Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03240

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03235 and RPSI07_RS03240 are separated by 16 nucleotidesRPSI07_RS03240 and RPSI07_RS03245 are separated by 193 nucleotides RPSI07_RS03235: RPSI07_RS03235 - N-acetyl-gamma-glutamyl-phosphate reductase, at 883,983 to 884,918 _RS03235 RPSI07_RS03240: RPSI07_RS03240 - LysR family transcriptional regulator, at 884,935 to 885,873 _RS03240 RPSI07_RS03245: RPSI07_RS03245 - ABC transporter substrate-binding protein, at 886,067 to 887,611 _RS03245 Position (kb) 884 885 886Strain fitness (log2 ratio) -2 -1 0 1 2at 884.400 kb on + strand, within RPSI07_RS03235at 884.463 kb on + strand, within RPSI07_RS03235at 884.463 kb on + strand, within RPSI07_RS03235at 884.463 kb on + strand, within RPSI07_RS03235at 884.463 kb on + strand, within RPSI07_RS03235at 884.464 kb on - strand, within RPSI07_RS03235at 884.464 kb on - strand, within RPSI07_RS03235at 884.464 kb on - strand, within RPSI07_RS03235at 884.502 kb on + strand, within RPSI07_RS03235at 884.502 kb on + strand, within RPSI07_RS03235at 884.503 kb on - strand, within RPSI07_RS03235at 884.503 kb on - strand, within RPSI07_RS03235at 884.503 kb on - strand, within RPSI07_RS03235at 884.586 kb on + strand, within RPSI07_RS03235at 884.586 kb on + strand, within RPSI07_RS03235at 884.586 kb on + strand, within RPSI07_RS03235at 884.586 kb on + strand, within RPSI07_RS03235at 884.587 kb on - strand, within RPSI07_RS03235at 884.691 kb on + strand, within RPSI07_RS03235at 884.937 kb on - strandat 884.937 kb on - strandat 885.182 kb on + strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.183 kb on - strand, within RPSI07_RS03240at 885.410 kb on + strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.411 kb on - strand, within RPSI07_RS03240at 885.506 kb on + strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.507 kb on - strand, within RPSI07_RS03240at 885.833 kb on + strandat 885.833 kb on + strandat 885.893 kb on + strandat 885.894 kb on - strandat 885.894 kb on - strandat 885.894 kb on - strandat 885.956 kb on + strandat 885.984 kb on + strandat 885.984 kb on + strandat 885.992 kb on + strandat 885.993 kb on - strandat 885.993 kb on - strandat 886.010 kb on + strandat 886.010 kb on + strandat 886.011 kb on - strandat 886.066 kb on + strandat 886.066 kb on + strandat 886.067 kb on - strandat 886.185 kb on - strandat 886.270 kb on + strand, within RPSI07_RS03245at 886.271 kb on - strand, within RPSI07_RS03245at 886.304 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.433 kb on + strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.434 kb on - strand, within RPSI07_RS03245at 886.559 kb on + strand, within RPSI07_RS03245at 886.559 kb on + strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.560 kb on - strand, within RPSI07_RS03245at 886.652 kb on + strand, within RPSI07_RS03245at 886.652 kb on + strand, within RPSI07_RS03245at 886.653 kb on - strand, within RPSI07_RS03245at 886.653 kb on - strand, within RPSI07_RS03245at 886.653 kb on - strand, within RPSI07_RS03245at 886.709 kb on + strand, within RPSI07_RS03245at 886.709 kb on + strand, within RPSI07_RS03245at 886.710 kb on - strand, within RPSI07_RS03245at 886.710 kb on - strand, within RPSI07_RS03245at 886.710 kb on - strand, within RPSI07_RS03245

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
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884,400 + RPSI07_RS03235 0.45 +0.3
884,463 + RPSI07_RS03235 0.51 +0.0
884,463 + RPSI07_RS03235 0.51 +0.5
884,463 + RPSI07_RS03235 0.51 +0.5
884,463 + RPSI07_RS03235 0.51 +1.2
884,464 - RPSI07_RS03235 0.51 -0.4
884,464 - RPSI07_RS03235 0.51 -0.6
884,464 - RPSI07_RS03235 0.51 +0.5
884,502 + RPSI07_RS03235 0.55 -0.2
884,502 + RPSI07_RS03235 0.55 +1.1
884,503 - RPSI07_RS03235 0.56 -1.5
884,503 - RPSI07_RS03235 0.56 +0.5
884,503 - RPSI07_RS03235 0.56 -0.7
884,586 + RPSI07_RS03235 0.64 +2.1
884,586 + RPSI07_RS03235 0.64 +0.0
884,586 + RPSI07_RS03235 0.64 -0.4
884,586 + RPSI07_RS03235 0.64 +0.5
884,587 - RPSI07_RS03235 0.65 +0.5
884,691 + RPSI07_RS03235 0.76 +0.3
884,937 - -0.3
884,937 - +0.1
885,182 + RPSI07_RS03240 0.26 +0.5
885,183 - RPSI07_RS03240 0.26 -0.8
885,183 - RPSI07_RS03240 0.26 -0.7
885,183 - RPSI07_RS03240 0.26 -1.0
885,183 - RPSI07_RS03240 0.26 -1.5
885,410 + RPSI07_RS03240 0.51 -0.6
885,411 - RPSI07_RS03240 0.51 -0.7
885,411 - RPSI07_RS03240 0.51 -1.1
885,411 - RPSI07_RS03240 0.51 -0.4
885,411 - RPSI07_RS03240 0.51 +0.5
885,506 + RPSI07_RS03240 0.61 -0.2
885,507 - RPSI07_RS03240 0.61 -1.9
885,507 - RPSI07_RS03240 0.61 -0.1
885,507 - RPSI07_RS03240 0.61 -1.0
885,507 - RPSI07_RS03240 0.61 -0.9
885,507 - RPSI07_RS03240 0.61 -0.7
885,507 - RPSI07_RS03240 0.61 -0.6
885,833 + -0.3
885,833 + -0.8
885,893 + +0.5
885,894 - -0.8
885,894 - -0.1
885,894 - -0.8
885,956 + -0.2
885,984 + -0.5
885,984 + +0.5
885,992 + -0.3
885,993 - -0.3
885,993 - +0.3
886,010 + -0.1
886,010 + -0.5
886,011 - +0.5
886,066 + +0.5
886,066 + -0.2
886,067 - +0.8
886,185 - -0.6
886,270 + RPSI07_RS03245 0.13 -0.6
886,271 - RPSI07_RS03245 0.13 +0.3
886,304 + RPSI07_RS03245 0.15 +0.5
886,433 + RPSI07_RS03245 0.24 -1.1
886,433 + RPSI07_RS03245 0.24 -1.1
886,433 + RPSI07_RS03245 0.24 +0.6
886,433 + RPSI07_RS03245 0.24 +0.7
886,433 + RPSI07_RS03245 0.24 -0.9
886,433 + RPSI07_RS03245 0.24 +0.4
886,434 - RPSI07_RS03245 0.24 -0.6
886,434 - RPSI07_RS03245 0.24 -0.3
886,434 - RPSI07_RS03245 0.24 -0.4
886,434 - RPSI07_RS03245 0.24 +0.1
886,434 - RPSI07_RS03245 0.24 -0.8
886,434 - RPSI07_RS03245 0.24 -0.6
886,434 - RPSI07_RS03245 0.24 -1.1
886,434 - RPSI07_RS03245 0.24 -0.3
886,434 - RPSI07_RS03245 0.24 -0.3
886,559 + RPSI07_RS03245 0.32 -0.4
886,559 + RPSI07_RS03245 0.32 +0.9
886,560 - RPSI07_RS03245 0.32 -0.2
886,560 - RPSI07_RS03245 0.32 +0.3
886,560 - RPSI07_RS03245 0.32 -0.8
886,560 - RPSI07_RS03245 0.32 -0.3
886,652 + RPSI07_RS03245 0.38 -0.4
886,652 + RPSI07_RS03245 0.38 +0.8
886,653 - RPSI07_RS03245 0.38 +0.7
886,653 - RPSI07_RS03245 0.38 -1.4
886,653 - RPSI07_RS03245 0.38 +0.8
886,709 + RPSI07_RS03245 0.42 +0.5
886,709 + RPSI07_RS03245 0.42 +0.4
886,710 - RPSI07_RS03245 0.42 -1.5
886,710 - RPSI07_RS03245 0.42 -0.1
886,710 - RPSI07_RS03245 0.42 -0.1

Or see this region's nucleotide sequence