Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24030

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02055 and RPSI07_RS24030 are separated by 527 nucleotidesRPSI07_RS24030 and RPSI07_RS02065 are separated by 465 nucleotides RPSI07_RS02055: RPSI07_RS02055 - hypothetical protein, at 605,765 to 606,205 _RS02055 RPSI07_RS24030: RPSI07_RS24030 - hypothetical protein, at 606,733 to 607,430 _RS24030 RPSI07_RS02065: RPSI07_RS02065 - hemagglutinin, at 607,896 to 617,003 _RS02065 Position (kb) 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 605.796 kb on + strandat 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.048 kb on + strand, within RPSI07_RS02055at 606.049 kb on - strand, within RPSI07_RS02055at 606.049 kb on - strand, within RPSI07_RS02055at 606.049 kb on - strand, within RPSI07_RS02055at 606.049 kb on - strand, within RPSI07_RS02055at 606.049 kb on - strand, within RPSI07_RS02055at 606.049 kb on - strand, within RPSI07_RS02055at 606.220 kb on + strandat 606.416 kb on + strandat 606.416 kb on + strandat 606.416 kb on + strandat 606.416 kb on + strandat 606.416 kb on + strandat 606.416 kb on + strandat 606.416 kb on + strandat 606.417 kb on - strandat 606.417 kb on - strandat 606.448 kb on + strandat 606.583 kb on + strandat 606.583 kb on + strandat 606.753 kb on + strandat 606.754 kb on - strandat 606.754 kb on - strandat 606.815 kb on + strand, within RPSI07_RS24030at 606.845 kb on + strand, within RPSI07_RS24030at 606.846 kb on - strand, within RPSI07_RS24030at 606.846 kb on - strand, within RPSI07_RS24030at 606.846 kb on - strand, within RPSI07_RS24030at 606.846 kb on - strand, within RPSI07_RS24030at 606.846 kb on - strand, within RPSI07_RS24030at 606.846 kb on - strand, within RPSI07_RS24030at 606.887 kb on - strand, within RPSI07_RS24030at 606.887 kb on - strand, within RPSI07_RS24030at 606.887 kb on - strand, within RPSI07_RS24030at 607.010 kb on - strand, within RPSI07_RS24030at 607.109 kb on + strand, within RPSI07_RS24030at 607.109 kb on + strand, within RPSI07_RS24030at 607.135 kb on + strand, within RPSI07_RS24030at 607.135 kb on + strand, within RPSI07_RS24030at 607.136 kb on - strand, within RPSI07_RS24030at 607.136 kb on - strand, within RPSI07_RS24030at 607.136 kb on - strand, within RPSI07_RS24030at 607.145 kb on + strand, within RPSI07_RS24030at 607.145 kb on + strand, within RPSI07_RS24030at 607.145 kb on + strand, within RPSI07_RS24030at 607.145 kb on + strand, within RPSI07_RS24030at 607.146 kb on - strand, within RPSI07_RS24030at 607.230 kb on + strand, within RPSI07_RS24030at 607.231 kb on - strand, within RPSI07_RS24030at 607.297 kb on + strand, within RPSI07_RS24030at 607.297 kb on + strand, within RPSI07_RS24030at 607.297 kb on + strand, within RPSI07_RS24030at 607.297 kb on + strand, within RPSI07_RS24030at 607.297 kb on + strand, within RPSI07_RS24030at 607.297 kb on + strand, within RPSI07_RS24030at 607.298 kb on - strand, within RPSI07_RS24030at 607.298 kb on - strand, within RPSI07_RS24030at 607.298 kb on - strand, within RPSI07_RS24030at 607.298 kb on - strand, within RPSI07_RS24030at 607.298 kb on - strand, within RPSI07_RS24030at 607.298 kb on - strand, within RPSI07_RS24030at 607.301 kb on + strand, within RPSI07_RS24030at 607.301 kb on + strand, within RPSI07_RS24030at 607.302 kb on - strand, within RPSI07_RS24030at 607.302 kb on - strand, within RPSI07_RS24030at 607.368 kb on + strandat 607.368 kb on + strandat 607.368 kb on + strandat 607.368 kb on + strandat 607.368 kb on + strandat 607.369 kb on - strandat 607.369 kb on - strandat 607.471 kb on + strandat 607.807 kb on + strandat 607.807 kb on + strandat 607.807 kb on + strandat 607.837 kb on - strandat 608.205 kb on + strandat 608.205 kb on + strandat 608.205 kb on + strandat 608.205 kb on + strandat 608.206 kb on - strandat 608.206 kb on - strandat 608.206 kb on - strandat 608.237 kb on + strandat 608.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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605,796 + +0.3
606,048 + RPSI07_RS02055 0.64 +1.7
606,048 + RPSI07_RS02055 0.64 -0.2
606,048 + RPSI07_RS02055 0.64 +0.9
606,048 + RPSI07_RS02055 0.64 -1.3
606,048 + RPSI07_RS02055 0.64 -0.5
606,048 + RPSI07_RS02055 0.64 +2.5
606,048 + RPSI07_RS02055 0.64 +0.2
606,048 + RPSI07_RS02055 0.64 -0.1
606,049 - RPSI07_RS02055 0.64 -1.3
606,049 - RPSI07_RS02055 0.64 -1.1
606,049 - RPSI07_RS02055 0.64 -0.5
606,049 - RPSI07_RS02055 0.64 -0.3
606,049 - RPSI07_RS02055 0.64 -2.0
606,049 - RPSI07_RS02055 0.64 +0.5
606,220 + -1.7
606,416 + +0.3
606,416 + +1.9
606,416 + -0.8
606,416 + -0.6
606,416 + +0.6
606,416 + +1.5
606,416 + -0.5
606,417 - -2.3
606,417 - -0.1
606,448 + +2.5
606,583 + +1.0
606,583 + +0.6
606,753 + -0.1
606,754 - +0.2
606,754 - +0.9
606,815 + RPSI07_RS24030 0.12 -0.7
606,845 + RPSI07_RS24030 0.16 -0.1
606,846 - RPSI07_RS24030 0.16 -0.8
606,846 - RPSI07_RS24030 0.16 +1.9
606,846 - RPSI07_RS24030 0.16 +1.9
606,846 - RPSI07_RS24030 0.16 +0.8
606,846 - RPSI07_RS24030 0.16 -0.7
606,846 - RPSI07_RS24030 0.16 +0.7
606,887 - RPSI07_RS24030 0.22 -1.3
606,887 - RPSI07_RS24030 0.22 -1.7
606,887 - RPSI07_RS24030 0.22 +0.9
607,010 - RPSI07_RS24030 0.40 +1.5
607,109 + RPSI07_RS24030 0.54 -1.4
607,109 + RPSI07_RS24030 0.54 +0.2
607,135 + RPSI07_RS24030 0.58 +1.7
607,135 + RPSI07_RS24030 0.58 -0.2
607,136 - RPSI07_RS24030 0.58 -1.7
607,136 - RPSI07_RS24030 0.58 +1.1
607,136 - RPSI07_RS24030 0.58 +1.2
607,145 + RPSI07_RS24030 0.59 +1.0
607,145 + RPSI07_RS24030 0.59 +1.1
607,145 + RPSI07_RS24030 0.59 -2.4
607,145 + RPSI07_RS24030 0.59 +1.1
607,146 - RPSI07_RS24030 0.59 -0.9
607,230 + RPSI07_RS24030 0.71 -1.6
607,231 - RPSI07_RS24030 0.71 -1.1
607,297 + RPSI07_RS24030 0.81 -1.1
607,297 + RPSI07_RS24030 0.81 -0.5
607,297 + RPSI07_RS24030 0.81 -0.7
607,297 + RPSI07_RS24030 0.81 -0.9
607,297 + RPSI07_RS24030 0.81 -1.0
607,297 + RPSI07_RS24030 0.81 +1.8
607,298 - RPSI07_RS24030 0.81 +1.7
607,298 - RPSI07_RS24030 0.81 +0.3
607,298 - RPSI07_RS24030 0.81 +1.7
607,298 - RPSI07_RS24030 0.81 -0.2
607,298 - RPSI07_RS24030 0.81 -0.1
607,298 - RPSI07_RS24030 0.81 +0.9
607,301 + RPSI07_RS24030 0.81 +0.6
607,301 + RPSI07_RS24030 0.81 -0.2
607,302 - RPSI07_RS24030 0.82 +0.0
607,302 - RPSI07_RS24030 0.82 -0.8
607,368 + +0.2
607,368 + -0.9
607,368 + +0.9
607,368 + -1.7
607,368 + -0.7
607,369 - -2.2
607,369 - +0.9
607,471 + -2.2
607,807 + -1.7
607,807 + +0.4
607,807 + -0.9
607,837 - +0.9
608,205 + -0.1
608,205 + +0.3
608,205 + +0.1
608,205 + +1.5
608,206 - -2.3
608,206 - -0.9
608,206 - -0.1
608,237 + +0.9
608,238 - -0.9

Or see this region's nucleotide sequence