Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06895

Experiment: SMSA no antibiotic control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA no antibiotic control
1,836,683	+		RPSI07_RS24675	0.67	-0.8
1,836,683	+		RPSI07_RS24675	0.67	-1.0
1,836,683	+		RPSI07_RS24675	0.67	+0.4
1,836,684	-		RPSI07_RS24675	0.67	+2.3
1,836,684	-		RPSI07_RS24675	0.67	+0.7
1,836,684	-		RPSI07_RS24675	0.67	-1.7
1,836,684	-		RPSI07_RS24675	0.67	-3.1
1,836,684	-		RPSI07_RS24675	0.67	-0.9
1,836,684	-		RPSI07_RS24675	0.67	-0.3
1,836,684	-		RPSI07_RS24675	0.67	-0.4
1,836,684	-		RPSI07_RS24675	0.67	-0.8
1,836,692	+		RPSI07_RS24675	0.69	-1.1
1,836,692	+		RPSI07_RS24675	0.69	-0.8
1,836,692	+		RPSI07_RS24675	0.69	+1.6
1,836,692	+		RPSI07_RS24675	0.69	+1.9
1,836,693	-		RPSI07_RS24675	0.70	-1.7
1,836,793	+				+0.4
1,836,794	-				-0.9
1,836,794	-				-1.4
1,836,876	+				-0.5
1,836,876	+				-0.6
1,836,877	-				+3.2
1,836,877	-				-2.1
1,836,904	+				-0.7
1,836,904	+				-0.4
1,836,904	+				+2.9
1,836,904	+				-0.8
1,836,904	+				-1.4
1,836,905	-				+0.4
1,836,905	-				+0.6
1,836,979	+				+1.8
1,836,979	+				-0.8
1,836,979	+				+0.1
1,836,979	+				+1.3
1,836,979	+				-1.7
1,836,980	-				+0.2
1,836,980	-				-0.2
1,836,980	-				+0.1
1,836,980	-				+0.6
1,836,980	-				-2.0
1,836,980	-				-0.2
1,836,980	-				+0.2
1,836,980	-				-2.0
1,836,996	+				+0.1
1,836,996	+				-0.3
1,836,996	+				+1.4
1,836,996	+				+1.9
1,836,996	+				-0.5
1,836,997	-				+0.7
1,836,997	-				+0.9
1,836,997	-				-3.3
1,836,997	-				+0.9
1,837,044	+				+0.4
1,837,044	+				-1.3
1,837,045	-				-1.8
1,837,045	-				-0.4
1,837,045	-				-0.5
1,837,046	+				+0.9
1,837,046	+				+1.6
1,837,046	+				+0.1
1,837,046	+				+1.6
1,837,046	+				+0.9
1,837,046	+				+0.9
1,837,046	+				-0.5
1,837,046	+				+2.5
1,837,046	+				-1.0
1,837,046	+				+0.1
1,837,046	+				+0.3
1,837,046	+				-1.7
1,837,047	-				-1.2
1,837,047	-				+1.0
1,837,047	-				+0.3
1,837,047	-				-1.9
1,837,047	-				-0.5
1,837,047	-				+2.9
1,837,047	-				+0.7
1,837,047	-				+0.6
1,837,047	-				-0.0
1,837,047	-				-2.1
1,837,047	-				-0.2
1,837,047	-				-0.8
1,837,047	-				-0.6
1,837,047	-				-1.0
1,837,125	+				-0.0
1,837,126	-				-1.6
1,837,162	+				-0.1
1,837,162	+				+2.0
1,837,162	+				+2.0
1,837,194	+				-0.5
1,837,213	+				-0.1
1,837,213	+				+1.1
1,837,213	+				+2.5
1,837,213	+				-1.8
1,837,214	-				+1.9
1,837,251	+				+1.2
1,837,251	+				+0.9
1,837,251	+				+0.9
1,837,251	+				-1.8
1,837,252	-				+0.4
1,837,252	-				+0.9
1,837,252	-				+1.0
1,837,252	-				+0.4
1,837,281	+				+0.9
1,837,371	-				-0.4
1,837,386	+				-0.2
1,837,421	+				+1.9
1,837,439	+				+1.1
1,837,489	+				+0.6
1,837,489	+				-0.7
1,837,489	+				-0.1
1,837,489	+				+0.5
1,837,489	+				-0.9
1,837,489	+				+0.2
1,837,489	+				+0.8
1,837,489	+				+1.4
1,837,490	-				-1.3
1,837,490	-				+0.1
1,837,490	-				+1.8
1,837,490	-				-1.3
1,837,490	-				-0.7
1,837,491	+				-0.6
1,837,491	+				+1.5
1,837,491	+				-3.3
1,837,491	+				-0.3
1,837,491	+				+0.6
1,837,491	+				-1.2
1,837,491	+				-0.8
1,837,491	+				-0.1
1,837,491	+				+0.9
1,837,491	+				-1.1
1,837,491	+				+0.7
1,837,491	+				+0.4
1,837,492	-				-1.2
1,837,492	-				-0.9
1,837,492	-				+0.3
1,837,492	-				-1.1
1,837,492	-				+0.0
1,837,492	-				-1.0
1,837,492	-				-0.5
1,837,492	-				+0.3
1,837,492	-				-0.7
1,837,492	-				+0.2
1,837,492	-				-0.4
1,837,492	-				-0.1
1,837,492	-				-1.4
1,837,492	-				+0.4
1,837,506	+				+0.8
1,837,506	+				+0.1
1,837,506	+				+0.9
1,837,506	+				+0.1
1,837,608	+				-0.7
1,837,609	-				-0.4
1,837,609	-				+0.7
1,837,609	-				+0.4
1,837,615	+				+1.0
1,837,615	+				-1.2
1,837,615	+				-1.0
1,837,615	+				-0.2
1,837,615	+				+0.1
1,837,615	+				-1.8
1,837,616	-				+0.7
1,837,616	-				-1.5
1,837,616	-				-1.7
1,837,616	-				-2.0
1,837,657	+				-0.1
1,837,658	-				-0.5
1,837,658	-				+2.6
1,837,713	+				-0.8
1,837,714	-				+0.2
1,837,726	+				+1.5
1,837,734	+				+1.1
1,837,735	-				-0.5
1,837,816	+		RPSI07_RS06895	0.18	+0.7
1,837,816	+		RPSI07_RS06895	0.18	+3.0
1,837,816	+		RPSI07_RS06895	0.18	-0.3
1,837,817	-		RPSI07_RS06895	0.18	-2.9
1,837,817	-		RPSI07_RS06895	0.18	+0.0
1,837,817	-		RPSI07_RS06895	0.18	-0.7
1,837,862	+		RPSI07_RS06895	0.22	-0.1
1,837,862	+		RPSI07_RS06895	0.22	+0.9
1,837,862	+		RPSI07_RS06895	0.22	-1.1
1,837,862	+		RPSI07_RS06895	0.22	-0.6
1,837,862	+		RPSI07_RS06895	0.22	+0.2
1,837,863	-		RPSI07_RS06895	0.22	+1.9
1,837,863	-		RPSI07_RS06895	0.22	-0.0
1,837,863	-		RPSI07_RS06895	0.22	-0.1
1,837,863	-		RPSI07_RS06895	0.22	-0.5
1,837,863	-		RPSI07_RS06895	0.22	+1.3
1,837,867	+		RPSI07_RS06895	0.23	+0.5
1,837,867	+		RPSI07_RS06895	0.23	-0.4
1,837,867	+		RPSI07_RS06895	0.23	-0.2
1,837,867	+		RPSI07_RS06895	0.23	-0.7
1,837,868	-		RPSI07_RS06895	0.23	+0.7
1,837,868	-		RPSI07_RS06895	0.23	+0.3
1,837,868	-		RPSI07_RS06895	0.23	+0.2
1,837,868	-		RPSI07_RS06895	0.23	+1.9
1,837,901	+		RPSI07_RS06895	0.26	-0.6
1,837,901	+		RPSI07_RS06895	0.26	+0.3
1,837,902	-		RPSI07_RS06895	0.26	-0.4
1,837,902	-		RPSI07_RS06895	0.26	-1.6
1,837,902	-		RPSI07_RS06895	0.26	+1.2
1,837,902	-		RPSI07_RS06895	0.26	-2.6
1,837,903	-		RPSI07_RS06895	0.26	-0.8
1,837,969	+		RPSI07_RS06895	0.33	+0.0
1,837,969	+		RPSI07_RS06895	0.33	-0.9
1,837,969	+		RPSI07_RS06895	0.33	-0.1
1,837,969	+		RPSI07_RS06895	0.33	-0.6
1,837,969	+		RPSI07_RS06895	0.33	-0.1
1,837,969	+		RPSI07_RS06895	0.33	-0.1
1,837,969	+		RPSI07_RS06895	0.33	+0.2
1,837,969	+		RPSI07_RS06895	0.33	-0.2
1,837,969	+		RPSI07_RS06895	0.33	+0.2
1,837,969	+		RPSI07_RS06895	0.33	+3.1
1,837,969	+		RPSI07_RS06895	0.33	+0.5
1,837,969	+		RPSI07_RS06895	0.33	-0.9
1,837,969	+		RPSI07_RS06895	0.33	+1.6
1,837,970	-		RPSI07_RS06895	0.33	-1.1
1,837,970	-		RPSI07_RS06895	0.33	-0.5
1,837,970	-		RPSI07_RS06895	0.33	-1.0
1,837,970	-		RPSI07_RS06895	0.33	+0.0
1,837,970	-		RPSI07_RS06895	0.33	+0.1
1,837,970	-		RPSI07_RS06895	0.33	+0.7
1,837,970	-		RPSI07_RS06895	0.33	-1.3
1,837,970	-		RPSI07_RS06895	0.33	+1.1
1,837,970	-		RPSI07_RS06895	0.33	+0.3
1,838,100	+		RPSI07_RS06895	0.45	-1.9
1,838,121	+		RPSI07_RS06895	0.47	+0.3
1,838,121	+		RPSI07_RS06895	0.47	+1.1
1,838,121	+		RPSI07_RS06895	0.47	-1.4
1,838,121	+		RPSI07_RS06895	0.47	-0.3
1,838,122	-		RPSI07_RS06895	0.48	+0.2
1,838,122	-		RPSI07_RS06895	0.48	-2.5
1,838,122	-		RPSI07_RS06895	0.48	-1.8
1,838,156	+		RPSI07_RS06895	0.51	-0.3
1,838,156	+		RPSI07_RS06895	0.51	+1.6
1,838,156	+		RPSI07_RS06895	0.51	+0.1
1,838,156	+		RPSI07_RS06895	0.51	-0.3
1,838,156	+		RPSI07_RS06895	0.51	+0.6
1,838,156	+		RPSI07_RS06895	0.51	+0.9
1,838,156	+		RPSI07_RS06895	0.51	-0.7
1,838,157	-		RPSI07_RS06895	0.51	-1.3
1,838,157	-		RPSI07_RS06895	0.51	+0.4
1,838,157	-		RPSI07_RS06895	0.51	+0.9
1,838,157	-		RPSI07_RS06895	0.51	-0.6
1,838,157	-		RPSI07_RS06895	0.51	-1.2
1,838,255	+		RPSI07_RS06895	0.61	+0.3
1,838,255	+		RPSI07_RS06895	0.61	+0.1
1,838,255	+		RPSI07_RS06895	0.61	+0.7
1,838,255	+		RPSI07_RS06895	0.61	-0.4
1,838,255	+		RPSI07_RS06895	0.61	+0.2
1,838,255	+		RPSI07_RS06895	0.61	-0.0
1,838,255	+		RPSI07_RS06895	0.61	-0.1
1,838,256	-		RPSI07_RS06895	0.61	-2.4
1,838,256	-		RPSI07_RS06895	0.61	-2.0
1,838,256	-		RPSI07_RS06895	0.61	-3.2
1,838,268	+		RPSI07_RS06895	0.62	-0.4
1,838,268	+		RPSI07_RS06895	0.62	-1.7
1,838,268	+		RPSI07_RS06895	0.62	+0.7
1,838,268	+		RPSI07_RS06895	0.62	-1.2
1,838,268	+		RPSI07_RS06895	0.62	-0.6
1,838,268	+		RPSI07_RS06895	0.62	+0.3
1,838,268	+		RPSI07_RS06895	0.62	+2.8
1,838,268	+		RPSI07_RS06895	0.62	-2.1
1,838,269	-		RPSI07_RS06895	0.62	-0.1
1,838,269	-		RPSI07_RS06895	0.62	+0.9
1,838,269	-		RPSI07_RS06895	0.62	+0.9
1,838,269	-		RPSI07_RS06895	0.62	+1.9
1,838,270	+		RPSI07_RS06895	0.62	+0.1
1,838,270	+		RPSI07_RS06895	0.62	+0.8
1,838,271	-		RPSI07_RS06895	0.62	+1.4
1,838,271	-		RPSI07_RS06895	0.62	+0.8
1,838,271	-		RPSI07_RS06895	0.62	+1.0
1,838,284	+		RPSI07_RS06895	0.63	-1.8
1,838,312	-		RPSI07_RS06895	0.66	+0.1
1,838,377	-		RPSI07_RS06895	0.73	+0.9
1,838,502	+		RPSI07_RS06895	0.85	+0.3
1,838,502	+		RPSI07_RS06895	0.85	+1.9
1,838,502	+		RPSI07_RS06895	0.85	+3.5
1,838,502	+		RPSI07_RS06895	0.85	-0.0
1,838,502	+		RPSI07_RS06895	0.85	+0.2
1,838,503	-		RPSI07_RS06895	0.85	-0.8
1,838,503	-		RPSI07_RS06895	0.85	+1.1
1,838,530	+		RPSI07_RS06895	0.88	-0.3
1,838,530	+		RPSI07_RS06895	0.88	+1.9
1,838,530	+		RPSI07_RS06895	0.88	-0.1
1,838,530	+		RPSI07_RS06895	0.88	+2.2
1,838,530	+		RPSI07_RS06895	0.88	-0.2
1,838,530	+		RPSI07_RS06895	0.88	+0.3
1,838,531	-		RPSI07_RS06895	0.88	-0.4
1,838,531	-		RPSI07_RS06895	0.88	-1.3
1,838,531	-		RPSI07_RS06895	0.88	-0.8
1,838,531	-		RPSI07_RS06895	0.88	-0.3
1,838,531	-		RPSI07_RS06895	0.88	+0.9
1,838,567	+				-0.1
1,838,593	+				+3.1
1,838,593	+				-2.5
1,838,594	-				+2.1
1,838,594	-				-0.4
1,838,605	+				+1.5
1,838,605	+				-0.4
1,838,606	-				+0.1
1,838,606	-				+0.5
1,838,630	-				-1.1
1,838,630	-				+0.6
1,838,630	-				-1.2
1,838,656	+				+0.0
1,838,656	+				+0.2
1,838,656	+				+0.8
1,838,656	+				+1.2
1,838,656	+				+1.6
1,838,656	+				-1.7
1,838,656	+				+0.6
1,838,656	+				-1.2
1,838,656	+				-0.0
1,838,656	+				+0.3
1,838,656	+				-0.0
1,838,656	+				-0.6
1,838,656	+				-0.5
1,838,656	+				-1.0
1,838,657	-				-1.0
1,838,657	-				+0.7
1,838,657	-				-0.1
1,838,657	-				-2.6
1,838,657	-				-0.7
1,838,657	-				-1.2
1,838,657	-				-0.1
1,838,657	-				+1.4
1,838,657	-				-1.4
1,838,657	-				-0.8
1,838,657	-				+2.1
1,838,733	-				-0.2
1,838,733	-				-0.5
1,838,810	+				-2.3
1,838,810	+				+0.9
1,838,810	+				+0.1
1,838,810	+				-0.2
1,838,810	+				-1.0
1,838,810	+				+1.9
1,838,810	+				-0.8
1,838,811	-				+1.7
1,838,811	-				+2.5
1,838,811	-				-0.6
1,838,811	-				-0.1
1,838,814	+		RPSI07_RS06900	0.10	+0.0
1,838,814	+		RPSI07_RS06900	0.10	+0.3
1,838,814	+		RPSI07_RS06900	0.10	+0.2
1,838,814	+		RPSI07_RS06900	0.10	-0.5
1,838,815	-		RPSI07_RS06900	0.10	-1.7
1,838,815	-		RPSI07_RS06900	0.10	+0.1
1,838,825	+		RPSI07_RS06900	0.11	-0.6
1,838,825	+		RPSI07_RS06900	0.11	-0.1
1,838,825	+		RPSI07_RS06900	0.11	+0.9
1,838,825	+		RPSI07_RS06900	0.11	-0.4
1,838,825	+		RPSI07_RS06900	0.11	+3.1
1,838,825	+				+0.9
1,838,825	+		RPSI07_RS06900	0.11	-1.1
1,838,825	+		RPSI07_RS06900	0.11	+1.3
1,838,825	+		RPSI07_RS06900	0.11	+1.8
1,838,825	+		RPSI07_RS06900	0.11	+1.9
1,838,825	+		RPSI07_RS06900	0.11	+0.5
1,838,825	+		RPSI07_RS06900	0.11	+1.5
1,838,825	+		RPSI07_RS06900	0.11	+0.5
1,838,826	-		RPSI07_RS06900	0.11	+0.3
1,838,826	-		RPSI07_RS06900	0.11	+0.9
1,838,826	-		RPSI07_RS06900	0.11	-1.5
1,838,826	-		RPSI07_RS06900	0.11	+1.5
1,838,863	+		RPSI07_RS06900	0.16	+1.9
1,838,863	+		RPSI07_RS06900	0.16	-2.2
1,838,864	-		RPSI07_RS06900	0.16	+0.0
1,838,864	-		RPSI07_RS06900	0.16	+0.3
1,838,864	-		RPSI07_RS06900	0.16	-0.1
1,838,864	-		RPSI07_RS06900	0.16	-1.4
1,838,909	+		RPSI07_RS06900	0.21	-0.5
1,838,909	+		RPSI07_RS06900	0.21	+1.5
1,838,910	-		RPSI07_RS06900	0.22	-0.4
1,838,910	-		RPSI07_RS06900	0.22	-0.1
1,838,910	-		RPSI07_RS06900	0.22	+1.4
1,838,954	+				-2.3
1,838,954	+				+0.9
1,838,954	+		RPSI07_RS06900	0.27	+2.9
1,838,954	+		RPSI07_RS06900	0.27	-0.2
1,838,954	+		RPSI07_RS06900	0.27	-0.4
1,838,955	-		RPSI07_RS06900	0.27	+0.1
1,838,955	-		RPSI07_RS06900	0.27	-0.4
1,838,955	-		RPSI07_RS06900	0.27	-1.3
1,838,955	-		RPSI07_RS06900	0.27	-1.8
1,839,049	-		RPSI07_RS06900	0.38	+0.8
1,839,049	-		RPSI07_RS06900	0.38	-0.8
1,839,049	-		RPSI07_RS06900	0.38	+0.7
1,839,049	-		RPSI07_RS06900	0.38	+0.5
1,839,116	+		RPSI07_RS06900	0.46	+0.4
1,839,116	+		RPSI07_RS06900	0.46	-2.5
1,839,116	+		RPSI07_RS06900	0.46	+0.8
1,839,116	+		RPSI07_RS06900	0.46	+1.2
1,839,117	-		RPSI07_RS06900	0.46	+0.2
1,839,117	-		RPSI07_RS06900	0.46	-2.0
1,839,117	-		RPSI07_RS06900	0.46	-0.1
1,839,117	-		RPSI07_RS06900	0.46	+0.9
1,839,117	-		RPSI07_RS06900	0.46	-1.1
1,839,117	-		RPSI07_RS06900	0.46	-0.7
1,839,117	-		RPSI07_RS06900	0.46	-1.6
1,839,137	+		RPSI07_RS06900	0.49	-0.1
1,839,137	+		RPSI07_RS06900	0.49	+1.3
1,839,137	+		RPSI07_RS06900	0.49	-0.4
1,839,138	-		RPSI07_RS06900	0.49	-4.5
1,839,138	-		RPSI07_RS06900	0.49	-0.5
1,839,138	-		RPSI07_RS06900	0.49	-0.6
1,839,255	-		RPSI07_RS06900	0.63	-0.8
1,839,292	+		RPSI07_RS06900	0.68	-0.8
1,839,293	+		RPSI07_RS06900	0.68	-2.1
1,839,293	+		RPSI07_RS06900	0.68	-0.4
1,839,293	+		RPSI07_RS06900	0.68	+0.9
1,839,293	+		RPSI07_RS06900	0.68	+0.3
1,839,293	+		RPSI07_RS06900	0.68	+0.5
1,839,293	+		RPSI07_RS06900	0.68	-0.8
1,839,293	+		RPSI07_RS06900	0.68	+0.1
1,839,293	+		RPSI07_RS06900	0.68	-0.1
1,839,293	+		RPSI07_RS06900	0.68	+0.9
1,839,293	+		RPSI07_RS06900	0.68	+1.9
1,839,293	+		RPSI07_RS06900	0.68	-0.2
1,839,293	+		RPSI07_RS06900	0.68	-0.7
1,839,293	+		RPSI07_RS06900	0.68	-0.3
1,839,294	-		RPSI07_RS06900	0.68	+0.7
1,839,294	-		RPSI07_RS06900	0.68	+0.3
1,839,294	-		RPSI07_RS06900	0.68	+0.6
1,839,294	-		RPSI07_RS06900	0.68	-1.7
1,839,294	-		RPSI07_RS06900	0.68	+0.8
1,839,294	-		RPSI07_RS06900	0.68	-0.9
1,839,294	-		RPSI07_RS06900	0.68	-0.6
1,839,294	-		RPSI07_RS06900	0.68	+1.0
1,839,294	-		RPSI07_RS06900	0.68	-0.4
1,839,294	-		RPSI07_RS06900	0.68	+0.5
1,839,294	-		RPSI07_RS06900	0.68	-1.3
1,839,316	+		RPSI07_RS06900	0.70	+3.1
1,839,355	-		RPSI07_RS06900	0.75	+5.1
1,839,406	+		RPSI07_RS06900	0.81	+0.5
1,839,406	+		RPSI07_RS06900	0.81	+0.3
1,839,406	+		RPSI07_RS06900	0.81	-1.1
1,839,406	+		RPSI07_RS06900	0.81	-1.0
1,839,407	-		RPSI07_RS06900	0.81	+0.2
1,839,407	-		RPSI07_RS06900	0.81	-0.5
1,839,407	-		RPSI07_RS06900	0.81	-0.1
1,839,407	-		RPSI07_RS06900	0.81	-1.0
1,839,407	-		RPSI07_RS06900	0.81	+1.5
1,839,407	-		RPSI07_RS06900	0.81	+0.6
1,839,407	-		RPSI07_RS06900	0.81	-0.1
1,839,442	+		RPSI07_RS06900	0.86	-0.7
1,839,442	+		RPSI07_RS06900	0.86	-1.9
1,839,443	-		RPSI07_RS06900	0.86	-0.5
1,839,443	-		RPSI07_RS06900	0.86	-0.0
1,839,443	-		RPSI07_RS06900	0.86	-0.2
1,839,443	-		RPSI07_RS06900	0.86	-0.1
1,839,461	+		RPSI07_RS06900	0.88	-0.9
1,839,461	+		RPSI07_RS06900	0.88	+1.2
1,839,461	+		RPSI07_RS06900	0.88	-0.2
1,839,461	+		RPSI07_RS06900	0.88	-0.9
1,839,462	-		RPSI07_RS06900	0.88	-4.7
1,839,462	-		RPSI07_RS06900	0.88	-1.7
1,839,462	-		RPSI07_RS06900	0.88	-0.4
1,839,528	+				-1.9
1,839,529	-				+0.7
1,839,573	+				-0.7
1,839,573	+				+2.5
1,839,573	+				+1.1
1,839,574	-				+1.1
1,839,574	-				+0.9
1,839,577	+				-0.3
1,839,577	+				+0.3
1,839,577	+				-1.1
1,839,577	+				+0.3
1,839,577	+				-2.3
1,839,577	+				-0.1
1,839,578	-				+0.2
1,839,578	-				-2.2
1,839,578	-				-2.0
1,839,578	-				+0.9
1,839,648	+				-1.3
1,839,649	-				-1.1
1,839,649	-				+1.2