Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15240

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS15235 and RPSI07_RS15240 are separated by 164 nucleotidesRPSI07_RS15240 and RPSI07_RS15245 are separated by 334 nucleotides RPSI07_RS15235: RPSI07_RS15235 - lytic transglycosylase, at 1,578,837 to 1,580,369 _RS15235 RPSI07_RS15240: RPSI07_RS15240 - propionate--CoA ligase, at 1,580,534 to 1,582,432 _RS15240 RPSI07_RS15245: RPSI07_RS15245 - carbamoyl-phosphate synthase small subunit, at 1,582,767 to 1,583,903 _RS15245 Position (kb) 1580 1581 1582 1583Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1579.534 kb on - strand, within RPSI07_RS15235at 1579.534 kb on - strand, within RPSI07_RS15235at 1579.534 kb on - strand, within RPSI07_RS15235at 1579.534 kb on - strand, within RPSI07_RS15235at 1579.534 kb on - strand, within RPSI07_RS15235at 1579.534 kb on - strand, within RPSI07_RS15235at 1579.620 kb on + strand, within RPSI07_RS15235at 1579.620 kb on + strand, within RPSI07_RS15235at 1579.620 kb on + strand, within RPSI07_RS15235at 1579.621 kb on - strand, within RPSI07_RS15235at 1579.621 kb on - strand, within RPSI07_RS15235at 1579.621 kb on - strand, within RPSI07_RS15235at 1579.621 kb on - strand, within RPSI07_RS15235at 1579.771 kb on - strand, within RPSI07_RS15235at 1579.771 kb on - strand, within RPSI07_RS15235at 1579.794 kb on + strand, within RPSI07_RS15235at 1579.794 kb on + strand, within RPSI07_RS15235at 1579.794 kb on + strand, within RPSI07_RS15235at 1579.795 kb on - strand, within RPSI07_RS15235at 1579.795 kb on - strand, within RPSI07_RS15235at 1579.795 kb on - strandat 1579.796 kb on - strand, within RPSI07_RS15235at 1579.810 kb on - strand, within RPSI07_RS15235at 1579.810 kb on - strand, within RPSI07_RS15235at 1579.810 kb on - strand, within RPSI07_RS15235at 1580.121 kb on + strand, within RPSI07_RS15235at 1580.262 kb on + strandat 1580.435 kb on + strandat 1580.447 kb on - strandat 1580.447 kb on - strandat 1580.564 kb on + strandat 1580.565 kb on - strandat 1580.565 kb on - strandat 1580.636 kb on + strandat 1580.638 kb on + strandat 1580.639 kb on - strandat 1580.762 kb on + strand, within RPSI07_RS15240at 1580.762 kb on + strand, within RPSI07_RS15240at 1580.762 kb on + strand, within RPSI07_RS15240at 1580.762 kb on + strand, within RPSI07_RS15240at 1580.762 kb on + strand, within RPSI07_RS15240at 1580.762 kb on + strand, within RPSI07_RS15240at 1580.763 kb on + strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.763 kb on - strand, within RPSI07_RS15240at 1580.795 kb on + strand, within RPSI07_RS15240at 1580.795 kb on + strand, within RPSI07_RS15240at 1580.795 kb on + strand, within RPSI07_RS15240at 1580.795 kb on + strand, within RPSI07_RS15240at 1580.796 kb on - strand, within RPSI07_RS15240at 1580.885 kb on + strand, within RPSI07_RS15240at 1580.885 kb on + strand, within RPSI07_RS15240at 1580.886 kb on - strand, within RPSI07_RS15240at 1580.886 kb on - strand, within RPSI07_RS15240at 1580.886 kb on - strand, within RPSI07_RS15240at 1580.886 kb on - strand, within RPSI07_RS15240at 1580.886 kb on - strand, within RPSI07_RS15240at 1581.065 kb on + strand, within RPSI07_RS15240at 1581.065 kb on + strand, within RPSI07_RS15240at 1581.065 kb on + strand, within RPSI07_RS15240at 1581.065 kb on + strand, within RPSI07_RS15240at 1581.066 kb on - strand, within RPSI07_RS15240at 1581.248 kb on + strand, within RPSI07_RS15240at 1581.257 kb on + strand, within RPSI07_RS15240at 1581.258 kb on - strand, within RPSI07_RS15240at 1581.368 kb on - strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.413 kb on + strand, within RPSI07_RS15240at 1581.414 kb on - strand, within RPSI07_RS15240at 1581.414 kb on - strand, within RPSI07_RS15240at 1581.414 kb on - strand, within RPSI07_RS15240at 1581.414 kb on - strand, within RPSI07_RS15240at 1581.415 kb on + strand, within RPSI07_RS15240at 1581.415 kb on + strand, within RPSI07_RS15240at 1581.415 kb on + strand, within RPSI07_RS15240at 1581.415 kb on + strand, within RPSI07_RS15240at 1581.416 kb on - strand, within RPSI07_RS15240at 1581.416 kb on - strand, within RPSI07_RS15240at 1581.416 kb on - strand, within RPSI07_RS15240at 1581.417 kb on - strand, within RPSI07_RS15240at 1581.458 kb on + strand, within RPSI07_RS15240at 1581.458 kb on + strand, within RPSI07_RS15240at 1581.458 kb on + strand, within RPSI07_RS15240at 1581.458 kb on + strand, within RPSI07_RS15240at 1581.459 kb on - strand, within RPSI07_RS15240at 1581.459 kb on - strand, within RPSI07_RS15240at 1581.459 kb on - strand, within RPSI07_RS15240at 1581.515 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.698 kb on + strand, within RPSI07_RS15240at 1581.699 kb on - strand, within RPSI07_RS15240at 1581.699 kb on - strand, within RPSI07_RS15240at 1581.699 kb on - strand, within RPSI07_RS15240at 1581.699 kb on - strand, within RPSI07_RS15240at 1581.699 kb on - strand, within RPSI07_RS15240at 1581.699 kb on - strand, within RPSI07_RS15240at 1581.935 kb on + strand, within RPSI07_RS15240at 1581.936 kb on - strand, within RPSI07_RS15240at 1581.938 kb on - strand, within RPSI07_RS15240at 1582.004 kb on + strand, within RPSI07_RS15240at 1582.005 kb on - strand, within RPSI07_RS15240at 1582.005 kb on - strand, within RPSI07_RS15240at 1582.005 kb on - strand, within RPSI07_RS15240at 1582.237 kb on + strand, within RPSI07_RS15240

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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1,579,534 - RPSI07_RS15235 0.45 -0.4
1,579,534 - RPSI07_RS15235 0.45 +0.2
1,579,534 - RPSI07_RS15235 0.45 +0.0
1,579,534 - RPSI07_RS15235 0.45 -0.7
1,579,534 - RPSI07_RS15235 0.45 +0.0
1,579,534 - RPSI07_RS15235 0.45 -0.4
1,579,620 + RPSI07_RS15235 0.51 -0.1
1,579,620 + RPSI07_RS15235 0.51 -0.1
1,579,620 + RPSI07_RS15235 0.51 +0.2
1,579,621 - RPSI07_RS15235 0.51 -0.3
1,579,621 - RPSI07_RS15235 0.51 -0.5
1,579,621 - RPSI07_RS15235 0.51 +0.2
1,579,621 - RPSI07_RS15235 0.51 -0.4
1,579,771 - RPSI07_RS15235 0.61 -0.1
1,579,771 - RPSI07_RS15235 0.61 -0.4
1,579,794 + RPSI07_RS15235 0.62 -0.1
1,579,794 + RPSI07_RS15235 0.62 -0.3
1,579,794 + RPSI07_RS15235 0.62 +0.2
1,579,795 - RPSI07_RS15235 0.62 -1.7
1,579,795 - RPSI07_RS15235 0.62 +0.0
1,579,795 - -0.7
1,579,796 - RPSI07_RS15235 0.63 -0.2
1,579,810 - RPSI07_RS15235 0.63 -0.5
1,579,810 - RPSI07_RS15235 0.63 +0.3
1,579,810 - RPSI07_RS15235 0.63 -0.3
1,580,121 + RPSI07_RS15235 0.84 +0.1
1,580,262 + -0.2
1,580,435 + +1.6
1,580,447 - -0.4
1,580,447 - -0.8
1,580,564 + -1.0
1,580,565 - -0.4
1,580,565 - -2.3
1,580,636 + +0.1
1,580,638 + +0.6
1,580,639 - +0.6
1,580,762 + RPSI07_RS15240 0.12 -1.5
1,580,762 + RPSI07_RS15240 0.12 +1.6
1,580,762 + RPSI07_RS15240 0.12 +0.5
1,580,762 + RPSI07_RS15240 0.12 -0.6
1,580,762 + RPSI07_RS15240 0.12 -0.1
1,580,762 + RPSI07_RS15240 0.12 -2.2
1,580,763 + RPSI07_RS15240 0.12 -0.7
1,580,763 - RPSI07_RS15240 0.12 -0.2
1,580,763 - RPSI07_RS15240 0.12 +0.0
1,580,763 - RPSI07_RS15240 0.12 -0.1
1,580,763 - RPSI07_RS15240 0.12 -1.3
1,580,763 - RPSI07_RS15240 0.12 -1.2
1,580,763 - RPSI07_RS15240 0.12 -1.0
1,580,763 - RPSI07_RS15240 0.12 -0.2
1,580,763 - RPSI07_RS15240 0.12 +0.4
1,580,763 - RPSI07_RS15240 0.12 +0.2
1,580,795 + RPSI07_RS15240 0.14 -0.2
1,580,795 + RPSI07_RS15240 0.14 -0.7
1,580,795 + RPSI07_RS15240 0.14 -1.7
1,580,795 + RPSI07_RS15240 0.14 +0.6
1,580,796 - RPSI07_RS15240 0.14 -0.5
1,580,885 + RPSI07_RS15240 0.18 +0.8
1,580,885 + RPSI07_RS15240 0.18 +0.1
1,580,886 - RPSI07_RS15240 0.19 +3.5
1,580,886 - RPSI07_RS15240 0.19 +0.1
1,580,886 - RPSI07_RS15240 0.19 -0.5
1,580,886 - RPSI07_RS15240 0.19 +0.2
1,580,886 - RPSI07_RS15240 0.19 +0.0
1,581,065 + RPSI07_RS15240 0.28 +0.4
1,581,065 + RPSI07_RS15240 0.28 -0.4
1,581,065 + RPSI07_RS15240 0.28 +0.2
1,581,065 + RPSI07_RS15240 0.28 +0.1
1,581,066 - RPSI07_RS15240 0.28 +0.6
1,581,248 + RPSI07_RS15240 0.38 -1.2
1,581,257 + RPSI07_RS15240 0.38 -0.3
1,581,258 - RPSI07_RS15240 0.38 -1.3
1,581,368 - RPSI07_RS15240 0.44 +0.9
1,581,413 + RPSI07_RS15240 0.46 +0.0
1,581,413 + RPSI07_RS15240 0.46 +0.6
1,581,413 + RPSI07_RS15240 0.46 -0.4
1,581,413 + RPSI07_RS15240 0.46 +0.1
1,581,413 + RPSI07_RS15240 0.46 -0.4
1,581,413 + RPSI07_RS15240 0.46 -0.3
1,581,413 + RPSI07_RS15240 0.46 -0.7
1,581,413 + RPSI07_RS15240 0.46 -0.5
1,581,413 + RPSI07_RS15240 0.46 -1.1
1,581,414 - RPSI07_RS15240 0.46 -0.1
1,581,414 - RPSI07_RS15240 0.46 +0.6
1,581,414 - RPSI07_RS15240 0.46 -0.2
1,581,414 - RPSI07_RS15240 0.46 +0.3
1,581,415 + RPSI07_RS15240 0.46 -1.0
1,581,415 + RPSI07_RS15240 0.46 +0.3
1,581,415 + RPSI07_RS15240 0.46 -0.2
1,581,415 + RPSI07_RS15240 0.46 -0.2
1,581,416 - RPSI07_RS15240 0.46 -0.1
1,581,416 - RPSI07_RS15240 0.46 +0.6
1,581,416 - RPSI07_RS15240 0.46 +0.2
1,581,417 - RPSI07_RS15240 0.46 +0.9
1,581,458 + RPSI07_RS15240 0.49 -0.6
1,581,458 + RPSI07_RS15240 0.49 +0.6
1,581,458 + RPSI07_RS15240 0.49 +0.3
1,581,458 + RPSI07_RS15240 0.49 -0.2
1,581,459 - RPSI07_RS15240 0.49 +0.1
1,581,459 - RPSI07_RS15240 0.49 -0.4
1,581,459 - RPSI07_RS15240 0.49 +0.2
1,581,515 + RPSI07_RS15240 0.52 +1.0
1,581,698 + RPSI07_RS15240 0.61 -0.2
1,581,698 + RPSI07_RS15240 0.61 -0.3
1,581,698 + RPSI07_RS15240 0.61 -0.2
1,581,698 + RPSI07_RS15240 0.61 +1.7
1,581,698 + RPSI07_RS15240 0.61 -0.7
1,581,698 + RPSI07_RS15240 0.61 -0.6
1,581,698 + RPSI07_RS15240 0.61 +1.8
1,581,699 - RPSI07_RS15240 0.61 +0.0
1,581,699 - RPSI07_RS15240 0.61 -0.4
1,581,699 - RPSI07_RS15240 0.61 -0.6
1,581,699 - RPSI07_RS15240 0.61 +0.1
1,581,699 - RPSI07_RS15240 0.61 -0.7
1,581,699 - RPSI07_RS15240 0.61 -0.2
1,581,935 + RPSI07_RS15240 0.74 +0.3
1,581,936 - RPSI07_RS15240 0.74 -0.4
1,581,938 - RPSI07_RS15240 0.74 +0.0
1,582,004 + RPSI07_RS15240 0.77 -0.2
1,582,005 - RPSI07_RS15240 0.77 -1.3
1,582,005 - RPSI07_RS15240 0.77 -0.2
1,582,005 - RPSI07_RS15240 0.77 -2.3
1,582,237 + RPSI07_RS15240 0.90 -0.3

Or see this region's nucleotide sequence