Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17690

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17680 and RPSI07_RS17685 overlap by 4 nucleotidesRPSI07_RS17685 and RPSI07_RS17690 are separated by 207 nucleotidesRPSI07_RS17690 and RPSI07_RS17695 are separated by 89 nucleotides RPSI07_RS17680: RPSI07_RS17680 - transcription termination/antitermination protein NusA, at 2,170,736 to 2,172,211 _RS17680 RPSI07_RS17685: RPSI07_RS17685 - ribosome maturation factor RimP, at 2,172,208 to 2,172,696 _RS17685 RPSI07_RS17690: RPSI07_RS17690 - 23S rRNA pseudouridylate synthase B, at 2,172,904 to 2,174,688 _RS17690 RPSI07_RS17695: RPSI07_RS17695 - SMC-Scp complex subunit ScpB, at 2,174,778 to 2,175,671 _RS17695 Position (kb) 2172 2173 2174 2175Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2173.091 kb on + strand, within RPSI07_RS17690at 2173.512 kb on - strand, within RPSI07_RS17690at 2173.847 kb on + strand, within RPSI07_RS17690at 2174.120 kb on + strand, within RPSI07_RS17690at 2174.121 kb on - strand, within RPSI07_RS17690at 2174.139 kb on - strand, within RPSI07_RS17690at 2174.467 kb on - strand, within RPSI07_RS17690at 2174.688 kb on + strandat 2174.688 kb on + strandat 2174.688 kb on + strandat 2174.689 kb on - strandat 2174.689 kb on - strandat 2174.689 kb on - strandat 2174.689 kb on - strandat 2174.695 kb on - strandat 2174.695 kb on - strandat 2174.695 kb on - strandat 2174.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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2,173,091 + RPSI07_RS17690 0.10 +0.6
2,173,512 - RPSI07_RS17690 0.34 +0.5
2,173,847 + RPSI07_RS17690 0.53 +0.9
2,174,120 + RPSI07_RS17690 0.68 +1.0
2,174,121 - RPSI07_RS17690 0.68 +3.7
2,174,139 - RPSI07_RS17690 0.69 +4.8
2,174,467 - RPSI07_RS17690 0.88 +3.6
2,174,688 + +1.0
2,174,688 + +3.6
2,174,688 + +2.8
2,174,689 - +4.8
2,174,689 - +2.9
2,174,689 - +3.2
2,174,689 - +4.0
2,174,695 - +3.5
2,174,695 - +3.0
2,174,695 - +3.9
2,174,779 + +3.9

Or see this region's nucleotide sequence