Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS13455 and RPSI07_RS13460 are separated by 34 nucleotides RPSI07_RS13460 and RPSI07_RS13465 overlap by 10 nucleotides RPSI07_RS13465 and RPSI07_RS13470 are separated by 85 nucleotides RPSI07_RS13470 and RPSI07_RS13475 are separated by 82 nucleotides
RPSI07_RS13455: RPSI07_RS13455 - DNA-dependent helicase, at 1,207,676 to 1,210,063
_RS13455
RPSI07_RS13460: RPSI07_RS13460 - hypothetical protein, at 1,210,098 to 1,210,895
_RS13460
RPSI07_RS13465: RPSI07_RS13465 - homoserine kinase, at 1,210,886 to 1,211,890
_RS13465
RPSI07_RS13470: RPSI07_RS13470 - membrane protein, at 1,211,976 to 1,212,404
_RS13470
RPSI07_RS13475: RPSI07_RS13475 - TIGR00730 family Rossman fold protein, at 1,212,487 to 1,213,449
_RS13475
Position (kb)
1210
1211
1212 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1210.156 kb on + strand at 1210.166 kb on - strand at 1210.178 kb on - strand, within RPSI07_RS13460 at 1210.435 kb on + strand, within RPSI07_RS13460 at 1210.435 kb on + strand, within RPSI07_RS13460 at 1210.435 kb on + strand, within RPSI07_RS13460 at 1210.436 kb on - strand, within RPSI07_RS13460 at 1210.436 kb on - strand, within RPSI07_RS13460 at 1210.465 kb on + strand, within RPSI07_RS13460 at 1210.465 kb on + strand, within RPSI07_RS13460 at 1210.465 kb on + strand, within RPSI07_RS13460 at 1210.465 kb on + strand, within RPSI07_RS13460 at 1210.580 kb on - strand, within RPSI07_RS13460 at 1210.789 kb on + strand, within RPSI07_RS13460 at 1210.861 kb on + strand at 1210.861 kb on + strand at 1210.861 kb on + strand at 1210.862 kb on - strand at 1210.907 kb on - strand at 1210.907 kb on - strand at 1212.440 kb on + strand at 1212.488 kb on + strand at 1212.488 kb on + strand at 1212.488 kb on + strand at 1212.495 kb on - strand at 1212.545 kb on + strand at 1212.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 1,210,156 + -0.3 1,210,166 - -0.7 1,210,178 - RPSI07_RS13460 0.10 +1.0 1,210,435 + RPSI07_RS13460 0.42 +0.3 1,210,435 + RPSI07_RS13460 0.42 +1.0 1,210,435 + RPSI07_RS13460 0.42 +2.4 1,210,436 - RPSI07_RS13460 0.42 -1.8 1,210,436 - RPSI07_RS13460 0.42 +0.5 1,210,465 + RPSI07_RS13460 0.46 -0.8 1,210,465 + RPSI07_RS13460 0.46 -1.2 1,210,465 + RPSI07_RS13460 0.46 +0.0 1,210,465 + RPSI07_RS13460 0.46 +0.4 1,210,580 - RPSI07_RS13460 0.60 +1.0 1,210,789 + RPSI07_RS13460 0.87 +0.2 1,210,861 + -0.0 1,210,861 + -0.1 1,210,861 + +0.7 1,210,862 - -0.6 1,210,907 - -0.6 1,210,907 - +2.0 1,212,440 + -1.6 1,212,488 + +1.0 1,212,488 + -0.0 1,212,488 + +0.4 1,212,495 - +0.5 1,212,545 + +0.8 1,212,555 - -0.1
Or see this region's nucleotide sequence