Experiment: SMSA with Ralstonia_antibiotic_mix
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS24030 and RPSI07_RS02065 are separated by 465 nucleotides
RPSI07_RS24030: RPSI07_RS24030 - hypothetical protein, at 606,733 to 607,430
_RS24030
RPSI07_RS02065: RPSI07_RS02065 - hemagglutinin, at 607,896 to 617,003
_RS02065
Position (kb) 607
608
609
610
611
612
613
614
615
616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 607.010 kb on - strand, within RPSI07_RS24030 at 607.109 kb on + strand, within RPSI07_RS24030 at 607.109 kb on + strand, within RPSI07_RS24030 at 607.135 kb on + strand, within RPSI07_RS24030 at 607.135 kb on + strand, within RPSI07_RS24030 at 607.136 kb on - strand, within RPSI07_RS24030 at 607.136 kb on - strand, within RPSI07_RS24030 at 607.136 kb on - strand, within RPSI07_RS24030 at 607.145 kb on + strand, within RPSI07_RS24030 at 607.145 kb on + strand, within RPSI07_RS24030 at 607.145 kb on + strand, within RPSI07_RS24030 at 607.145 kb on + strand, within RPSI07_RS24030 at 607.146 kb on - strand, within RPSI07_RS24030 at 607.230 kb on + strand, within RPSI07_RS24030 at 607.231 kb on - strand, within RPSI07_RS24030 at 607.297 kb on + strand, within RPSI07_RS24030 at 607.297 kb on + strand, within RPSI07_RS24030 at 607.297 kb on + strand, within RPSI07_RS24030 at 607.297 kb on + strand, within RPSI07_RS24030 at 607.297 kb on + strand, within RPSI07_RS24030 at 607.297 kb on + strand, within RPSI07_RS24030 at 607.298 kb on - strand, within RPSI07_RS24030 at 607.298 kb on - strand, within RPSI07_RS24030 at 607.298 kb on - strand, within RPSI07_RS24030 at 607.298 kb on - strand, within RPSI07_RS24030 at 607.298 kb on - strand, within RPSI07_RS24030 at 607.298 kb on - strand, within RPSI07_RS24030 at 607.301 kb on + strand, within RPSI07_RS24030 at 607.301 kb on + strand, within RPSI07_RS24030 at 607.302 kb on - strand, within RPSI07_RS24030 at 607.302 kb on - strand, within RPSI07_RS24030 at 607.368 kb on + strand at 607.368 kb on + strand at 607.368 kb on + strand at 607.368 kb on + strand at 607.368 kb on + strand at 607.369 kb on - strand at 607.369 kb on - strand at 607.471 kb on + strand at 607.807 kb on + strand at 607.807 kb on + strand at 607.807 kb on + strand at 607.837 kb on - strand at 608.205 kb on + strand at 608.205 kb on + strand at 608.205 kb on + strand at 608.205 kb on + strand at 608.206 kb on - strand at 608.206 kb on - strand at 608.206 kb on - strand at 608.237 kb on + strand at 608.238 kb on - strand at 608.486 kb on - strand at 608.662 kb on - strand at 608.717 kb on + strand at 608.717 kb on + strand at 608.717 kb on + strand at 608.745 kb on + strand at 608.745 kb on + strand at 608.745 kb on + strand at 608.746 kb on - strand at 608.746 kb on - strand at 608.746 kb on - strand at 608.746 kb on - strand at 608.746 kb on - strand at 608.981 kb on + strand, within RPSI07_RS02065 at 609.627 kb on - strand, within RPSI07_RS02065 at 610.613 kb on + strand, within RPSI07_RS02065 at 610.614 kb on - strand, within RPSI07_RS02065 at 610.745 kb on + strand, within RPSI07_RS02065 at 610.745 kb on + strand, within RPSI07_RS02065 at 610.746 kb on - strand, within RPSI07_RS02065 at 610.746 kb on - strand, within RPSI07_RS02065 at 611.263 kb on + strand, within RPSI07_RS02065 at 611.263 kb on + strand, within RPSI07_RS02065 at 611.264 kb on - strand, within RPSI07_RS02065 at 611.264 kb on - strand, within RPSI07_RS02065 at 611.264 kb on - strand, within RPSI07_RS02065 at 611.264 kb on - strand, within RPSI07_RS02065 at 611.264 kb on - strand, within RPSI07_RS02065 at 611.267 kb on + strand, within RPSI07_RS02065 at 611.267 kb on + strand, within RPSI07_RS02065 at 611.267 kb on + strand, within RPSI07_RS02065 at 611.268 kb on - strand, within RPSI07_RS02065 at 611.268 kb on - strand, within RPSI07_RS02065 at 611.268 kb on - strand, within RPSI07_RS02065 at 611.380 kb on + strand, within RPSI07_RS02065 at 611.380 kb on + strand, within RPSI07_RS02065 at 611.380 kb on + strand, within RPSI07_RS02065 at 611.380 kb on + strand, within RPSI07_RS02065 at 611.381 kb on - strand, within RPSI07_RS02065 at 611.847 kb on - strand, within RPSI07_RS02065 at 611.892 kb on + strand, within RPSI07_RS02065 at 611.892 kb on + strand, within RPSI07_RS02065 at 611.893 kb on - strand, within RPSI07_RS02065 at 611.893 kb on - strand, within RPSI07_RS02065 at 611.893 kb on - strand, within RPSI07_RS02065 at 611.893 kb on - strand, within RPSI07_RS02065 at 612.151 kb on - strand, within RPSI07_RS02065 at 612.179 kb on + strand, within RPSI07_RS02065 at 612.179 kb on + strand, within RPSI07_RS02065 at 612.179 kb on + strand, within RPSI07_RS02065 at 612.180 kb on - strand, within RPSI07_RS02065 at 612.180 kb on - strand, within RPSI07_RS02065 at 612.180 kb on - strand, within RPSI07_RS02065 at 612.288 kb on + strand, within RPSI07_RS02065 at 612.289 kb on - strand, within RPSI07_RS02065 at 612.600 kb on + strand, within RPSI07_RS02065 at 612.600 kb on + strand, within RPSI07_RS02065 at 612.600 kb on + strand, within RPSI07_RS02065 at 612.600 kb on + strand, within RPSI07_RS02065 at 612.600 kb on + strand, within RPSI07_RS02065 at 612.601 kb on - strand, within RPSI07_RS02065 at 612.601 kb on - strand at 612.601 kb on - strand, within RPSI07_RS02065 at 612.601 kb on - strand, within RPSI07_RS02065 at 612.601 kb on - strand, within RPSI07_RS02065 at 612.631 kb on - strand, within RPSI07_RS02065 at 612.631 kb on - strand, within RPSI07_RS02065 at 612.663 kb on + strand, within RPSI07_RS02065 at 612.663 kb on + strand, within RPSI07_RS02065 at 612.664 kb on - strand, within RPSI07_RS02065 at 612.729 kb on + strand, within RPSI07_RS02065 at 612.729 kb on + strand, within RPSI07_RS02065 at 612.777 kb on + strand, within RPSI07_RS02065 at 612.795 kb on + strand, within RPSI07_RS02065 at 612.795 kb on + strand, within RPSI07_RS02065 at 612.796 kb on - strand, within RPSI07_RS02065 at 612.796 kb on - strand, within RPSI07_RS02065 at 612.798 kb on - strand, within RPSI07_RS02065 at 612.798 kb on - strand, within RPSI07_RS02065 at 612.798 kb on - strand, within RPSI07_RS02065 at 612.798 kb on - strand, within RPSI07_RS02065 at 612.876 kb on + strand, within RPSI07_RS02065 at 612.876 kb on + strand, within RPSI07_RS02065 at 612.900 kb on + strand, within RPSI07_RS02065 at 612.901 kb on - strand, within RPSI07_RS02065 at 612.901 kb on - strand, within RPSI07_RS02065 at 612.954 kb on + strand, within RPSI07_RS02065 at 612.955 kb on - strand, within RPSI07_RS02065 at 613.029 kb on + strand, within RPSI07_RS02065 at 613.251 kb on + strand, within RPSI07_RS02065 at 613.251 kb on + strand, within RPSI07_RS02065 at 613.251 kb on + strand, within RPSI07_RS02065 at 613.251 kb on + strand, within RPSI07_RS02065 at 613.252 kb on - strand, within RPSI07_RS02065 at 613.257 kb on + strand, within RPSI07_RS02065 at 613.257 kb on + strand, within RPSI07_RS02065 at 613.257 kb on + strand, within RPSI07_RS02065 at 613.258 kb on - strand, within RPSI07_RS02065 at 613.258 kb on - strand, within RPSI07_RS02065 at 613.258 kb on - strand, within RPSI07_RS02065 at 613.258 kb on - strand, within RPSI07_RS02065 at 613.281 kb on + strand, within RPSI07_RS02065 at 613.281 kb on + strand, within RPSI07_RS02065 at 613.636 kb on - strand, within RPSI07_RS02065 at 613.636 kb on - strand, within RPSI07_RS02065 at 613.716 kb on - strand, within RPSI07_RS02065 at 613.785 kb on + strand, within RPSI07_RS02065 at 613.785 kb on + strand, within RPSI07_RS02065 at 613.785 kb on + strand, within RPSI07_RS02065 at 613.786 kb on - strand, within RPSI07_RS02065 at 613.849 kb on - strand, within RPSI07_RS02065 at 613.849 kb on - strand, within RPSI07_RS02065 at 613.849 kb on - strand, within RPSI07_RS02065 at 613.869 kb on + strand, within RPSI07_RS02065 at 613.869 kb on + strand, within RPSI07_RS02065 at 613.869 kb on + strand, within RPSI07_RS02065 at 613.870 kb on - strand, within RPSI07_RS02065 at 614.043 kb on + strand, within RPSI07_RS02065 at 614.044 kb on - strand, within RPSI07_RS02065 at 614.044 kb on - strand, within RPSI07_RS02065 at 614.556 kb on + strand, within RPSI07_RS02065 at 614.557 kb on - strand, within RPSI07_RS02065 at 614.637 kb on + strand, within RPSI07_RS02065 at 614.637 kb on + strand, within RPSI07_RS02065 at 614.638 kb on - strand, within RPSI07_RS02065 at 614.870 kb on + strand, within RPSI07_RS02065 at 615.057 kb on + strand, within RPSI07_RS02065 at 615.057 kb on + strand, within RPSI07_RS02065 at 615.057 kb on + strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 615.058 kb on - strand, within RPSI07_RS02065 at 616.669 kb on - strand at 616.970 kb on + strand at 616.970 kb on + strand at 617.015 kb on - strand at 617.041 kb on + strand at 617.042 kb on - strand at 617.115 kb on + strand at 617.115 kb on + strand at 617.116 kb on - strand at 617.116 kb on - strand at 617.116 kb on - strand at 617.128 kb on + strand at 617.129 kb on + strand at 617.129 kb on + strand at 617.129 kb on + strand at 617.130 kb on - strand at 617.130 kb on - strand at 617.181 kb on + strand at 617.182 kb on - strand at 617.229 kb on + strand at 617.229 kb on + strand at 617.229 kb on + strand at 617.233 kb on + strand at 617.234 kb on - strand at 617.234 kb on - strand at 617.234 kb on - strand at 617.297 kb on + strand at 617.297 kb on + strand at 617.298 kb on - strand at 617.309 kb on - strand at 617.331 kb on - strand at 617.523 kb on - strand at 617.566 kb on + strand at 617.566 kb on + strand at 617.580 kb on - strand at 617.646 kb on + strand at 617.648 kb on + strand at 617.648 kb on + strand at 617.648 kb on + strand at 617.649 kb on - strand at 617.649 kb on - strand at 617.677 kb on + strand at 617.708 kb on + strand at 617.709 kb on + strand at 617.709 kb on + strand at 617.710 kb on - strand at 617.710 kb on - strand at 617.710 kb on - strand at 617.710 kb on - strand at 617.710 kb on - strand at 617.710 kb on - strand at 617.710 kb on - strand at 617.754 kb on - strand at 617.764 kb on - strand at 617.793 kb on - strand at 617.821 kb on + strand at 617.823 kb on - strand at 617.863 kb on - strand at 617.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix remove 607,010 - RPSI07_RS24030 0.40 -2.1 607,109 + RPSI07_RS24030 0.54 +0.7 607,109 + RPSI07_RS24030 0.54 +1.0 607,135 + RPSI07_RS24030 0.58 +0.1 607,135 + RPSI07_RS24030 0.58 +0.2 607,136 - RPSI07_RS24030 0.58 +3.3 607,136 - RPSI07_RS24030 0.58 -0.2 607,136 - RPSI07_RS24030 0.58 -0.7 607,145 + RPSI07_RS24030 0.59 -0.6 607,145 + RPSI07_RS24030 0.59 +0.3 607,145 + RPSI07_RS24030 0.59 -1.8 607,145 + RPSI07_RS24030 0.59 -0.2 607,146 - RPSI07_RS24030 0.59 +2.0 607,230 + RPSI07_RS24030 0.71 +0.8 607,231 - RPSI07_RS24030 0.71 +0.3 607,297 + RPSI07_RS24030 0.81 -0.3 607,297 + RPSI07_RS24030 0.81 -1.1 607,297 + RPSI07_RS24030 0.81 +2.3 607,297 + RPSI07_RS24030 0.81 +0.0 607,297 + RPSI07_RS24030 0.81 +1.4 607,297 + RPSI07_RS24030 0.81 -0.6 607,298 - RPSI07_RS24030 0.81 -1.4 607,298 - RPSI07_RS24030 0.81 -0.3 607,298 - RPSI07_RS24030 0.81 -0.5 607,298 - RPSI07_RS24030 0.81 -0.0 607,298 - RPSI07_RS24030 0.81 +0.3 607,298 - RPSI07_RS24030 0.81 +1.0 607,301 + RPSI07_RS24030 0.81 +0.2 607,301 + RPSI07_RS24030 0.81 -0.4 607,302 - RPSI07_RS24030 0.82 +0.6 607,302 - RPSI07_RS24030 0.82 -0.7 607,368 + -0.3 607,368 + +0.3 607,368 + +2.0 607,368 + +0.4 607,368 + -0.3 607,369 - +0.3 607,369 - +1.0 607,471 + -0.7 607,807 + +0.2 607,807 + -0.2 607,807 + +0.6 607,837 - -0.7 608,205 + -0.6 608,205 + -0.2 608,205 + -0.0 608,205 + +0.0 608,206 - +0.5 608,206 - -0.1 608,206 - -0.1 608,237 + -0.4 608,238 - -0.3 608,486 - -1.6 608,662 - +0.9 608,717 + +0.5 608,717 + -1.9 608,717 + +1.8 608,745 + +0.3 608,745 + -0.3 608,745 + -0.5 608,746 - +1.8 608,746 - -2.1 608,746 - -0.7 608,746 - -0.1 608,746 - -0.3 608,981 + RPSI07_RS02065 0.12 -0.2 609,627 - RPSI07_RS02065 0.19 +0.7 610,613 + RPSI07_RS02065 0.30 -0.7 610,614 - RPSI07_RS02065 0.30 -0.2 610,745 + RPSI07_RS02065 0.31 -0.1 610,745 + RPSI07_RS02065 0.31 -0.6 610,746 - RPSI07_RS02065 0.31 -0.4 610,746 - RPSI07_RS02065 0.31 +1.2 611,263 + RPSI07_RS02065 0.37 +0.2 611,263 + RPSI07_RS02065 0.37 +0.4 611,264 - RPSI07_RS02065 0.37 +1.0 611,264 - RPSI07_RS02065 0.37 -0.9 611,264 - RPSI07_RS02065 0.37 -1.3 611,264 - RPSI07_RS02065 0.37 -1.1 611,264 - RPSI07_RS02065 0.37 -0.1 611,267 + RPSI07_RS02065 0.37 -0.4 611,267 + RPSI07_RS02065 0.37 -1.3 611,267 + RPSI07_RS02065 0.37 +0.5 611,268 - RPSI07_RS02065 0.37 -0.4 611,268 - RPSI07_RS02065 0.37 -0.5 611,268 - RPSI07_RS02065 0.37 +0.6 611,380 + RPSI07_RS02065 0.38 +0.9 611,380 + RPSI07_RS02065 0.38 +0.1 611,380 + RPSI07_RS02065 0.38 -1.1 611,380 + RPSI07_RS02065 0.38 -0.6 611,381 - RPSI07_RS02065 0.38 -2.1 611,847 - RPSI07_RS02065 0.43 +1.3 611,892 + RPSI07_RS02065 0.44 +3.8 611,892 + RPSI07_RS02065 0.44 -0.8 611,893 - RPSI07_RS02065 0.44 -0.6 611,893 - RPSI07_RS02065 0.44 +0.2 611,893 - RPSI07_RS02065 0.44 -0.3 611,893 - RPSI07_RS02065 0.44 +0.3 612,151 - RPSI07_RS02065 0.47 +1.2 612,179 + RPSI07_RS02065 0.47 +1.1 612,179 + RPSI07_RS02065 0.47 -0.1 612,179 + RPSI07_RS02065 0.47 -0.5 612,180 - RPSI07_RS02065 0.47 -0.2 612,180 - RPSI07_RS02065 0.47 -0.9 612,180 - RPSI07_RS02065 0.47 +1.0 612,288 + RPSI07_RS02065 0.48 -0.2 612,289 - RPSI07_RS02065 0.48 -3.2 612,600 + RPSI07_RS02065 0.52 +1.4 612,600 + RPSI07_RS02065 0.52 -0.4 612,600 + RPSI07_RS02065 0.52 -2.7 612,600 + RPSI07_RS02065 0.52 +0.6 612,600 + RPSI07_RS02065 0.52 +0.3 612,601 - RPSI07_RS02065 0.52 -1.0 612,601 - +2.6 612,601 - RPSI07_RS02065 0.52 +0.3 612,601 - RPSI07_RS02065 0.52 -0.0 612,601 - RPSI07_RS02065 0.52 -0.3 612,631 - RPSI07_RS02065 0.52 +0.5 612,631 - RPSI07_RS02065 0.52 +1.0 612,663 + RPSI07_RS02065 0.52 +1.2 612,663 + RPSI07_RS02065 0.52 -0.2 612,664 - RPSI07_RS02065 0.52 -2.9 612,729 + RPSI07_RS02065 0.53 +0.7 612,729 + RPSI07_RS02065 0.53 +0.2 612,777 + RPSI07_RS02065 0.54 -1.5 612,795 + RPSI07_RS02065 0.54 +0.5 612,795 + RPSI07_RS02065 0.54 -2.0 612,796 - RPSI07_RS02065 0.54 +0.4 612,796 - RPSI07_RS02065 0.54 +0.0 612,798 - RPSI07_RS02065 0.54 -0.9 612,798 - RPSI07_RS02065 0.54 +1.4 612,798 - RPSI07_RS02065 0.54 -0.1 612,798 - RPSI07_RS02065 0.54 +0.3 612,876 + RPSI07_RS02065 0.55 -1.2 612,876 + RPSI07_RS02065 0.55 -0.3 612,900 + RPSI07_RS02065 0.55 +0.9 612,901 - RPSI07_RS02065 0.55 +0.4 612,901 - RPSI07_RS02065 0.55 -1.1 612,954 + RPSI07_RS02065 0.56 -1.7 612,955 - RPSI07_RS02065 0.56 -2.3 613,029 + RPSI07_RS02065 0.56 -1.5 613,251 + RPSI07_RS02065 0.59 -0.9 613,251 + RPSI07_RS02065 0.59 +0.6 613,251 + RPSI07_RS02065 0.59 -2.0 613,251 + RPSI07_RS02065 0.59 +2.6 613,252 - RPSI07_RS02065 0.59 +1.3 613,257 + RPSI07_RS02065 0.59 -0.7 613,257 + RPSI07_RS02065 0.59 -2.0 613,257 + RPSI07_RS02065 0.59 -0.4 613,258 - RPSI07_RS02065 0.59 -0.7 613,258 - RPSI07_RS02065 0.59 +1.0 613,258 - RPSI07_RS02065 0.59 +0.3 613,258 - RPSI07_RS02065 0.59 +0.7 613,281 + RPSI07_RS02065 0.59 -0.8 613,281 + RPSI07_RS02065 0.59 -1.0 613,636 - RPSI07_RS02065 0.63 -1.4 613,636 - RPSI07_RS02065 0.63 +0.2 613,716 - RPSI07_RS02065 0.64 -0.9 613,785 + RPSI07_RS02065 0.65 +1.5 613,785 + RPSI07_RS02065 0.65 -0.4 613,785 + RPSI07_RS02065 0.65 +2.8 613,786 - RPSI07_RS02065 0.65 -0.6 613,849 - RPSI07_RS02065 0.65 +0.8 613,849 - RPSI07_RS02065 0.65 +0.3 613,849 - RPSI07_RS02065 0.65 -0.7 613,869 + RPSI07_RS02065 0.66 +0.4 613,869 + RPSI07_RS02065 0.66 -1.9 613,869 + RPSI07_RS02065 0.66 +0.2 613,870 - RPSI07_RS02065 0.66 +0.0 614,043 + RPSI07_RS02065 0.67 +0.6 614,044 - RPSI07_RS02065 0.68 -1.0 614,044 - RPSI07_RS02065 0.68 -0.5 614,556 + RPSI07_RS02065 0.73 +0.0 614,557 - RPSI07_RS02065 0.73 +2.1 614,637 + RPSI07_RS02065 0.74 +0.9 614,637 + RPSI07_RS02065 0.74 +0.3 614,638 - RPSI07_RS02065 0.74 +0.3 614,870 + RPSI07_RS02065 0.77 -0.6 615,057 + RPSI07_RS02065 0.79 -0.8 615,057 + RPSI07_RS02065 0.79 -1.3 615,057 + RPSI07_RS02065 0.79 +0.0 615,058 - RPSI07_RS02065 0.79 +0.0 615,058 - RPSI07_RS02065 0.79 +2.2 615,058 - RPSI07_RS02065 0.79 -1.8 615,058 - RPSI07_RS02065 0.79 +1.0 615,058 - RPSI07_RS02065 0.79 -0.6 615,058 - RPSI07_RS02065 0.79 +1.1 615,058 - RPSI07_RS02065 0.79 +0.7 616,669 - -1.9 616,970 + +0.4 616,970 + -0.7 617,015 - -1.1 617,041 + -0.4 617,042 - +0.7 617,115 + -0.6 617,115 + -0.6 617,116 - +0.9 617,116 - +0.0 617,116 - +0.2 617,128 + +0.0 617,129 + -0.1 617,129 + -0.6 617,129 + -0.1 617,130 - -0.6 617,130 - -3.0 617,181 + +1.1 617,182 - -0.1 617,229 + +0.7 617,229 + -2.0 617,229 + +0.0 617,233 + -0.5 617,234 - +1.2 617,234 - -0.4 617,234 - +0.9 617,297 + -0.3 617,297 + -0.6 617,298 - +0.4 617,309 - -0.2 617,331 - -0.4 617,523 - -0.6 617,566 + +0.1 617,566 + -0.5 617,580 - +0.2 617,646 + +0.4 617,648 + -1.3 617,648 + -1.3 617,648 + +0.1 617,649 - +0.0 617,649 - -0.8 617,677 + +0.8 617,708 + -1.0 617,709 + -0.2 617,709 + +0.4 617,710 - +0.2 617,710 - -1.0 617,710 - +0.8 617,710 - -1.6 617,710 - -0.8 617,710 - -1.8 617,710 - -0.3 617,754 - -0.3 617,764 - -0.1 617,793 - +0.5 617,821 + +0.8 617,823 - -0.2 617,863 - -0.3 617,866 + -2.2
Or see this region's nucleotide sequence