Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24790

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS07415 and RPSI07_RS24790 are separated by 115 nucleotidesRPSI07_RS24790 and RPSI07_RS07420 are separated by 236 nucleotidesRPSI07_RS07420 and RPSI07_RS07425 are separated by 110 nucleotides RPSI07_RS07415: RPSI07_RS07415 - catalase, at 1,963,692 to 1,965,221 _RS07415 RPSI07_RS24790: RPSI07_RS24790 - hypothetical protein, at 1,965,337 to 1,965,561 _RS24790 RPSI07_RS07420: RPSI07_RS07420 - hypothetical protein, at 1,965,798 to 1,966,418 _RS07420 RPSI07_RS07425: RPSI07_RS07425 - aminotransferase class V-fold PLP-dependent enzyme, at 1,966,529 to 1,967,764 _RS07425 Position (kb) 1965 1966Strain fitness (log2 ratio) -2 -1 0 1 2at 1964.383 kb on + strand, within RPSI07_RS07415at 1964.383 kb on + strand, within RPSI07_RS07415at 1964.383 kb on + strand, within RPSI07_RS07415at 1964.383 kb on + strand, within RPSI07_RS07415at 1964.383 kb on + strand, within RPSI07_RS07415at 1964.383 kb on + strand, within RPSI07_RS07415at 1964.384 kb on - strand, within RPSI07_RS07415at 1964.384 kb on - strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.530 kb on + strand, within RPSI07_RS07415at 1964.531 kb on - strand, within RPSI07_RS07415at 1964.531 kb on - strand, within RPSI07_RS07415at 1964.531 kb on - strand, within RPSI07_RS07415at 1964.531 kb on - strand, within RPSI07_RS07415at 1964.563 kb on + strand, within RPSI07_RS07415at 1964.563 kb on + strand, within RPSI07_RS07415at 1964.563 kb on + strand, within RPSI07_RS07415at 1964.563 kb on + strand, within RPSI07_RS07415at 1964.563 kb on + strand, within RPSI07_RS07415at 1964.563 kb on + strand, within RPSI07_RS07415at 1964.564 kb on - strand, within RPSI07_RS07415at 1964.564 kb on - strand, within RPSI07_RS07415at 1964.564 kb on - strand, within RPSI07_RS07415at 1964.596 kb on + strand, within RPSI07_RS07415at 1964.597 kb on - strand, within RPSI07_RS07415at 1964.614 kb on + strand, within RPSI07_RS07415at 1964.623 kb on + strand, within RPSI07_RS07415at 1964.623 kb on + strand, within RPSI07_RS07415at 1964.623 kb on + strand, within RPSI07_RS07415at 1964.623 kb on + strand, within RPSI07_RS07415at 1964.624 kb on - strand, within RPSI07_RS07415at 1964.624 kb on - strand, within RPSI07_RS07415at 1964.624 kb on - strand, within RPSI07_RS07415at 1964.677 kb on + strand, within RPSI07_RS07415at 1964.812 kb on + strand, within RPSI07_RS07415at 1964.812 kb on + strand, within RPSI07_RS07415at 1964.813 kb on - strand, within RPSI07_RS07415at 1964.974 kb on + strand, within RPSI07_RS07415at 1965.186 kb on + strandat 1965.187 kb on - strandat 1965.257 kb on - strandat 1965.257 kb on - strandat 1965.345 kb on + strandat 1965.376 kb on - strand, within RPSI07_RS24790at 1965.522 kb on + strand, within RPSI07_RS24790at 1965.522 kb on + strand, within RPSI07_RS24790at 1965.523 kb on - strand, within RPSI07_RS24790at 1965.533 kb on + strand, within RPSI07_RS24790at 1965.534 kb on - strand, within RPSI07_RS24790at 1965.751 kb on + strandat 1965.751 kb on + strandat 1965.752 kb on - strandat 1965.752 kb on - strandat 1965.752 kb on - strandat 1965.786 kb on + strandat 1965.786 kb on + strandat 1965.786 kb on + strandat 1965.787 kb on - strandat 1965.787 kb on - strandat 1965.787 kb on - strandat 1965.819 kb on - strandat 1965.828 kb on + strandat 1965.829 kb on - strandat 1965.829 kb on - strandat 1965.829 kb on - strandat 1965.873 kb on + strand, within RPSI07_RS07420at 1965.933 kb on + strand, within RPSI07_RS07420at 1965.933 kb on + strand, within RPSI07_RS07420at 1965.934 kb on - strand, within RPSI07_RS07420at 1965.934 kb on - strand, within RPSI07_RS07420at 1966.001 kb on + strand, within RPSI07_RS07420at 1966.001 kb on + strand, within RPSI07_RS07420at 1966.002 kb on - strand, within RPSI07_RS07420at 1966.002 kb on - strand, within RPSI07_RS07420at 1966.035 kb on + strand, within RPSI07_RS07420at 1966.035 kb on + strand, within RPSI07_RS07420at 1966.056 kb on + strand, within RPSI07_RS07420at 1966.056 kb on + strand, within RPSI07_RS07420at 1966.056 kb on + strand, within RPSI07_RS07420at 1966.056 kb on + strand, within RPSI07_RS07420at 1966.057 kb on - strand, within RPSI07_RS07420at 1966.257 kb on + strand, within RPSI07_RS07420at 1966.258 kb on - strand, within RPSI07_RS07420at 1966.258 kb on - strand, within RPSI07_RS07420at 1966.372 kb on + strandat 1966.372 kb on + strandat 1966.372 kb on + strandat 1966.372 kb on + strandat 1966.372 kb on + strandat 1966.372 kb on + strandat 1966.372 kb on + strandat 1966.373 kb on - strandat 1966.416 kb on + strandat 1966.416 kb on + strandat 1966.416 kb on + strandat 1966.417 kb on - strandat 1966.417 kb on - strandat 1966.417 kb on - strandat 1966.417 kb on - strandat 1966.417 kb on - strandat 1966.417 kb on - strandat 1966.420 kb on + strandat 1966.420 kb on + strandat 1966.421 kb on - strandat 1966.525 kb on + strandat 1966.525 kb on + strandat 1966.526 kb on - strandat 1966.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
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1,964,383 + RPSI07_RS07415 0.45 -1.2
1,964,383 + RPSI07_RS07415 0.45 -1.2
1,964,383 + RPSI07_RS07415 0.45 -1.9
1,964,383 + RPSI07_RS07415 0.45 +1.4
1,964,383 + RPSI07_RS07415 0.45 -0.9
1,964,383 + RPSI07_RS07415 0.45 -0.1
1,964,384 - RPSI07_RS07415 0.45 +0.9
1,964,384 - RPSI07_RS07415 0.45 +0.9
1,964,530 + RPSI07_RS07415 0.55 -0.3
1,964,530 + RPSI07_RS07415 0.55 -2.3
1,964,530 + RPSI07_RS07415 0.55 +1.3
1,964,530 + RPSI07_RS07415 0.55 -0.6
1,964,530 + RPSI07_RS07415 0.55 -0.4
1,964,530 + RPSI07_RS07415 0.55 -0.1
1,964,530 + RPSI07_RS07415 0.55 -0.7
1,964,530 + RPSI07_RS07415 0.55 +0.7
1,964,530 + RPSI07_RS07415 0.55 -0.1
1,964,531 - RPSI07_RS07415 0.55 -0.8
1,964,531 - RPSI07_RS07415 0.55 +1.2
1,964,531 - RPSI07_RS07415 0.55 +2.2
1,964,531 - RPSI07_RS07415 0.55 -1.1
1,964,563 + RPSI07_RS07415 0.57 +0.5
1,964,563 + RPSI07_RS07415 0.57 +0.0
1,964,563 + RPSI07_RS07415 0.57 +1.9
1,964,563 + RPSI07_RS07415 0.57 +0.3
1,964,563 + RPSI07_RS07415 0.57 -0.3
1,964,563 + RPSI07_RS07415 0.57 -0.5
1,964,564 - RPSI07_RS07415 0.57 -1.2
1,964,564 - RPSI07_RS07415 0.57 -0.5
1,964,564 - RPSI07_RS07415 0.57 -1.6
1,964,596 + RPSI07_RS07415 0.59 -0.2
1,964,597 - RPSI07_RS07415 0.59 +0.9
1,964,614 + RPSI07_RS07415 0.60 +0.7
1,964,623 + RPSI07_RS07415 0.61 +0.2
1,964,623 + RPSI07_RS07415 0.61 +1.4
1,964,623 + RPSI07_RS07415 0.61 -0.4
1,964,623 + RPSI07_RS07415 0.61 -0.8
1,964,624 - RPSI07_RS07415 0.61 -0.0
1,964,624 - RPSI07_RS07415 0.61 +0.7
1,964,624 - RPSI07_RS07415 0.61 +0.1
1,964,677 + RPSI07_RS07415 0.64 +1.0
1,964,812 + RPSI07_RS07415 0.73 +0.7
1,964,812 + RPSI07_RS07415 0.73 -0.2
1,964,813 - RPSI07_RS07415 0.73 -0.0
1,964,974 + RPSI07_RS07415 0.84 +0.2
1,965,186 + -0.3
1,965,187 - +0.5
1,965,257 - -1.1
1,965,257 - -0.7
1,965,345 + +0.3
1,965,376 - RPSI07_RS24790 0.17 -2.1
1,965,522 + RPSI07_RS24790 0.82 +0.6
1,965,522 + RPSI07_RS24790 0.82 -1.2
1,965,523 - RPSI07_RS24790 0.83 -0.1
1,965,533 + RPSI07_RS24790 0.87 +0.8
1,965,534 - RPSI07_RS24790 0.88 -0.2
1,965,751 + +0.6
1,965,751 + +0.7
1,965,752 - +0.3
1,965,752 - +0.9
1,965,752 - +0.5
1,965,786 + +1.2
1,965,786 + -0.2
1,965,786 + -0.1
1,965,787 - +0.1
1,965,787 - +0.3
1,965,787 - -0.9
1,965,819 - -1.2
1,965,828 + +1.8
1,965,829 - -1.0
1,965,829 - +0.4
1,965,829 - +0.5
1,965,873 + RPSI07_RS07420 0.12 +0.1
1,965,933 + RPSI07_RS07420 0.22 -1.8
1,965,933 + RPSI07_RS07420 0.22 -1.0
1,965,934 - RPSI07_RS07420 0.22 -0.2
1,965,934 - RPSI07_RS07420 0.22 -0.1
1,966,001 + RPSI07_RS07420 0.33 +1.4
1,966,001 + RPSI07_RS07420 0.33 +0.2
1,966,002 - RPSI07_RS07420 0.33 -0.4
1,966,002 - RPSI07_RS07420 0.33 -1.0
1,966,035 + RPSI07_RS07420 0.38 -1.8
1,966,035 + RPSI07_RS07420 0.38 -0.0
1,966,056 + RPSI07_RS07420 0.42 -0.6
1,966,056 + RPSI07_RS07420 0.42 +0.9
1,966,056 + RPSI07_RS07420 0.42 -2.4
1,966,056 + RPSI07_RS07420 0.42 +0.6
1,966,057 - RPSI07_RS07420 0.42 +2.5
1,966,257 + RPSI07_RS07420 0.74 -1.6
1,966,258 - RPSI07_RS07420 0.74 -0.1
1,966,258 - RPSI07_RS07420 0.74 +1.9
1,966,372 + +1.3
1,966,372 + -1.2
1,966,372 + -0.0
1,966,372 + +0.0
1,966,372 + +2.1
1,966,372 + -0.9
1,966,372 + +0.7
1,966,373 - +0.0
1,966,416 + +0.0
1,966,416 + +2.3
1,966,416 + -0.9
1,966,417 - -0.5
1,966,417 - +1.2
1,966,417 - +0.8
1,966,417 - -0.9
1,966,417 - +0.6
1,966,417 - +0.9
1,966,420 + +1.9
1,966,420 + -2.5
1,966,421 - -0.7
1,966,525 + -0.7
1,966,525 + -0.7
1,966,526 - -1.9
1,966,526 - +0.6

Or see this region's nucleotide sequence