Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03245

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03240 and RPSI07_RS03245 are separated by 193 nucleotidesRPSI07_RS03245 and RPSI07_RS03250 are separated by 53 nucleotides RPSI07_RS03240: RPSI07_RS03240 - LysR family transcriptional regulator, at 884,935 to 885,873 _RS03240 RPSI07_RS03245: RPSI07_RS03245 - ABC transporter substrate-binding protein, at 886,067 to 887,611 _RS03245 RPSI07_RS03250: RPSI07_RS03250 - ABC transporter permease, at 887,665 to 888,582 _RS03250 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 885.182 kb on + strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.410 kb on + strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.506 kb on + strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.833 kb on + strandat 885.833 kb on + strandat 885.893 kb on + strandat 885.894 kb on - strandat 885.894 kb on - strandat 885.894 kb on - strandat 885.956 kb on + strandat 885.984 kb on + strandat 885.984 kb on + strandat 885.992 kb on + strandat 885.993 kb on - strandat 885.993 kb on - strandat 886.010 kb on + strandat 886.010 kb on + strandat 886.011 kb on - strandat 886.066 kb on + strandat 886.066 kb on + strandat 886.067 kb on - strandat 886.185 kb on - strandat 886.270 kb on + strand, within RPSI07_RS03245at 886.271 kb on - strand, within RPSI07_RS03245at 886.304 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.559 kb on + strand, within RPSI07_RS03245at 886.559 kb on + strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.652 kb on + strand, within RPSI07_RS03245at 886.652 kb on + strand, within RPSI07_RS03245at 886.653 kb on - strand, within RPSI07_RS03245at 886.653 kb on - strand, within RPSI07_RS03245at 886.653 kb on - strand, within RPSI07_RS03245at 886.709 kb on + strand, within RPSI07_RS03245at 886.709 kb on + strand, within RPSI07_RS03245at 886.710 kb on - strand, within RPSI07_RS03245at 886.710 kb on - strand, within RPSI07_RS03245at 886.710 kb on - strand, within RPSI07_RS03245at 886.985 kb on + strand, within RPSI07_RS03245at 886.986 kb on - strand, within RPSI07_RS03245at 886.986 kb on - strand, within RPSI07_RS03245at 887.057 kb on + strand, within RPSI07_RS03245at 887.057 kb on + strand, within RPSI07_RS03245at 887.105 kb on + strand, within RPSI07_RS03245at 887.106 kb on - strand, within RPSI07_RS03245at 887.174 kb on + strand, within RPSI07_RS03245at 887.174 kb on + strand, within RPSI07_RS03245at 887.174 kb on + strand, within RPSI07_RS03245at 887.174 kb on + strand, within RPSI07_RS03245at 887.174 kb on + strand, within RPSI07_RS03245at 887.174 kb on + strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.175 kb on - strand, within RPSI07_RS03245at 887.180 kb on + strand, within RPSI07_RS03245at 887.181 kb on - strand, within RPSI07_RS03245at 887.252 kb on + strand, within RPSI07_RS03245at 887.252 kb on + strand, within RPSI07_RS03245at 887.252 kb on + strand, within RPSI07_RS03245at 887.253 kb on - strand, within RPSI07_RS03245at 887.253 kb on - strand, within RPSI07_RS03245at 887.261 kb on + strand, within RPSI07_RS03245at 887.261 kb on + strand, within RPSI07_RS03245at 887.261 kb on + strand, within RPSI07_RS03245at 887.262 kb on - strand, within RPSI07_RS03245at 887.262 kb on - strand, within RPSI07_RS03245at 887.263 kb on - strand, within RPSI07_RS03245at 887.414 kb on + strand, within RPSI07_RS03245at 887.414 kb on + strand, within RPSI07_RS03245at 887.414 kb on + strand, within RPSI07_RS03245at 887.415 kb on - strand, within RPSI07_RS03245at 887.415 kb on - strand, within RPSI07_RS03245at 887.466 kb on - strandat 887.466 kb on - strandat 887.466 kb on - strandat 887.522 kb on + strandat 887.523 kb on - strandat 887.523 kb on - strandat 887.523 kb on - strandat 887.534 kb on + strandat 887.534 kb on + strandat 887.534 kb on + strandat 887.534 kb on + strandat 887.534 kb on + strandat 887.535 kb on - strandat 887.535 kb on - strandat 887.540 kb on + strandat 887.541 kb on - strandat 887.541 kb on - strandat 887.541 kb on - strandat 887.568 kb on - strandat 887.591 kb on + strandat 887.592 kb on - strandat 887.609 kb on + strandat 887.610 kb on - strandat 887.674 kb on + strandat 887.674 kb on + strandat 887.674 kb on + strandat 887.674 kb on + strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.825 kb on - strand, within RPSI07_RS03250at 887.854 kb on + strand, within RPSI07_RS03250at 887.855 kb on - strand, within RPSI07_RS03250at 888.028 kb on + strand, within RPSI07_RS03250at 888.205 kb on + strand, within RPSI07_RS03250at 888.205 kb on + strand, within RPSI07_RS03250at 888.206 kb on - strand, within RPSI07_RS03250at 888.208 kb on + strand, within RPSI07_RS03250at 888.208 kb on + strand, within RPSI07_RS03250at 888.271 kb on + strand, within RPSI07_RS03250at 888.271 kb on + strand, within RPSI07_RS03250at 888.272 kb on - strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.419 kb on - strand, within RPSI07_RS03250at 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.515 kb on - strandat 888.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
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885,182 + RPSI07_RS03240 0.26 +0.5
885,183 - RPSI07_RS03240 0.26 -0.8
885,183 - RPSI07_RS03240 0.26 -0.7
885,183 - RPSI07_RS03240 0.26 -1.0
885,183 - RPSI07_RS03240 0.26 -1.5
885,410 + RPSI07_RS03240 0.51 -0.6
885,411 - RPSI07_RS03240 0.51 -0.7
885,411 - RPSI07_RS03240 0.51 -1.1
885,411 - RPSI07_RS03240 0.51 -0.4
885,411 - RPSI07_RS03240 0.51 +0.5
885,506 + RPSI07_RS03240 0.61 -0.2
885,507 - RPSI07_RS03240 0.61 -1.9
885,507 - RPSI07_RS03240 0.61 -0.1
885,507 - RPSI07_RS03240 0.61 -1.0
885,507 - RPSI07_RS03240 0.61 -0.9
885,507 - RPSI07_RS03240 0.61 -0.7
885,507 - RPSI07_RS03240 0.61 -0.6
885,833 + -0.3
885,833 + -0.8
885,893 + +0.5
885,894 - -0.8
885,894 - -0.1
885,894 - -0.8
885,956 + -0.2
885,984 + -0.5
885,984 + +0.5
885,992 + -0.3
885,993 - -0.3
885,993 - +0.3
886,010 + -0.1
886,010 + -0.5
886,011 - +0.5
886,066 + +0.5
886,066 + -0.2
886,067 - +0.8
886,185 - -0.6
886,270 + RPSI07_RS03245 0.13 -0.6
886,271 - RPSI07_RS03245 0.13 +0.3
886,304 + RPSI07_RS03245 0.15 +0.5
886,433 + RPSI07_RS03245 0.24 -1.1
886,433 + RPSI07_RS03245 0.24 -1.1
886,433 + RPSI07_RS03245 0.24 +0.6
886,433 + RPSI07_RS03245 0.24 +0.7
886,433 + RPSI07_RS03245 0.24 -0.9
886,433 + RPSI07_RS03245 0.24 +0.4
886,434 - RPSI07_RS03245 0.24 -0.6
886,434 - RPSI07_RS03245 0.24 -0.3
886,434 - RPSI07_RS03245 0.24 -0.4
886,434 - RPSI07_RS03245 0.24 +0.1
886,434 - RPSI07_RS03245 0.24 -0.8
886,434 - RPSI07_RS03245 0.24 -0.6
886,434 - RPSI07_RS03245 0.24 -1.1
886,434 - RPSI07_RS03245 0.24 -0.3
886,434 - RPSI07_RS03245 0.24 -0.3
886,559 + RPSI07_RS03245 0.32 -0.4
886,559 + RPSI07_RS03245 0.32 +0.9
886,560 - RPSI07_RS03245 0.32 -0.2
886,560 - RPSI07_RS03245 0.32 +0.3
886,560 - RPSI07_RS03245 0.32 -0.8
886,560 - RPSI07_RS03245 0.32 -0.3
886,652 + RPSI07_RS03245 0.38 -0.4
886,652 + RPSI07_RS03245 0.38 +0.8
886,653 - RPSI07_RS03245 0.38 +0.7
886,653 - RPSI07_RS03245 0.38 -1.4
886,653 - RPSI07_RS03245 0.38 +0.8
886,709 + RPSI07_RS03245 0.42 +0.5
886,709 + RPSI07_RS03245 0.42 +0.4
886,710 - RPSI07_RS03245 0.42 -1.5
886,710 - RPSI07_RS03245 0.42 -0.1
886,710 - RPSI07_RS03245 0.42 -0.1
886,985 + RPSI07_RS03245 0.59 +0.5
886,986 - RPSI07_RS03245 0.59 +0.6
886,986 - RPSI07_RS03245 0.59 +0.5
887,057 + RPSI07_RS03245 0.64 -0.2
887,057 + RPSI07_RS03245 0.64 -2.1
887,105 + RPSI07_RS03245 0.67 +0.1
887,106 - RPSI07_RS03245 0.67 +0.5
887,174 + RPSI07_RS03245 0.72 +0.5
887,174 + RPSI07_RS03245 0.72 -1.2
887,174 + RPSI07_RS03245 0.72 -1.0
887,174 + RPSI07_RS03245 0.72 -0.2
887,174 + RPSI07_RS03245 0.72 +0.7
887,174 + RPSI07_RS03245 0.72 +0.8
887,175 - RPSI07_RS03245 0.72 +1.7
887,175 - RPSI07_RS03245 0.72 -0.5
887,175 - RPSI07_RS03245 0.72 +0.5
887,175 - RPSI07_RS03245 0.72 +0.5
887,175 - RPSI07_RS03245 0.72 -0.2
887,175 - RPSI07_RS03245 0.72 -0.7
887,175 - RPSI07_RS03245 0.72 +0.1
887,175 - RPSI07_RS03245 0.72 -1.8
887,175 - RPSI07_RS03245 0.72 -0.2
887,180 + RPSI07_RS03245 0.72 -0.0
887,181 - RPSI07_RS03245 0.72 +0.3
887,252 + RPSI07_RS03245 0.77 -0.3
887,252 + RPSI07_RS03245 0.77 +1.1
887,252 + RPSI07_RS03245 0.77 +0.2
887,253 - RPSI07_RS03245 0.77 +0.0
887,253 - RPSI07_RS03245 0.77 +0.5
887,261 + RPSI07_RS03245 0.77 +0.1
887,261 + RPSI07_RS03245 0.77 -0.5
887,261 + RPSI07_RS03245 0.77 -0.2
887,262 - RPSI07_RS03245 0.77 -0.1
887,262 - RPSI07_RS03245 0.77 +1.5
887,263 - RPSI07_RS03245 0.77 -0.3
887,414 + RPSI07_RS03245 0.87 +0.0
887,414 + RPSI07_RS03245 0.87 +0.5
887,414 + RPSI07_RS03245 0.87 -0.7
887,415 - RPSI07_RS03245 0.87 +0.3
887,415 - RPSI07_RS03245 0.87 -2.3
887,466 - -0.6
887,466 - +0.3
887,466 - +0.5
887,522 + +0.5
887,523 - +0.1
887,523 - +1.8
887,523 - +0.5
887,534 + -0.6
887,534 + -0.3
887,534 + +0.1
887,534 + -0.1
887,534 + +0.5
887,535 - +1.3
887,535 - -0.5
887,540 + -0.1
887,541 - -0.0
887,541 - -0.3
887,541 - -0.5
887,568 - +0.2
887,591 + +0.3
887,592 - -0.9
887,609 + -0.2
887,610 - -0.9
887,674 + -0.5
887,674 + +0.3
887,674 + +0.3
887,674 + -1.3
887,675 - +0.3
887,675 - -0.4
887,675 - -0.1
887,675 - +0.5
887,675 - +0.4
887,675 - -1.8
887,675 - -0.4
887,675 - -0.5
887,825 - RPSI07_RS03250 0.17 -0.4
887,854 + RPSI07_RS03250 0.21 +0.4
887,855 - RPSI07_RS03250 0.21 +0.3
888,028 + RPSI07_RS03250 0.40 -0.2
888,205 + RPSI07_RS03250 0.59 -0.5
888,205 + RPSI07_RS03250 0.59 +0.2
888,206 - RPSI07_RS03250 0.59 +0.2
888,208 + RPSI07_RS03250 0.59 -0.5
888,208 + RPSI07_RS03250 0.59 -1.2
888,271 + RPSI07_RS03250 0.66 -0.4
888,271 + RPSI07_RS03250 0.66 +0.1
888,272 - RPSI07_RS03250 0.66 +0.5
888,418 + RPSI07_RS03250 0.82 -0.9
888,418 + RPSI07_RS03250 0.82 -0.2
888,418 + RPSI07_RS03250 0.82 -0.6
888,418 + RPSI07_RS03250 0.82 -0.1
888,419 - RPSI07_RS03250 0.82 -0.2
888,514 + -0.2
888,514 + -0.3
888,514 + -1.1
888,514 + +0.0
888,514 + -0.6
888,514 + -0.2
888,514 + +0.3
888,514 + -0.1
888,515 - +0.5
888,515 - +1.5

Or see this region's nucleotide sequence