Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS07415 and RPSI07_RS24790 are separated by 115 nucleotides RPSI07_RS24790 and RPSI07_RS07420 are separated by 236 nucleotides RPSI07_RS07420 and RPSI07_RS07425 are separated by 110 nucleotides
RPSI07_RS07415: RPSI07_RS07415 - catalase, at 1,963,692 to 1,965,221
_RS07415
RPSI07_RS24790: RPSI07_RS24790 - hypothetical protein, at 1,965,337 to 1,965,561
_RS24790
RPSI07_RS07420: RPSI07_RS07420 - hypothetical protein, at 1,965,798 to 1,966,418
_RS07420
RPSI07_RS07425: RPSI07_RS07425 - aminotransferase class V-fold PLP-dependent enzyme, at 1,966,529 to 1,967,764
_RS07425
Position (kb) 1965
1966 Strain fitness (log2 ratio) -1
0
1 at 1964.383 kb on + strand, within RPSI07_RS07415 at 1964.383 kb on + strand, within RPSI07_RS07415 at 1964.383 kb on + strand, within RPSI07_RS07415 at 1964.383 kb on + strand, within RPSI07_RS07415 at 1964.383 kb on + strand, within RPSI07_RS07415 at 1964.383 kb on + strand, within RPSI07_RS07415 at 1964.384 kb on - strand, within RPSI07_RS07415 at 1964.384 kb on - strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.530 kb on + strand, within RPSI07_RS07415 at 1964.531 kb on - strand, within RPSI07_RS07415 at 1964.531 kb on - strand, within RPSI07_RS07415 at 1964.531 kb on - strand, within RPSI07_RS07415 at 1964.531 kb on - strand, within RPSI07_RS07415 at 1964.563 kb on + strand, within RPSI07_RS07415 at 1964.563 kb on + strand, within RPSI07_RS07415 at 1964.563 kb on + strand, within RPSI07_RS07415 at 1964.563 kb on + strand, within RPSI07_RS07415 at 1964.563 kb on + strand, within RPSI07_RS07415 at 1964.563 kb on + strand, within RPSI07_RS07415 at 1964.564 kb on - strand, within RPSI07_RS07415 at 1964.564 kb on - strand, within RPSI07_RS07415 at 1964.564 kb on - strand, within RPSI07_RS07415 at 1964.596 kb on + strand, within RPSI07_RS07415 at 1964.597 kb on - strand, within RPSI07_RS07415 at 1964.614 kb on + strand, within RPSI07_RS07415 at 1964.623 kb on + strand, within RPSI07_RS07415 at 1964.623 kb on + strand, within RPSI07_RS07415 at 1964.623 kb on + strand, within RPSI07_RS07415 at 1964.623 kb on + strand, within RPSI07_RS07415 at 1964.624 kb on - strand, within RPSI07_RS07415 at 1964.624 kb on - strand, within RPSI07_RS07415 at 1964.624 kb on - strand, within RPSI07_RS07415 at 1964.677 kb on + strand, within RPSI07_RS07415 at 1964.812 kb on + strand, within RPSI07_RS07415 at 1964.812 kb on + strand, within RPSI07_RS07415 at 1964.813 kb on - strand, within RPSI07_RS07415 at 1964.974 kb on + strand, within RPSI07_RS07415 at 1965.186 kb on + strand at 1965.187 kb on - strand at 1965.257 kb on - strand at 1965.257 kb on - strand at 1965.345 kb on + strand at 1965.376 kb on - strand, within RPSI07_RS24790 at 1965.522 kb on + strand, within RPSI07_RS24790 at 1965.522 kb on + strand, within RPSI07_RS24790 at 1965.523 kb on - strand, within RPSI07_RS24790 at 1965.533 kb on + strand, within RPSI07_RS24790 at 1965.534 kb on - strand, within RPSI07_RS24790 at 1965.751 kb on + strand at 1965.751 kb on + strand at 1965.752 kb on - strand at 1965.752 kb on - strand at 1965.752 kb on - strand at 1965.786 kb on + strand at 1965.786 kb on + strand at 1965.786 kb on + strand at 1965.787 kb on - strand at 1965.787 kb on - strand at 1965.787 kb on - strand at 1965.819 kb on - strand at 1965.828 kb on + strand at 1965.829 kb on - strand at 1965.829 kb on - strand at 1965.829 kb on - strand at 1965.873 kb on + strand, within RPSI07_RS07420 at 1965.933 kb on + strand, within RPSI07_RS07420 at 1965.933 kb on + strand, within RPSI07_RS07420 at 1965.934 kb on - strand, within RPSI07_RS07420 at 1965.934 kb on - strand, within RPSI07_RS07420 at 1966.001 kb on + strand, within RPSI07_RS07420 at 1966.001 kb on + strand, within RPSI07_RS07420 at 1966.002 kb on - strand, within RPSI07_RS07420 at 1966.002 kb on - strand, within RPSI07_RS07420 at 1966.035 kb on + strand, within RPSI07_RS07420 at 1966.035 kb on + strand, within RPSI07_RS07420 at 1966.056 kb on + strand, within RPSI07_RS07420 at 1966.056 kb on + strand, within RPSI07_RS07420 at 1966.056 kb on + strand, within RPSI07_RS07420 at 1966.056 kb on + strand, within RPSI07_RS07420 at 1966.057 kb on - strand, within RPSI07_RS07420 at 1966.257 kb on + strand, within RPSI07_RS07420 at 1966.258 kb on - strand, within RPSI07_RS07420 at 1966.258 kb on - strand, within RPSI07_RS07420 at 1966.372 kb on + strand at 1966.372 kb on + strand at 1966.372 kb on + strand at 1966.372 kb on + strand at 1966.372 kb on + strand at 1966.372 kb on + strand at 1966.372 kb on + strand at 1966.373 kb on - strand at 1966.416 kb on + strand at 1966.416 kb on + strand at 1966.416 kb on + strand at 1966.417 kb on - strand at 1966.417 kb on - strand at 1966.417 kb on - strand at 1966.417 kb on - strand at 1966.417 kb on - strand at 1966.417 kb on - strand at 1966.420 kb on + strand at 1966.420 kb on + strand at 1966.421 kb on - strand at 1966.525 kb on + strand at 1966.525 kb on + strand at 1966.526 kb on - strand at 1966.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin remove 1,964,383 + RPSI07_RS07415 0.45 +0.1 1,964,383 + RPSI07_RS07415 0.45 +0.6 1,964,383 + RPSI07_RS07415 0.45 -0.6 1,964,383 + RPSI07_RS07415 0.45 -0.0 1,964,383 + RPSI07_RS07415 0.45 +0.2 1,964,383 + RPSI07_RS07415 0.45 +0.6 1,964,384 - RPSI07_RS07415 0.45 +0.6 1,964,384 - RPSI07_RS07415 0.45 +0.4 1,964,530 + RPSI07_RS07415 0.55 -1.2 1,964,530 + RPSI07_RS07415 0.55 -0.6 1,964,530 + RPSI07_RS07415 0.55 -0.0 1,964,530 + RPSI07_RS07415 0.55 +0.2 1,964,530 + RPSI07_RS07415 0.55 -0.4 1,964,530 + RPSI07_RS07415 0.55 -0.8 1,964,530 + RPSI07_RS07415 0.55 +0.4 1,964,530 + RPSI07_RS07415 0.55 +0.6 1,964,530 + RPSI07_RS07415 0.55 +0.6 1,964,531 - RPSI07_RS07415 0.55 +0.5 1,964,531 - RPSI07_RS07415 0.55 -1.0 1,964,531 - RPSI07_RS07415 0.55 +1.6 1,964,531 - RPSI07_RS07415 0.55 -0.2 1,964,563 + RPSI07_RS07415 0.57 -1.0 1,964,563 + RPSI07_RS07415 0.57 -0.4 1,964,563 + RPSI07_RS07415 0.57 -0.1 1,964,563 + RPSI07_RS07415 0.57 +0.1 1,964,563 + RPSI07_RS07415 0.57 +0.6 1,964,563 + RPSI07_RS07415 0.57 -0.2 1,964,564 - RPSI07_RS07415 0.57 -0.0 1,964,564 - RPSI07_RS07415 0.57 -0.4 1,964,564 - RPSI07_RS07415 0.57 +0.6 1,964,596 + RPSI07_RS07415 0.59 +0.3 1,964,597 - RPSI07_RS07415 0.59 -0.2 1,964,614 + RPSI07_RS07415 0.60 -0.0 1,964,623 + RPSI07_RS07415 0.61 -0.8 1,964,623 + RPSI07_RS07415 0.61 +0.4 1,964,623 + RPSI07_RS07415 0.61 +0.9 1,964,623 + RPSI07_RS07415 0.61 -0.1 1,964,624 - RPSI07_RS07415 0.61 +0.1 1,964,624 - RPSI07_RS07415 0.61 +0.1 1,964,624 - RPSI07_RS07415 0.61 +0.4 1,964,677 + RPSI07_RS07415 0.64 -0.3 1,964,812 + RPSI07_RS07415 0.73 -0.3 1,964,812 + RPSI07_RS07415 0.73 -0.2 1,964,813 - RPSI07_RS07415 0.73 -0.4 1,964,974 + RPSI07_RS07415 0.84 -0.6 1,965,186 + -0.9 1,965,187 - -0.2 1,965,257 - +1.6 1,965,257 - -0.1 1,965,345 + -0.1 1,965,376 - RPSI07_RS24790 0.17 +0.5 1,965,522 + RPSI07_RS24790 0.82 -0.6 1,965,522 + RPSI07_RS24790 0.82 -0.3 1,965,523 - RPSI07_RS24790 0.83 +0.6 1,965,533 + RPSI07_RS24790 0.87 -0.6 1,965,534 - RPSI07_RS24790 0.88 -0.4 1,965,751 + +0.5 1,965,751 + -0.0 1,965,752 - -0.2 1,965,752 - +1.2 1,965,752 - +0.6 1,965,786 + +0.1 1,965,786 + +0.6 1,965,786 + +0.4 1,965,787 - -0.1 1,965,787 - +0.2 1,965,787 - -0.3 1,965,819 - -1.0 1,965,828 + +0.1 1,965,829 - -0.2 1,965,829 - +0.3 1,965,829 - +0.5 1,965,873 + RPSI07_RS07420 0.12 -0.4 1,965,933 + RPSI07_RS07420 0.22 +1.0 1,965,933 + RPSI07_RS07420 0.22 -0.4 1,965,934 - RPSI07_RS07420 0.22 -0.2 1,965,934 - RPSI07_RS07420 0.22 +0.1 1,966,001 + RPSI07_RS07420 0.33 -0.1 1,966,001 + RPSI07_RS07420 0.33 +0.2 1,966,002 - RPSI07_RS07420 0.33 -0.2 1,966,002 - RPSI07_RS07420 0.33 +1.2 1,966,035 + RPSI07_RS07420 0.38 +0.6 1,966,035 + RPSI07_RS07420 0.38 +0.1 1,966,056 + RPSI07_RS07420 0.42 -0.4 1,966,056 + RPSI07_RS07420 0.42 +0.2 1,966,056 + RPSI07_RS07420 0.42 +0.3 1,966,056 + RPSI07_RS07420 0.42 -0.4 1,966,057 - RPSI07_RS07420 0.42 +0.6 1,966,257 + RPSI07_RS07420 0.74 +0.2 1,966,258 - RPSI07_RS07420 0.74 -0.6 1,966,258 - RPSI07_RS07420 0.74 +1.0 1,966,372 + -0.1 1,966,372 + +0.7 1,966,372 + +0.3 1,966,372 + -0.7 1,966,372 + +0.5 1,966,372 + -0.6 1,966,372 + +0.3 1,966,373 - -0.7 1,966,416 + -0.0 1,966,416 + +0.8 1,966,416 + +0.5 1,966,417 - -0.1 1,966,417 - +1.0 1,966,417 - +0.3 1,966,417 - -0.4 1,966,417 - +0.1 1,966,417 - -0.7 1,966,420 + -0.5 1,966,420 + -1.2 1,966,421 - +0.1 1,966,525 + +1.2 1,966,525 + -0.5 1,966,526 - +1.6 1,966,526 - -0.1
Or see this region's nucleotide sequence