Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24300

Experiment: SMSA with Ralstonia_antibiotic_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02880 and RPSI07_RS02885 are separated by 21 nucleotidesRPSI07_RS02885 and RPSI07_RS24300 are separated by 28 nucleotides RPSI07_RS02880: RPSI07_RS02880 - hypothetical protein, at 795,142 to 796,086 _RS02880 RPSI07_RS02885: RPSI07_RS02885 - hypothetical protein, at 796,108 to 797,037 _RS02885 RPSI07_RS24300: RPSI07_RS24300 - hypothetical protein, at 797,066 to 798,124 _RS24300 Position (kb) 797 798 799Strain fitness (log2 ratio) -2 -1 0 1 2at 796.109 kb on + strandat 796.109 kb on + strandat 796.110 kb on - strandat 796.110 kb on - strandat 796.110 kb on - strandat 796.110 kb on - strandat 796.110 kb on - strandat 796.110 kb on - strandat 796.238 kb on + strand, within RPSI07_RS02885at 796.238 kb on + strand, within RPSI07_RS02885at 796.239 kb on - strand, within RPSI07_RS02885at 796.283 kb on - strand, within RPSI07_RS02885at 796.283 kb on - strand, within RPSI07_RS02885at 796.283 kb on - strand, within RPSI07_RS02885at 796.387 kb on + strand, within RPSI07_RS02885at 796.388 kb on - strand, within RPSI07_RS02885at 796.388 kb on - strand, within RPSI07_RS02885at 796.420 kb on + strand, within RPSI07_RS02885at 796.421 kb on - strand, within RPSI07_RS02885at 796.423 kb on - strand, within RPSI07_RS02885at 796.482 kb on - strand, within RPSI07_RS02885at 796.482 kb on - strand, within RPSI07_RS02885at 796.482 kb on - strand, within RPSI07_RS02885at 796.516 kb on - strand, within RPSI07_RS02885at 796.516 kb on - strand, within RPSI07_RS02885at 796.516 kb on - strand, within RPSI07_RS02885at 796.544 kb on + strand, within RPSI07_RS02885at 796.545 kb on - strand, within RPSI07_RS02885at 796.545 kb on - strand, within RPSI07_RS02885at 796.545 kb on - strand, within RPSI07_RS02885at 796.581 kb on + strand, within RPSI07_RS02885at 796.582 kb on + strand, within RPSI07_RS02885at 796.582 kb on + strand, within RPSI07_RS02885at 796.582 kb on + strand, within RPSI07_RS02885at 796.583 kb on - strand, within RPSI07_RS02885at 796.583 kb on - strand, within RPSI07_RS02885at 796.609 kb on + strand, within RPSI07_RS02885at 796.610 kb on - strand, within RPSI07_RS02885at 796.610 kb on - strand, within RPSI07_RS02885at 796.614 kb on + strand, within RPSI07_RS02885at 796.614 kb on + strand, within RPSI07_RS02885at 796.614 kb on + strand, within RPSI07_RS02885at 796.614 kb on + strand, within RPSI07_RS02885at 796.614 kb on + strand, within RPSI07_RS02885at 796.614 kb on + strand, within RPSI07_RS02885at 796.615 kb on - strand, within RPSI07_RS02885at 796.615 kb on - strand, within RPSI07_RS02885at 796.615 kb on - strandat 796.615 kb on - strand, within RPSI07_RS02885at 796.617 kb on + strand, within RPSI07_RS02885at 796.618 kb on - strand, within RPSI07_RS02885at 796.618 kb on - strand, within RPSI07_RS02885at 796.637 kb on + strand, within RPSI07_RS02885at 796.638 kb on - strand, within RPSI07_RS02885at 796.638 kb on - strand, within RPSI07_RS02885at 796.763 kb on + strand, within RPSI07_RS02885at 796.763 kb on + strand, within RPSI07_RS02885at 796.763 kb on + strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.764 kb on - strand, within RPSI07_RS02885at 796.838 kb on + strand, within RPSI07_RS02885at 796.839 kb on - strand, within RPSI07_RS02885at 796.876 kb on - strand, within RPSI07_RS02885at 796.889 kb on + strand, within RPSI07_RS02885at 796.889 kb on + strand, within RPSI07_RS02885at 796.889 kb on + strand, within RPSI07_RS02885at 796.889 kb on + strand, within RPSI07_RS02885at 796.890 kb on - strand, within RPSI07_RS02885at 796.924 kb on + strand, within RPSI07_RS02885at 796.924 kb on + strand, within RPSI07_RS02885at 796.924 kb on + strand, within RPSI07_RS02885at 796.924 kb on + strand, within RPSI07_RS02885at 796.925 kb on - strand, within RPSI07_RS02885at 796.931 kb on + strand, within RPSI07_RS02885at 796.931 kb on + strand, within RPSI07_RS02885at 796.932 kb on - strand, within RPSI07_RS02885at 796.932 kb on - strand, within RPSI07_RS02885at 796.934 kb on + strand, within RPSI07_RS02885at 796.934 kb on + strand, within RPSI07_RS02885at 796.956 kb on - strandat 796.997 kb on + strandat 797.128 kb on + strandat 797.161 kb on - strandat 797.240 kb on + strand, within RPSI07_RS24300at 797.240 kb on + strand, within RPSI07_RS24300at 797.240 kb on + strand, within RPSI07_RS24300at 797.241 kb on - strand, within RPSI07_RS24300at 797.280 kb on - strand, within RPSI07_RS24300at 797.280 kb on - strand, within RPSI07_RS24300at 797.286 kb on + strand, within RPSI07_RS24300at 797.296 kb on + strand, within RPSI07_RS24300at 797.296 kb on + strand, within RPSI07_RS24300at 797.297 kb on - strand, within RPSI07_RS24300at 797.297 kb on - strand, within RPSI07_RS24300at 797.297 kb on - strand, within RPSI07_RS24300at 797.297 kb on - strand, within RPSI07_RS24300at 797.300 kb on + strand, within RPSI07_RS24300at 797.300 kb on + strand, within RPSI07_RS24300at 797.300 kb on + strand, within RPSI07_RS24300at 797.300 kb on + strand, within RPSI07_RS24300at 797.300 kb on + strand, within RPSI07_RS24300at 797.301 kb on - strand, within RPSI07_RS24300at 797.377 kb on + strand, within RPSI07_RS24300at 797.377 kb on + strand, within RPSI07_RS24300at 797.378 kb on - strand, within RPSI07_RS24300at 797.382 kb on + strand, within RPSI07_RS24300at 797.382 kb on + strand, within RPSI07_RS24300at 797.383 kb on - strand, within RPSI07_RS24300at 797.489 kb on + strand, within RPSI07_RS24300at 797.490 kb on - strand, within RPSI07_RS24300at 797.542 kb on + strand, within RPSI07_RS24300at 797.647 kb on - strand, within RPSI07_RS24300at 797.715 kb on - strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.739 kb on + strand, within RPSI07_RS24300at 797.740 kb on - strand, within RPSI07_RS24300at 797.740 kb on - strand, within RPSI07_RS24300at 797.847 kb on + strand, within RPSI07_RS24300at 797.847 kb on + strand, within RPSI07_RS24300at 797.847 kb on + strand, within RPSI07_RS24300at 797.865 kb on + strand, within RPSI07_RS24300at 797.866 kb on - strand, within RPSI07_RS24300at 797.866 kb on - strand, within RPSI07_RS24300at 797.866 kb on - strand, within RPSI07_RS24300at 797.925 kb on + strand, within RPSI07_RS24300at 797.940 kb on + strand, within RPSI07_RS24300at 797.940 kb on + strand, within RPSI07_RS24300at 797.940 kb on + strand, within RPSI07_RS24300at 797.940 kb on + strand, within RPSI07_RS24300at 797.941 kb on - strand, within RPSI07_RS24300at 797.977 kb on + strand, within RPSI07_RS24300at 797.991 kb on + strand, within RPSI07_RS24300at 797.992 kb on - strand, within RPSI07_RS24300at 797.992 kb on - strand, within RPSI07_RS24300at 798.033 kb on + strandat 798.033 kb on + strandat 798.050 kb on + strandat 798.060 kb on - strandat 798.099 kb on + strandat 798.100 kb on - strandat 798.100 kb on - strandat 798.100 kb on - strandat 798.122 kb on - strandat 798.133 kb on + strandat 798.134 kb on - strandat 798.155 kb on - strandat 798.178 kb on + strandat 798.181 kb on + strandat 798.270 kb on + strandat 798.337 kb on - strandat 798.337 kb on - strandat 798.342 kb on - strandat 798.342 kb on - strandat 798.402 kb on + strandat 798.402 kb on + strandat 798.403 kb on - strandat 798.412 kb on + strandat 798.412 kb on + strandat 798.412 kb on + strandat 798.413 kb on - strandat 798.428 kb on - strandat 798.524 kb on + strandat 798.572 kb on - strandat 798.580 kb on - strandat 798.604 kb on + strandat 798.604 kb on + strandat 798.605 kb on - strandat 798.663 kb on + strandat 798.664 kb on - strandat 798.697 kb on - strandat 798.718 kb on - strandat 798.783 kb on + strandat 798.784 kb on - strandat 798.863 kb on - strandat 798.863 kb on - strandat 798.917 kb on + strandat 798.918 kb on - strandat 798.919 kb on + strandat 798.919 kb on + strandat 798.919 kb on + strandat 798.919 kb on + strandat 798.920 kb on - strandat 799.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix
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796,109 + +0.6
796,109 + +0.1
796,110 - -0.2
796,110 - +0.3
796,110 - -1.2
796,110 - +0.0
796,110 - -0.4
796,110 - +0.6
796,238 + RPSI07_RS02885 0.14 -0.9
796,238 + RPSI07_RS02885 0.14 -0.5
796,239 - RPSI07_RS02885 0.14 +0.1
796,283 - RPSI07_RS02885 0.19 -1.7
796,283 - RPSI07_RS02885 0.19 -1.4
796,283 - RPSI07_RS02885 0.19 +0.3
796,387 + RPSI07_RS02885 0.30 +0.6
796,388 - RPSI07_RS02885 0.30 -0.3
796,388 - RPSI07_RS02885 0.30 +1.1
796,420 + RPSI07_RS02885 0.34 -0.2
796,421 - RPSI07_RS02885 0.34 -0.3
796,423 - RPSI07_RS02885 0.34 -0.4
796,482 - RPSI07_RS02885 0.40 -0.1
796,482 - RPSI07_RS02885 0.40 -0.1
796,482 - RPSI07_RS02885 0.40 -0.3
796,516 - RPSI07_RS02885 0.44 -1.0
796,516 - RPSI07_RS02885 0.44 -0.1
796,516 - RPSI07_RS02885 0.44 +0.1
796,544 + RPSI07_RS02885 0.47 -1.0
796,545 - RPSI07_RS02885 0.47 -0.5
796,545 - RPSI07_RS02885 0.47 -0.2
796,545 - RPSI07_RS02885 0.47 -0.1
796,581 + RPSI07_RS02885 0.51 -0.1
796,582 + RPSI07_RS02885 0.51 -0.7
796,582 + RPSI07_RS02885 0.51 +0.1
796,582 + RPSI07_RS02885 0.51 -1.2
796,583 - RPSI07_RS02885 0.51 +0.3
796,583 - RPSI07_RS02885 0.51 +0.5
796,609 + RPSI07_RS02885 0.54 -0.5
796,610 - RPSI07_RS02885 0.54 -0.4
796,610 - RPSI07_RS02885 0.54 +0.6
796,614 + RPSI07_RS02885 0.54 -0.2
796,614 + RPSI07_RS02885 0.54 -0.2
796,614 + RPSI07_RS02885 0.54 +1.6
796,614 + RPSI07_RS02885 0.54 +0.4
796,614 + RPSI07_RS02885 0.54 +0.9
796,614 + RPSI07_RS02885 0.54 -0.4
796,615 - RPSI07_RS02885 0.55 -0.0
796,615 - RPSI07_RS02885 0.55 +0.1
796,615 - +0.6
796,615 - RPSI07_RS02885 0.55 -0.7
796,617 + RPSI07_RS02885 0.55 +0.1
796,618 - RPSI07_RS02885 0.55 +0.1
796,618 - RPSI07_RS02885 0.55 +0.6
796,637 + RPSI07_RS02885 0.57 +0.2
796,638 - RPSI07_RS02885 0.57 +0.0
796,638 - RPSI07_RS02885 0.57 +1.0
796,763 + RPSI07_RS02885 0.70 -0.5
796,763 + RPSI07_RS02885 0.70 -1.4
796,763 + RPSI07_RS02885 0.70 -0.1
796,764 - RPSI07_RS02885 0.71 -0.2
796,764 - RPSI07_RS02885 0.71 +0.6
796,764 - RPSI07_RS02885 0.71 +1.1
796,764 - RPSI07_RS02885 0.71 -0.4
796,764 - RPSI07_RS02885 0.71 +0.2
796,764 - RPSI07_RS02885 0.71 -0.4
796,764 - RPSI07_RS02885 0.71 +0.4
796,764 - RPSI07_RS02885 0.71 +0.6
796,838 + RPSI07_RS02885 0.78 +0.6
796,839 - RPSI07_RS02885 0.79 -0.8
796,876 - RPSI07_RS02885 0.83 +0.1
796,889 + RPSI07_RS02885 0.84 -0.7
796,889 + RPSI07_RS02885 0.84 -0.8
796,889 + RPSI07_RS02885 0.84 +0.2
796,889 + RPSI07_RS02885 0.84 -0.5
796,890 - RPSI07_RS02885 0.84 -0.4
796,924 + RPSI07_RS02885 0.88 -0.1
796,924 + RPSI07_RS02885 0.88 -0.9
796,924 + RPSI07_RS02885 0.88 -0.2
796,924 + RPSI07_RS02885 0.88 +1.3
796,925 - RPSI07_RS02885 0.88 -0.1
796,931 + RPSI07_RS02885 0.88 +0.3
796,931 + RPSI07_RS02885 0.88 -1.0
796,932 - RPSI07_RS02885 0.89 +0.6
796,932 - RPSI07_RS02885 0.89 -0.1
796,934 + RPSI07_RS02885 0.89 +0.6
796,934 + RPSI07_RS02885 0.89 +0.2
796,956 - -0.4
796,997 + -0.4
797,128 + +0.0
797,161 - +0.1
797,240 + RPSI07_RS24300 0.16 -1.4
797,240 + RPSI07_RS24300 0.16 -0.0
797,240 + RPSI07_RS24300 0.16 +0.1
797,241 - RPSI07_RS24300 0.17 -1.2
797,280 - RPSI07_RS24300 0.20 +0.2
797,280 - RPSI07_RS24300 0.20 +0.0
797,286 + RPSI07_RS24300 0.21 -0.2
797,296 + RPSI07_RS24300 0.22 -0.4
797,296 + RPSI07_RS24300 0.22 -1.2
797,297 - RPSI07_RS24300 0.22 -0.4
797,297 - RPSI07_RS24300 0.22 +0.1
797,297 - RPSI07_RS24300 0.22 -0.4
797,297 - RPSI07_RS24300 0.22 -0.1
797,300 + RPSI07_RS24300 0.22 +0.1
797,300 + RPSI07_RS24300 0.22 +0.1
797,300 + RPSI07_RS24300 0.22 -0.2
797,300 + RPSI07_RS24300 0.22 -0.7
797,300 + RPSI07_RS24300 0.22 +0.3
797,301 - RPSI07_RS24300 0.22 -0.5
797,377 + RPSI07_RS24300 0.29 +0.7
797,377 + RPSI07_RS24300 0.29 -0.2
797,378 - RPSI07_RS24300 0.29 +1.2
797,382 + RPSI07_RS24300 0.30 +0.6
797,382 + RPSI07_RS24300 0.30 +0.5
797,383 - RPSI07_RS24300 0.30 -0.1
797,489 + RPSI07_RS24300 0.40 +0.8
797,490 - RPSI07_RS24300 0.40 -2.0
797,542 + RPSI07_RS24300 0.45 +0.1
797,647 - RPSI07_RS24300 0.55 +1.6
797,715 - RPSI07_RS24300 0.61 +0.2
797,739 + RPSI07_RS24300 0.64 -0.4
797,739 + RPSI07_RS24300 0.64 -1.2
797,739 + RPSI07_RS24300 0.64 +1.0
797,739 + RPSI07_RS24300 0.64 +0.6
797,739 + RPSI07_RS24300 0.64 +0.6
797,739 + RPSI07_RS24300 0.64 -0.6
797,739 + RPSI07_RS24300 0.64 -0.3
797,739 + RPSI07_RS24300 0.64 -1.1
797,740 - RPSI07_RS24300 0.64 -0.1
797,740 - RPSI07_RS24300 0.64 +0.6
797,847 + RPSI07_RS24300 0.74 -1.4
797,847 + RPSI07_RS24300 0.74 +0.6
797,847 + RPSI07_RS24300 0.74 +0.0
797,865 + RPSI07_RS24300 0.75 +0.3
797,866 - RPSI07_RS24300 0.76 -0.9
797,866 - RPSI07_RS24300 0.76 +0.9
797,866 - RPSI07_RS24300 0.76 +0.6
797,925 + RPSI07_RS24300 0.81 +0.6
797,940 + RPSI07_RS24300 0.83 -0.2
797,940 + RPSI07_RS24300 0.83 +0.7
797,940 + RPSI07_RS24300 0.83 +1.6
797,940 + RPSI07_RS24300 0.83 -0.4
797,941 - RPSI07_RS24300 0.83 -1.7
797,977 + RPSI07_RS24300 0.86 +0.0
797,991 + RPSI07_RS24300 0.87 -0.2
797,992 - RPSI07_RS24300 0.87 -0.6
797,992 - RPSI07_RS24300 0.87 +0.0
798,033 + -0.3
798,033 + +0.6
798,050 + -0.3
798,060 - +0.3
798,099 + -0.4
798,100 - -0.0
798,100 - -0.9
798,100 - -0.6
798,122 - -0.7
798,133 + -0.3
798,134 - -0.4
798,155 - +0.1
798,178 + -0.5
798,181 + +0.6
798,270 + +2.2
798,337 - +1.6
798,337 - -0.2
798,342 - -2.0
798,342 - -0.1
798,402 + -0.2
798,402 + +0.4
798,403 - +0.2
798,412 + -0.5
798,412 + -0.6
798,412 + -0.4
798,413 - -0.1
798,428 - +0.6
798,524 + +0.4
798,572 - -0.6
798,580 - -0.1
798,604 + +0.6
798,604 + -0.3
798,605 - +0.2
798,663 + -0.4
798,664 - -0.1
798,697 - +1.0
798,718 - -0.8
798,783 + -0.6
798,784 - +0.1
798,863 - +0.3
798,863 - -1.4
798,917 + -0.2
798,918 - -0.3
798,919 + +0.1
798,919 + -0.7
798,919 + +0.1
798,919 + -1.9
798,920 - -0.4
799,017 + +1.3

Or see this region's nucleotide sequence