Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17810

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17805 and RPSI07_RS17810 are separated by 172 nucleotidesRPSI07_RS17810 and RPSI07_RS17815 are separated by 100 nucleotides RPSI07_RS17805: RPSI07_RS17805 - HAD family hydrolase, at 2,199,409 to 2,200,296 _RS17805 RPSI07_RS17810: RPSI07_RS17810 - hypothetical protein, at 2,200,469 to 2,200,795 _RS17810 RPSI07_RS17815: RPSI07_RS17815 - nitrogen regulation protein NR(I), at 2,200,896 to 2,202,407 _RS17815 Position (kb) 2200 2201Strain fitness (log2 ratio) -2 -1 0 1at 2199.586 kb on + strand, within RPSI07_RS17805at 2199.586 kb on + strand, within RPSI07_RS17805at 2199.586 kb on + strand, within RPSI07_RS17805at 2199.587 kb on - strand, within RPSI07_RS17805at 2199.928 kb on - strand, within RPSI07_RS17805at 2200.201 kb on + strand, within RPSI07_RS17805at 2200.611 kb on - strand, within RPSI07_RS17810at 2201.167 kb on + strand, within RPSI07_RS17815at 2201.167 kb on + strand, within RPSI07_RS17815

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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2,199,586 + RPSI07_RS17805 0.20 +0.1
2,199,586 + RPSI07_RS17805 0.20 -2.5
2,199,586 + RPSI07_RS17805 0.20 -0.8
2,199,587 - RPSI07_RS17805 0.20 -2.1
2,199,928 - RPSI07_RS17805 0.58 -0.3
2,200,201 + RPSI07_RS17805 0.89 +0.1
2,200,611 - RPSI07_RS17810 0.43 -0.9
2,201,167 + RPSI07_RS17815 0.18 -1.6
2,201,167 + RPSI07_RS17815 0.18 -0.3

Or see this region's nucleotide sequence