Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS00245

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS00240 and RPSI07_RS00245 overlap by 4 nucleotidesRPSI07_RS00245 and RPSI07_RS00250 are separated by 37 nucleotidesRPSI07_RS00250 and RPSI07_RS00255 are separated by 314 nucleotides RPSI07_RS00240: RPSI07_RS00240 - 2-aminobenzoate-CoA ligase, at 56,264 to 57,883 _RS00240 RPSI07_RS00245: RPSI07_RS00245 - acyl-CoA thioesterase, at 57,880 to 58,290 _RS00245 RPSI07_RS00250: RPSI07_RS00250 - RidA family protein, at 58,328 to 58,720 _RS00250 RPSI07_RS00255: RPSI07_RS00255 - hypothetical protein, at 59,035 to 59,316 _RS00255 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1 2at 56.974 kb on + strand, within RPSI07_RS00240at 56.974 kb on + strand, within RPSI07_RS00240at 56.974 kb on + strand, within RPSI07_RS00240at 57.146 kb on + strand, within RPSI07_RS00240at 57.146 kb on + strand, within RPSI07_RS00240at 57.147 kb on - strand, within RPSI07_RS00240at 57.304 kb on + strand, within RPSI07_RS00240at 57.304 kb on + strand, within RPSI07_RS00240at 57.304 kb on + strand, within RPSI07_RS00240at 57.304 kb on + strand, within RPSI07_RS00240at 57.304 kb on + strand, within RPSI07_RS00240at 57.304 kb on + strand, within RPSI07_RS00240at 57.305 kb on - strand, within RPSI07_RS00240at 57.305 kb on - strand, within RPSI07_RS00240at 57.305 kb on - strand, within RPSI07_RS00240at 57.305 kb on - strand, within RPSI07_RS00240at 57.368 kb on + strand, within RPSI07_RS00240at 57.458 kb on + strand, within RPSI07_RS00240at 57.485 kb on + strand, within RPSI07_RS00240at 57.485 kb on + strand, within RPSI07_RS00240at 57.486 kb on - strand, within RPSI07_RS00240at 57.486 kb on - strand, within RPSI07_RS00240at 57.486 kb on - strand, within RPSI07_RS00240at 57.521 kb on + strand, within RPSI07_RS00240at 57.521 kb on + strand, within RPSI07_RS00240at 57.521 kb on + strand, within RPSI07_RS00240at 57.522 kb on - strand, within RPSI07_RS00240at 57.551 kb on + strand, within RPSI07_RS00240at 57.590 kb on + strand, within RPSI07_RS00240at 57.591 kb on - strand, within RPSI07_RS00240at 57.591 kb on - strand, within RPSI07_RS00240at 57.591 kb on - strand, within RPSI07_RS00240at 57.785 kb on + strandat 57.785 kb on + strandat 57.786 kb on - strandat 57.791 kb on + strandat 57.791 kb on + strandat 57.791 kb on + strandat 57.946 kb on + strand, within RPSI07_RS00245at 57.947 kb on - strand, within RPSI07_RS00245at 57.947 kb on - strand, within RPSI07_RS00245at 57.947 kb on - strand, within RPSI07_RS00245at 57.958 kb on + strand, within RPSI07_RS00245at 57.959 kb on - strand, within RPSI07_RS00245at 57.959 kb on - strand, within RPSI07_RS00245at 58.018 kb on + strand, within RPSI07_RS00245at 58.018 kb on + strand, within RPSI07_RS00245at 58.019 kb on - strand, within RPSI07_RS00245at 58.019 kb on - strand, within RPSI07_RS00245at 58.230 kb on + strand, within RPSI07_RS00245at 58.230 kb on + strand, within RPSI07_RS00245at 58.327 kb on + strandat 58.744 kb on - strandat 58.758 kb on - strandat 58.872 kb on - strandat 58.887 kb on - strandat 58.952 kb on + strandat 59.011 kb on + strandat 59.011 kb on + strandat 59.012 kb on - strandat 59.109 kb on + strand, within RPSI07_RS00255at 59.109 kb on + strand, within RPSI07_RS00255at 59.109 kb on + strand, within RPSI07_RS00255at 59.110 kb on - strand, within RPSI07_RS00255at 59.110 kb on - strand, within RPSI07_RS00255at 59.110 kb on - strand, within RPSI07_RS00255at 59.110 kb on - strand, within RPSI07_RS00255at 59.110 kb on - strand, within RPSI07_RS00255at 59.261 kb on + strand, within RPSI07_RS00255at 59.261 kb on + strand, within RPSI07_RS00255at 59.261 kb on + strand, within RPSI07_RS00255at 59.262 kb on - strand, within RPSI07_RS00255at 59.262 kb on - strand, within RPSI07_RS00255at 59.262 kb on - strand, within RPSI07_RS00255at 59.262 kb on - strand, within RPSI07_RS00255at 59.265 kb on + strand, within RPSI07_RS00255

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
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56,974 + RPSI07_RS00240 0.44 +0.4
56,974 + RPSI07_RS00240 0.44 -0.2
56,974 + RPSI07_RS00240 0.44 -1.1
57,146 + RPSI07_RS00240 0.54 -1.8
57,146 + RPSI07_RS00240 0.54 -0.1
57,147 - RPSI07_RS00240 0.55 +0.8
57,304 + RPSI07_RS00240 0.64 -0.1
57,304 + RPSI07_RS00240 0.64 -0.5
57,304 + RPSI07_RS00240 0.64 -0.2
57,304 + RPSI07_RS00240 0.64 +0.2
57,304 + RPSI07_RS00240 0.64 -0.5
57,304 + RPSI07_RS00240 0.64 +0.5
57,305 - RPSI07_RS00240 0.64 -0.6
57,305 - RPSI07_RS00240 0.64 +0.3
57,305 - RPSI07_RS00240 0.64 +0.2
57,305 - RPSI07_RS00240 0.64 +0.3
57,368 + RPSI07_RS00240 0.68 -0.5
57,458 + RPSI07_RS00240 0.74 -0.3
57,485 + RPSI07_RS00240 0.75 +0.8
57,485 + RPSI07_RS00240 0.75 -0.8
57,486 - RPSI07_RS00240 0.75 +0.4
57,486 - RPSI07_RS00240 0.75 -0.2
57,486 - RPSI07_RS00240 0.75 -0.8
57,521 + RPSI07_RS00240 0.78 +0.2
57,521 + RPSI07_RS00240 0.78 -0.5
57,521 + RPSI07_RS00240 0.78 -2.4
57,522 - RPSI07_RS00240 0.78 +0.5
57,551 + RPSI07_RS00240 0.79 -0.5
57,590 + RPSI07_RS00240 0.82 -1.7
57,591 - RPSI07_RS00240 0.82 +0.6
57,591 - RPSI07_RS00240 0.82 +0.0
57,591 - RPSI07_RS00240 0.82 +1.8
57,785 + -2.2
57,785 + -0.4
57,786 - -0.8
57,791 + -1.0
57,791 + -0.8
57,791 + -0.8
57,946 + RPSI07_RS00245 0.16 +0.2
57,947 - RPSI07_RS00245 0.16 -0.5
57,947 - RPSI07_RS00245 0.16 -0.2
57,947 - RPSI07_RS00245 0.16 +0.9
57,958 + RPSI07_RS00245 0.19 -0.4
57,959 - RPSI07_RS00245 0.19 -1.2
57,959 - RPSI07_RS00245 0.19 +0.2
58,018 + RPSI07_RS00245 0.34 -0.2
58,018 + RPSI07_RS00245 0.34 +0.4
58,019 - RPSI07_RS00245 0.34 -0.4
58,019 - RPSI07_RS00245 0.34 +0.0
58,230 + RPSI07_RS00245 0.85 -0.8
58,230 + RPSI07_RS00245 0.85 -1.2
58,327 + -1.0
58,744 - -1.3
58,758 - +0.8
58,872 - -1.8
58,887 - +0.8
58,952 + -0.4
59,011 + +0.8
59,011 + +0.8
59,012 - +0.8
59,109 + RPSI07_RS00255 0.26 +0.4
59,109 + RPSI07_RS00255 0.26 +0.6
59,109 + RPSI07_RS00255 0.26 +0.4
59,110 - RPSI07_RS00255 0.27 +0.2
59,110 - RPSI07_RS00255 0.27 -0.6
59,110 - RPSI07_RS00255 0.27 -0.0
59,110 - RPSI07_RS00255 0.27 -0.8
59,110 - RPSI07_RS00255 0.27 +0.8
59,261 + RPSI07_RS00255 0.80 +0.8
59,261 + RPSI07_RS00255 0.80 +0.2
59,261 + RPSI07_RS00255 0.80 -1.5
59,262 - RPSI07_RS00255 0.80 -0.0
59,262 - RPSI07_RS00255 0.80 +0.0
59,262 - RPSI07_RS00255 0.80 -0.8
59,262 - RPSI07_RS00255 0.80 +0.1
59,265 + RPSI07_RS00255 0.82 -0.4

Or see this region's nucleotide sequence