Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03260

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03250 and RPSI07_RS03255 are separated by 31 nucleotidesRPSI07_RS03255 and RPSI07_RS03260 are separated by 10 nucleotidesRPSI07_RS03260 and RPSI07_RS03265 overlap by 4 nucleotidesRPSI07_RS03265 and RPSI07_RS03270 are separated by 74 nucleotides RPSI07_RS03250: RPSI07_RS03250 - ABC transporter permease, at 887,665 to 888,582 _RS03250 RPSI07_RS03255: RPSI07_RS03255 - ABC transporter permease, at 888,614 to 889,543 _RS03255 RPSI07_RS03260: RPSI07_RS03260 - ABC transporter ATP-binding protein, at 889,554 to 890,543 _RS03260 RPSI07_RS03265: RPSI07_RS03265 - ABC transporter ATP-binding protein, at 890,540 to 891,397 _RS03265 RPSI07_RS03270: RPSI07_RS03270 - M20 peptidase family dipeptidase, at 891,472 to 892,884 _RS03270 Position (kb) 889 890 891Strain fitness (log2 ratio) -2 -1 0 1 2 3at 888.728 kb on + strand, within RPSI07_RS03255at 888.728 kb on + strand, within RPSI07_RS03255at 888.812 kb on + strand, within RPSI07_RS03255at 888.813 kb on - strand, within RPSI07_RS03255at 888.908 kb on + strand, within RPSI07_RS03255at 888.908 kb on + strand, within RPSI07_RS03255at 889.013 kb on + strand, within RPSI07_RS03255at 889.046 kb on + strand, within RPSI07_RS03255at 889.046 kb on + strand, within RPSI07_RS03255at 889.046 kb on + strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.279 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.872 kb on + strand, within RPSI07_RS03260at 889.872 kb on + strand, within RPSI07_RS03260at 889.872 kb on + strand, within RPSI07_RS03260at 889.873 kb on - strand, within RPSI07_RS03260at 889.953 kb on + strand, within RPSI07_RS03260at 889.954 kb on - strand, within RPSI07_RS03260at 890.238 kb on + strand, within RPSI07_RS03260at 890.238 kb on + strand, within RPSI07_RS03260at 890.301 kb on + strand, within RPSI07_RS03260at 890.301 kb on + strand, within RPSI07_RS03260at 890.576 kb on + strandat 890.576 kb on + strandat 890.576 kb on + strandat 890.576 kb on + strandat 890.576 kb on + strandat 890.576 kb on + strandat 890.576 kb on + strandat 890.577 kb on - strandat 890.802 kb on + strand, within RPSI07_RS03265at 890.802 kb on + strand, within RPSI07_RS03265at 890.803 kb on - strand, within RPSI07_RS03265at 890.803 kb on - strand, within RPSI07_RS03265at 890.860 kb on + strand, within RPSI07_RS03265at 890.861 kb on + strand, within RPSI07_RS03265at 890.861 kb on + strand, within RPSI07_RS03265at 890.861 kb on + strand, within RPSI07_RS03265at 891.178 kb on + strand, within RPSI07_RS03265at 891.180 kb on - strand, within RPSI07_RS03265at 891.180 kb on - strand, within RPSI07_RS03265at 891.180 kb on - strand, within RPSI07_RS03265at 891.180 kb on - strand, within RPSI07_RS03265at 891.180 kb on - strand, within RPSI07_RS03265at 891.180 kb on - strand, within RPSI07_RS03265at 891.305 kb on + strand, within RPSI07_RS03265at 891.305 kb on + strand, within RPSI07_RS03265at 891.305 kb on + strand, within RPSI07_RS03265at 891.305 kb on + strand, within RPSI07_RS03265at 891.306 kb on - strand, within RPSI07_RS03265at 891.306 kb on - strand, within RPSI07_RS03265at 891.508 kb on + strandat 891.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
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888,728 + RPSI07_RS03255 0.12 -0.3
888,728 + RPSI07_RS03255 0.12 -0.7
888,812 + RPSI07_RS03255 0.21 +2.9
888,813 - RPSI07_RS03255 0.21 -0.9
888,908 + RPSI07_RS03255 0.32 +0.3
888,908 + RPSI07_RS03255 0.32 +0.1
889,013 + RPSI07_RS03255 0.43 -0.2
889,046 + RPSI07_RS03255 0.46 -0.7
889,046 + RPSI07_RS03255 0.46 -2.2
889,046 + RPSI07_RS03255 0.46 -0.1
889,047 - RPSI07_RS03255 0.47 -0.9
889,047 - RPSI07_RS03255 0.47 -0.4
889,047 - RPSI07_RS03255 0.47 -0.7
889,047 - RPSI07_RS03255 0.47 -0.1
889,047 - RPSI07_RS03255 0.47 -1.4
889,047 - RPSI07_RS03255 0.47 +0.1
889,047 - RPSI07_RS03255 0.47 +0.5
889,253 + RPSI07_RS03255 0.69 +0.6
889,253 + RPSI07_RS03255 0.69 +0.9
889,253 + RPSI07_RS03255 0.69 -0.3
889,253 + RPSI07_RS03255 0.69 -0.6
889,254 - RPSI07_RS03255 0.69 -1.2
889,254 - RPSI07_RS03255 0.69 -0.7
889,254 - RPSI07_RS03255 0.69 -0.1
889,254 - RPSI07_RS03255 0.69 +0.6
889,254 - RPSI07_RS03255 0.69 +0.5
889,279 + RPSI07_RS03255 0.72 +0.2
889,421 + RPSI07_RS03255 0.87 +0.9
889,421 + RPSI07_RS03255 0.87 -0.8
889,421 + RPSI07_RS03255 0.87 +0.9
889,421 + RPSI07_RS03255 0.87 -0.1
889,421 + RPSI07_RS03255 0.87 -0.4
889,421 + RPSI07_RS03255 0.87 +0.3
889,421 + RPSI07_RS03255 0.87 +0.5
889,422 - RPSI07_RS03255 0.87 +1.2
889,422 - RPSI07_RS03255 0.87 -1.8
889,422 - RPSI07_RS03255 0.87 +0.9
889,422 - RPSI07_RS03255 0.87 -0.8
889,422 - RPSI07_RS03255 0.87 +0.1
889,872 + RPSI07_RS03260 0.32 -0.9
889,872 + RPSI07_RS03260 0.32 +0.5
889,872 + RPSI07_RS03260 0.32 +0.2
889,873 - RPSI07_RS03260 0.32 -0.8
889,953 + RPSI07_RS03260 0.40 -0.1
889,954 - RPSI07_RS03260 0.40 +0.2
890,238 + RPSI07_RS03260 0.69 -0.0
890,238 + RPSI07_RS03260 0.69 -0.1
890,301 + RPSI07_RS03260 0.75 +0.6
890,301 + RPSI07_RS03260 0.75 +1.3
890,576 + -0.1
890,576 + +0.3
890,576 + -1.1
890,576 + -1.1
890,576 + +0.9
890,576 + +0.3
890,576 + +0.9
890,577 - +0.9
890,802 + RPSI07_RS03265 0.31 -0.9
890,802 + RPSI07_RS03265 0.31 -0.6
890,803 - RPSI07_RS03265 0.31 -1.7
890,803 - RPSI07_RS03265 0.31 -0.9
890,860 + RPSI07_RS03265 0.37 +0.4
890,861 + RPSI07_RS03265 0.37 +0.3
890,861 + RPSI07_RS03265 0.37 +0.1
890,861 + RPSI07_RS03265 0.37 -0.1
891,178 + RPSI07_RS03265 0.74 +0.0
891,180 - RPSI07_RS03265 0.75 +2.7
891,180 - RPSI07_RS03265 0.75 +0.5
891,180 - RPSI07_RS03265 0.75 -0.9
891,180 - RPSI07_RS03265 0.75 +1.3
891,180 - RPSI07_RS03265 0.75 -0.3
891,180 - RPSI07_RS03265 0.75 +0.6
891,305 + RPSI07_RS03265 0.89 -0.3
891,305 + RPSI07_RS03265 0.89 -0.4
891,305 + RPSI07_RS03265 0.89 +0.2
891,305 + RPSI07_RS03265 0.89 +0.2
891,306 - RPSI07_RS03265 0.89 -0.7
891,306 - RPSI07_RS03265 0.89 -0.5
891,508 + +0.2
891,509 - -0.3

Or see this region's nucleotide sequence