Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS01385

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS01375 and RPSI07_RS01380 are separated by 115 nucleotidesRPSI07_RS01380 and RPSI07_RS01385 are separated by 102 nucleotidesRPSI07_RS01385 and RPSI07_RS01390 are separated by 413 nucleotides RPSI07_RS01375: RPSI07_RS01375 - flagellar protein FlgN, at 377,749 to 378,210 _RS01375 RPSI07_RS01380: RPSI07_RS01380 - flagellar biosynthesis anti-sigma factor FlgM, at 378,326 to 378,646 _RS01380 RPSI07_RS01385: RPSI07_RS01385 - flagella basal body P-ring formation protein FlgA, at 378,749 to 379,630 _RS01385 RPSI07_RS01390: RPSI07_RS01390 - flagellar basal body rod protein FlgB, at 380,044 to 380,505 _RS01390 Position (kb) 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 377.750 kb on + strandat 377.750 kb on + strandat 377.750 kb on + strandat 377.808 kb on - strand, within RPSI07_RS01375at 377.808 kb on - strand, within RPSI07_RS01375at 377.978 kb on + strand, within RPSI07_RS01375at 377.978 kb on + strand, within RPSI07_RS01375at 377.978 kb on + strand, within RPSI07_RS01375at 377.979 kb on - strand, within RPSI07_RS01375at 377.979 kb on - strand, within RPSI07_RS01375at 377.992 kb on + strand, within RPSI07_RS01375at 377.993 kb on + strand, within RPSI07_RS01375at 377.993 kb on + strand, within RPSI07_RS01375at 378.009 kb on + strand, within RPSI07_RS01375at 378.010 kb on - strand, within RPSI07_RS01375at 378.186 kb on + strandat 378.291 kb on - strandat 378.291 kb on - strandat 378.291 kb on - strandat 378.674 kb on + strandat 378.674 kb on + strandat 378.674 kb on + strandat 378.674 kb on + strandat 378.674 kb on + strandat 378.674 kb on + strandat 378.675 kb on - strandat 378.675 kb on - strandat 378.675 kb on - strandat 378.683 kb on + strandat 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.116 kb on + strand, within RPSI07_RS01385at 379.117 kb on - strand, within RPSI07_RS01385at 379.117 kb on - strand, within RPSI07_RS01385at 379.117 kb on - strand, within RPSI07_RS01385at 379.117 kb on - strand, within RPSI07_RS01385at 379.117 kb on - strand, within RPSI07_RS01385at 379.117 kb on - strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.119 kb on + strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.120 kb on - strand, within RPSI07_RS01385at 379.196 kb on + strand, within RPSI07_RS01385at 379.196 kb on + strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.197 kb on - strand, within RPSI07_RS01385at 379.663 kb on + strandat 379.664 kb on - strandat 379.703 kb on + strandat 379.716 kb on - strandat 379.716 kb on - strandat 379.716 kb on - strandat 379.748 kb on - strandat 379.748 kb on - strandat 379.909 kb on - strandat 379.916 kb on + strandat 379.916 kb on + strandat 379.916 kb on + strandat 379.916 kb on + strandat 379.917 kb on - strandat 379.997 kb on - strandat 380.155 kb on + strand, within RPSI07_RS01390at 380.155 kb on + strand, within RPSI07_RS01390at 380.155 kb on + strand, within RPSI07_RS01390at 380.155 kb on + strand, within RPSI07_RS01390at 380.156 kb on - strand, within RPSI07_RS01390at 380.156 kb on - strand, within RPSI07_RS01390at 380.156 kb on - strand, within RPSI07_RS01390at 380.156 kb on - strand, within RPSI07_RS01390at 380.285 kb on + strand, within RPSI07_RS01390at 380.285 kb on + strand, within RPSI07_RS01390at 380.285 kb on + strand, within RPSI07_RS01390at 380.286 kb on - strand, within RPSI07_RS01390at 380.503 kb on + strandat 380.504 kb on - strandat 380.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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377,750 + -0.1
377,750 + +0.4
377,750 + +0.9
377,808 - RPSI07_RS01375 0.13 +0.3
377,808 - RPSI07_RS01375 0.13 +0.0
377,978 + RPSI07_RS01375 0.50 +3.7
377,978 + RPSI07_RS01375 0.50 +0.7
377,978 + RPSI07_RS01375 0.50 +0.6
377,979 - RPSI07_RS01375 0.50 +0.6
377,979 - RPSI07_RS01375 0.50 +0.5
377,992 + RPSI07_RS01375 0.53 +2.5
377,993 + RPSI07_RS01375 0.53 +0.7
377,993 + RPSI07_RS01375 0.53 -0.4
378,009 + RPSI07_RS01375 0.56 -0.6
378,010 - RPSI07_RS01375 0.56 +0.4
378,186 + +0.1
378,291 - +2.2
378,291 - +0.4
378,291 - -0.9
378,674 + +1.7
378,674 + +0.5
378,674 + -2.8
378,674 + +0.1
378,674 + +0.5
378,674 + -0.8
378,675 - +1.9
378,675 - -0.3
378,675 - -1.6
378,683 + -0.2
379,116 + RPSI07_RS01385 0.42 +0.7
379,116 + RPSI07_RS01385 0.42 -0.8
379,116 + RPSI07_RS01385 0.42 -0.5
379,116 + RPSI07_RS01385 0.42 -0.3
379,116 + RPSI07_RS01385 0.42 -0.4
379,116 + RPSI07_RS01385 0.42 -0.2
379,116 + RPSI07_RS01385 0.42 +1.4
379,116 + RPSI07_RS01385 0.42 -0.4
379,116 + RPSI07_RS01385 0.42 +0.2
379,116 + RPSI07_RS01385 0.42 -0.6
379,117 - RPSI07_RS01385 0.42 +1.3
379,117 - RPSI07_RS01385 0.42 +0.4
379,117 - RPSI07_RS01385 0.42 -0.6
379,117 - RPSI07_RS01385 0.42 -0.1
379,117 - RPSI07_RS01385 0.42 +0.9
379,117 - RPSI07_RS01385 0.42 -0.5
379,119 + RPSI07_RS01385 0.42 -0.6
379,119 + RPSI07_RS01385 0.42 -0.3
379,119 + RPSI07_RS01385 0.42 +1.9
379,119 + RPSI07_RS01385 0.42 +0.4
379,119 + RPSI07_RS01385 0.42 -2.8
379,119 + RPSI07_RS01385 0.42 +0.9
379,119 + RPSI07_RS01385 0.42 -1.1
379,120 - RPSI07_RS01385 0.42 -0.7
379,120 - RPSI07_RS01385 0.42 +1.9
379,120 - RPSI07_RS01385 0.42 -2.4
379,120 - RPSI07_RS01385 0.42 -0.7
379,120 - RPSI07_RS01385 0.42 -1.1
379,120 - RPSI07_RS01385 0.42 -0.3
379,120 - RPSI07_RS01385 0.42 +0.2
379,120 - RPSI07_RS01385 0.42 +0.5
379,196 + RPSI07_RS01385 0.51 +1.7
379,196 + RPSI07_RS01385 0.51 +0.4
379,197 - RPSI07_RS01385 0.51 -0.8
379,197 - RPSI07_RS01385 0.51 -1.6
379,197 - RPSI07_RS01385 0.51 -1.6
379,197 - RPSI07_RS01385 0.51 -0.1
379,197 - RPSI07_RS01385 0.51 -1.1
379,197 - RPSI07_RS01385 0.51 +0.9
379,197 - RPSI07_RS01385 0.51 +0.1
379,663 + -0.8
379,664 - -1.4
379,703 + +0.3
379,716 - +0.4
379,716 - -0.3
379,716 - +1.9
379,748 - +1.3
379,748 - +1.7
379,909 - +0.4
379,916 + +0.1
379,916 + +1.9
379,916 + +0.1
379,916 + -0.4
379,917 - +1.6
379,997 - +1.7
380,155 + RPSI07_RS01390 0.24 +0.4
380,155 + RPSI07_RS01390 0.24 -0.9
380,155 + RPSI07_RS01390 0.24 +0.8
380,155 + RPSI07_RS01390 0.24 +0.3
380,156 - RPSI07_RS01390 0.24 +0.6
380,156 - RPSI07_RS01390 0.24 +1.1
380,156 - RPSI07_RS01390 0.24 -2.5
380,156 - RPSI07_RS01390 0.24 -0.1
380,285 + RPSI07_RS01390 0.52 -0.4
380,285 + RPSI07_RS01390 0.52 -1.1
380,285 + RPSI07_RS01390 0.52 -1.1
380,286 - RPSI07_RS01390 0.52 +0.0
380,503 + +0.1
380,504 - -0.1
380,533 - -0.1

Or see this region's nucleotide sequence