Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS10640

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS10635 and RPSI07_RS10640 are separated by 103 nucleotidesRPSI07_RS10640 and RPSI07_RS10645 are separated by 190 nucleotides RPSI07_RS10635: RPSI07_RS10635 - peptide chain release factor N(5)-glutamine methyltransferase, at 590,458 to 591,345 _RS10635 RPSI07_RS10640: RPSI07_RS10640 - hypothetical protein, at 591,449 to 591,781 _RS10640 RPSI07_RS10645: RPSI07_RS10645 - peptide chain release factor 1, at 591,972 to 593,054 _RS10645 Position (kb) 591 592Strain fitness (log2 ratio) -2 -1 0 1 2at 591.281 kb on - strandat 591.383 kb on + strandat 591.768 kb on - strandat 591.793 kb on + strandat 591.799 kb on + strandat 591.800 kb on - strandat 591.889 kb on + strandat 591.889 kb on + strandat 591.889 kb on + strandat 591.890 kb on - strandat 591.890 kb on - strandat 591.890 kb on - strandat 591.891 kb on + strandat 591.948 kb on + strandat 591.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
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591,281 - -2.0
591,383 + -0.6
591,768 - -0.8
591,793 + +1.2
591,799 + +0.2
591,800 - -0.0
591,889 + +1.8
591,889 + -0.5
591,889 + -0.4
591,890 - +1.1
591,890 - -0.3
591,890 - -0.5
591,891 + -1.4
591,948 + -0.6
591,949 - +0.2

Or see this region's nucleotide sequence