 + RPSI07_RS04045 0.82 +1.6
1,101,303 + RPSI07_RS04045 0.82 -0.1
1,101,304 - RPSI07_RS04045 0.82 -0.7
1,101,305 + RPSI07_RS04045 0.82 +0.5
1,101,305 + RPSI07_RS04045 0.82 -1.2
1,101,305 + RPSI07_RS04045 0.82 +0.3
1,101,305 + RPSI07_RS04045 0.82 -1.1
1,101,305 + RPSI07_RS04045 0.82 +0.8
1,101,305 + RPSI07_RS04045 0.82 +0.1
1,101,305 + RPSI07_RS04045 0.82 +0.2
1,101,305 + RPSI07_RS04045 0.82 -0.3
1,101,305 + RPSI07_RS04045 0.82 -0.7
1,101,305 + RPSI07_RS04045 0.82 +0.3
1,101,305 + RPSI07_RS04045 0.82 -0.5
1,101,305 + RPSI07_RS04045 0.82 +0.4
1,101,305 + RPSI07_RS04045 0.82 -0.8
1,101,306 - RPSI07_RS04045 0.82 -0.1
1,101,306 - RPSI07_RS04045 0.82 +0.9
1,101,306 - RPSI07_RS04045 0.82 -0.2
1,101,306 - RPSI07_RS04045 0.82 -0.1
1,101,306 - RPSI07_RS04045 0.82 -0.5
1,101,306 - RPSI07_RS04045 0.82 +0.9
1,101,306 - RPSI07_RS04045 0.82 +0.1
1,101,306 - RPSI07_RS04045 0.82 -1.2
1,101,306 - RPSI07_RS04045 0.82 -0.4
1,101,306 - RPSI07_RS04045 0.82 -0.5
1,101,306 - RPSI07_RS04045 0.82 +0.8
1,101,306 - RPSI07_RS04045 0.82 +1.5
1,101,398 + RPSI07_RS04045 0.87 -1.6
1,101,398 + RPSI07_RS04045 0.87 -0.0
1,101,398 + RPSI07_RS04045 0.87 +0.7
1,101,398 + RPSI07_RS04045 0.87 +2.7
1,101,399 - RPSI07_RS04045 0.87 -1.1
1,101,399 - RPSI07_RS04045 0.87 +1.1
1,101,619 + +0.9
1,101,994 + RPSI07_RS04050 0.72 -0.9
1,101,994 + RPSI07_RS04050 0.72 +0.9
1,101,995 - RPSI07_RS04050 0.72 -1.6
1,101,995 - RPSI07_RS04050 0.72 -0.7
1,101,995 - RPSI07_RS04050 0.72 -2.1
1,102,017 + RPSI07_RS04050 0.77 +0.4
1,102,017 + RPSI07_RS04050 0.77 +0.5
1,102,017 + RPSI07_RS04050 0.77 -0.6
1,102,018 - RPSI07_RS04050 0.77 -0.8
1,102,090 - +0.5
1,102,285 - RPSI07_RS04055 0.14 -0.6
1,102,341 + RPSI07_RS04055 0.18 -0.7
1,102,342 - RPSI07_RS04055 0.18 +0.3
1,102,349 - RPSI07_RS04055 0.19 -0.9
1,102,557 + RPSI07_RS04055 0.36 -0.9
1,102,652 + RPSI07_RS04055 0.44 -1.5
1,102,652 + RPSI07_RS04055 0.44 +1.2
1,102,653 - RPSI07_RS04055 0.44 -2.9
1,102,878 + RPSI07_RS04055 0.63 -0.1
1,102,878 - RPSI07_RS04055 0.63 -0.7
1,102,879 - RPSI07_RS04055 0.63 -1.1
1,102,879 - RPSI07_RS04055 0.63 +1.6
1,102,879 - RPSI07_RS04055 0.63 -0.7
1,102,964 + RPSI07_RS04055 0.70 +0.1
1,102,966 - RPSI07_RS04055 0.71 +0.8

Or see this region's nucleotide sequence