Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS00975

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS00970 and RPSI07_RS00975 are separated by 278 nucleotidesRPSI07_RS00975 and RPSI07_RS00980 are separated by 24 nucleotides RPSI07_RS00970: RPSI07_RS00970 - PAS domain S-box protein, at 264,880 to 267,330 _RS00970 RPSI07_RS00975: RPSI07_RS00975 - sensor domain-containing diguanylate cyclase, at 267,609 to 271,145 _RS00975 RPSI07_RS00980: RPSI07_RS00980 - PAS domain S-box protein, at 271,170 to 272,759 _RS00980 Position (kb) 267 268 269 270 271 272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 266.688 kb on + strand, within RPSI07_RS00970at 266.688 kb on + strand, within RPSI07_RS00970at 266.690 kb on + strand, within RPSI07_RS00970at 266.690 kb on + strand, within RPSI07_RS00970at 266.690 kb on + strand, within RPSI07_RS00970at 266.690 kb on + strand, within RPSI07_RS00970at 266.690 kb on + strand, within RPSI07_RS00970at 266.691 kb on - strand, within RPSI07_RS00970at 266.691 kb on - strand, within RPSI07_RS00970at 266.691 kb on - strand, within RPSI07_RS00970at 266.691 kb on - strand, within RPSI07_RS00970at 266.691 kb on - strand, within RPSI07_RS00970at 266.691 kb on - strand, within RPSI07_RS00970at 266.889 kb on + strand, within RPSI07_RS00970at 266.889 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.891 kb on + strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.892 kb on - strand, within RPSI07_RS00970at 266.983 kb on + strand, within RPSI07_RS00970at 266.983 kb on + strand, within RPSI07_RS00970at 266.984 kb on - strand, within RPSI07_RS00970at 266.984 kb on - strand, within RPSI07_RS00970at 266.984 kb on - strand, within RPSI07_RS00970at 267.201 kb on + strandat 267.201 kb on + strandat 267.202 kb on - strandat 267.209 kb on + strandat 267.209 kb on + strandat 267.209 kb on + strandat 267.209 kb on + strandat 267.209 kb on + strandat 267.209 kb on + strandat 267.210 kb on - strandat 267.210 kb on - strandat 267.210 kb on - strandat 267.210 kb on - strandat 267.210 kb on - strandat 267.343 kb on + strandat 267.343 kb on + strandat 267.344 kb on - strandat 267.344 kb on - strandat 267.412 kb on + strandat 267.412 kb on + strandat 267.413 kb on - strandat 267.413 kb on - strandat 267.558 kb on - strandat 267.558 kb on - strandat 267.717 kb on + strandat 267.759 kb on + strandat 267.779 kb on + strandat 268.197 kb on + strand, within RPSI07_RS00975at 268.197 kb on + strand, within RPSI07_RS00975at 268.268 kb on + strand, within RPSI07_RS00975at 268.269 kb on - strand, within RPSI07_RS00975at 268.269 kb on - strand, within RPSI07_RS00975at 268.354 kb on - strand, within RPSI07_RS00975at 268.424 kb on + strand, within RPSI07_RS00975at 268.570 kb on - strand, within RPSI07_RS00975at 269.013 kb on + strand, within RPSI07_RS00975at 269.013 kb on + strand, within RPSI07_RS00975at 269.014 kb on - strand, within RPSI07_RS00975at 269.014 kb on - strand, within RPSI07_RS00975at 269.014 kb on - strand, within RPSI07_RS00975at 269.168 kb on - strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.199 kb on + strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.200 kb on - strand, within RPSI07_RS00975at 269.202 kb on - strand, within RPSI07_RS00975at 269.274 kb on + strand, within RPSI07_RS00975at 269.274 kb on + strand, within RPSI07_RS00975at 269.274 kb on + strand, within RPSI07_RS00975at 269.274 kb on + strand, within RPSI07_RS00975at 269.275 kb on - strand, within RPSI07_RS00975at 269.275 kb on - strand, within RPSI07_RS00975at 269.374 kb on + strand, within RPSI07_RS00975at 269.374 kb on + strand, within RPSI07_RS00975at 269.375 kb on - strand, within RPSI07_RS00975at 269.375 kb on - strand, within RPSI07_RS00975at 269.560 kb on - strand, within RPSI07_RS00975at 269.560 kb on - strand, within RPSI07_RS00975at 269.560 kb on - strand, within RPSI07_RS00975at 269.799 kb on + strand, within RPSI07_RS00975at 269.799 kb on + strand, within RPSI07_RS00975at 269.799 kb on + strand, within RPSI07_RS00975at 269.799 kb on + strand, within RPSI07_RS00975at 269.800 kb on - strand, within RPSI07_RS00975at 269.800 kb on - strand, within RPSI07_RS00975at 269.800 kb on - strand, within RPSI07_RS00975at 269.800 kb on - strand, within RPSI07_RS00975at 269.800 kb on - strand, within RPSI07_RS00975at 269.800 kb on - strand, within RPSI07_RS00975at 269.961 kb on + strand, within RPSI07_RS00975at 269.961 kb on + strand, within RPSI07_RS00975at 269.961 kb on + strand, within RPSI07_RS00975at 269.961 kb on + strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 269.962 kb on - strand, within RPSI07_RS00975at 270.084 kb on - strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.294 kb on + strand, within RPSI07_RS00975at 270.294 kb on + strand, within RPSI07_RS00975at 270.295 kb on - strand, within RPSI07_RS00975at 270.348 kb on - strand, within RPSI07_RS00975at 270.361 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.652 kb on + strand, within RPSI07_RS00975at 270.853 kb on - strandat 270.853 kb on - strandat 270.867 kb on + strandat 270.867 kb on + strandat 270.868 kb on - strandat 271.071 kb on + strandat 271.071 kb on + strandat 271.072 kb on - strandat 271.072 kb on - strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.143 kb on + strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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266,688 + RPSI07_RS00970 0.74 +1.4
266,688 + RPSI07_RS00970 0.74 -1.8
266,690 + RPSI07_RS00970 0.74 +1.2
266,690 + RPSI07_RS00970 0.74 +2.6
266,690 + RPSI07_RS00970 0.74 +0.8
266,690 + RPSI07_RS00970 0.74 -1.4
266,690 + RPSI07_RS00970 0.74 +0.1
266,691 - RPSI07_RS00970 0.74 +1.0
266,691 - RPSI07_RS00970 0.74 -0.8
266,691 - RPSI07_RS00970 0.74 -1.2
266,691 - RPSI07_RS00970 0.74 -0.4
266,691 - RPSI07_RS00970 0.74 +0.7
266,691 - RPSI07_RS00970 0.74 -3.3
266,889 + RPSI07_RS00970 0.82 -1.0
266,889 + RPSI07_RS00970 0.82 -2.8
266,891 + RPSI07_RS00970 0.82 +0.8
266,891 + RPSI07_RS00970 0.82 -0.8
266,891 + RPSI07_RS00970 0.82 -0.3
266,891 + RPSI07_RS00970 0.82 -1.4
266,891 + RPSI07_RS00970 0.82 +0.5
266,891 + RPSI07_RS00970 0.82 +0.3
266,891 + RPSI07_RS00970 0.82 +0.7
266,891 + RPSI07_RS00970 0.82 +0.7
266,891 + RPSI07_RS00970 0.82 +0.7
266,892 - RPSI07_RS00970 0.82 -1.3
266,892 - RPSI07_RS00970 0.82 +0.4
266,892 - RPSI07_RS00970 0.82 -1.7
266,892 - RPSI07_RS00970 0.82 +0.8
266,892 - RPSI07_RS00970 0.82 +1.8
266,892 - RPSI07_RS00970 0.82 -0.2
266,892 - RPSI07_RS00970 0.82 -0.4
266,983 + RPSI07_RS00970 0.86 +0.5
266,983 + RPSI07_RS00970 0.86 +0.1
266,984 - RPSI07_RS00970 0.86 +3.3
266,984 - RPSI07_RS00970 0.86 -1.9
266,984 - RPSI07_RS00970 0.86 -0.8
267,201 + -0.3
267,201 + +1.7
267,202 - +0.3
267,209 + -0.0
267,209 + +0.4
267,209 + +0.5
267,209 + -2.1
267,209 + +3.0
267,209 + +0.2
267,210 - +1.2
267,210 - -1.2
267,210 - +0.3
267,210 - -0.5
267,210 - +1.8
267,343 + -0.0
267,343 + +3.8
267,344 - +2.0
267,344 - +1.0
267,412 + +0.7
267,412 + +2.3
267,413 - -1.3
267,413 - -1.8
267,558 - -1.8
267,558 - +2.2
267,717 + -3.8
267,759 + -1.7
267,779 + +0.3
268,197 + RPSI07_RS00975 0.17 -2.2
268,197 + RPSI07_RS00975 0.17 -1.8
268,268 + RPSI07_RS00975 0.19 -1.1
268,269 - RPSI07_RS00975 0.19 +0.4
268,269 - RPSI07_RS00975 0.19 +1.0
268,354 - RPSI07_RS00975 0.21 -1.2
268,424 + RPSI07_RS00975 0.23 +0.2
268,570 - RPSI07_RS00975 0.27 -3.1
269,013 + RPSI07_RS00975 0.40 -2.9
269,013 + RPSI07_RS00975 0.40 -3.9
269,014 - RPSI07_RS00975 0.40 -2.6
269,014 - RPSI07_RS00975 0.40 +0.1
269,014 - RPSI07_RS00975 0.40 +1.1
269,168 - RPSI07_RS00975 0.44 +0.1
269,199 + RPSI07_RS00975 0.45 -1.0
269,199 + RPSI07_RS00975 0.45 -1.9
269,199 + RPSI07_RS00975 0.45 -1.9
269,199 + RPSI07_RS00975 0.45 -1.0
269,199 + RPSI07_RS00975 0.45 -0.4
269,199 + RPSI07_RS00975 0.45 +3.3
269,199 + RPSI07_RS00975 0.45 -1.8
269,199 + RPSI07_RS00975 0.45 -1.4
269,199 + RPSI07_RS00975 0.45 -0.6
269,199 + RPSI07_RS00975 0.45 -1.7
269,199 + RPSI07_RS00975 0.45 +1.5
269,199 + RPSI07_RS00975 0.45 -3.5
269,199 + RPSI07_RS00975 0.45 -2.1
269,199 + RPSI07_RS00975 0.45 -2.6
269,199 + RPSI07_RS00975 0.45 -0.7
269,199 + RPSI07_RS00975 0.45 -1.5
269,199 + RPSI07_RS00975 0.45 -0.8
269,199 + RPSI07_RS00975 0.45 -1.2
269,199 + RPSI07_RS00975 0.45 -1.1
269,199 + RPSI07_RS00975 0.45 +0.6
269,199 + RPSI07_RS00975 0.45 -1.1
269,199 + RPSI07_RS00975 0.45 -3.2
269,199 + RPSI07_RS00975 0.45 -2.1
269,199 + RPSI07_RS00975 0.45 -3.6
269,199 + RPSI07_RS00975 0.45 -1.3
269,199 + RPSI07_RS00975 0.45 -1.2
269,200 - RPSI07_RS00975 0.45 -0.7
269,200 - RPSI07_RS00975 0.45 +1.0
269,200 - RPSI07_RS00975 0.45 +0.1
269,200 - RPSI07_RS00975 0.45 +2.5
269,200 - RPSI07_RS00975 0.45 -0.7
269,200 - RPSI07_RS00975 0.45 -1.3
269,200 - RPSI07_RS00975 0.45 +3.3
269,200 - RPSI07_RS00975 0.45 +0.6
269,200 - RPSI07_RS00975 0.45 -1.7
269,200 - RPSI07_RS00975 0.45 -1.3
269,200 - RPSI07_RS00975 0.45 -1.7
269,200 - RPSI07_RS00975 0.45 +0.4
269,200 - RPSI07_RS00975 0.45 +0.6
269,200 - RPSI07_RS00975 0.45 -0.7
269,200 - RPSI07_RS00975 0.45 -0.3
269,200 - RPSI07_RS00975 0.45 +1.0
269,200 - RPSI07_RS00975 0.45 -1.4
269,200 - RPSI07_RS00975 0.45 -0.0
269,200 - RPSI07_RS00975 0.45 -2.2
269,202 - RPSI07_RS00975 0.45 +1.0
269,274 + RPSI07_RS00975 0.47 -3.0
269,274 + RPSI07_RS00975 0.47 -1.4
269,274 + RPSI07_RS00975 0.47 +0.5
269,274 + RPSI07_RS00975 0.47 -1.6
269,275 - RPSI07_RS00975 0.47 -0.9
269,275 - RPSI07_RS00975 0.47 -1.2
269,374 + RPSI07_RS00975 0.50 -0.9
269,374 + RPSI07_RS00975 0.50 -0.7
269,375 - RPSI07_RS00975 0.50 +3.0
269,375 - RPSI07_RS00975 0.50 -0.0
269,560 - RPSI07_RS00975 0.55 -1.5
269,560 - RPSI07_RS00975 0.55 +1.0
269,560 - RPSI07_RS00975 0.55 +2.0
269,799 + RPSI07_RS00975 0.62 -1.0
269,799 + RPSI07_RS00975 0.62 -0.5
269,799 + RPSI07_RS00975 0.62 -1.4
269,799 + RPSI07_RS00975 0.62 -2.0
269,800 - RPSI07_RS00975 0.62 -0.0
269,800 - RPSI07_RS00975 0.62 -0.6
269,800 - RPSI07_RS00975 0.62 -1.8
269,800 - RPSI07_RS00975 0.62 -1.3
269,800 - RPSI07_RS00975 0.62 -0.6
269,800 - RPSI07_RS00975 0.62 -0.9
269,961 + RPSI07_RS00975 0.66 -1.4
269,961 + RPSI07_RS00975 0.66 -1.0
269,961 + RPSI07_RS00975 0.66 +1.0
269,961 + RPSI07_RS00975 0.66 -2.6
269,962 - RPSI07_RS00975 0.67 -2.6
269,962 - RPSI07_RS00975 0.67 -0.9
269,962 - RPSI07_RS00975 0.67 -1.5
269,962 - RPSI07_RS00975 0.67 +0.2
269,962 - RPSI07_RS00975 0.67 -0.0
269,962 - RPSI07_RS00975 0.67 -0.9
269,962 - RPSI07_RS00975 0.67 -0.6
270,084 - RPSI07_RS00975 0.70 -3.0
270,291 + RPSI07_RS00975 0.76 -1.3
270,291 + RPSI07_RS00975 0.76 +0.4
270,291 + RPSI07_RS00975 0.76 -1.4
270,291 + RPSI07_RS00975 0.76 +1.1
270,291 + RPSI07_RS00975 0.76 +0.8
270,291 + RPSI07_RS00975 0.76 +2.6
270,291 + RPSI07_RS00975 0.76 +1.0
270,291 + RPSI07_RS00975 0.76 +2.3
270,291 + RPSI07_RS00975 0.76 +0.6
270,291 + RPSI07_RS00975 0.76 -1.3
270,291 + RPSI07_RS00975 0.76 +1.4
270,291 + RPSI07_RS00975 0.76 +0.7
270,292 - RPSI07_RS00975 0.76 +0.7
270,292 - RPSI07_RS00975 0.76 -3.4
270,292 - RPSI07_RS00975 0.76 -0.0
270,292 - RPSI07_RS00975 0.76 +0.2
270,292 - RPSI07_RS00975 0.76 +1.2
270,292 - RPSI07_RS00975 0.76 -0.1
270,292 - RPSI07_RS00975 0.76 -2.1
270,294 + RPSI07_RS00975 0.76 -1.6
270,294 + RPSI07_RS00975 0.76 +2.6
270,295 - RPSI07_RS00975 0.76 -2.2
270,348 - RPSI07_RS00975 0.77 -2.5
270,361 - RPSI07_RS00975 0.78 +0.1
270,424 - RPSI07_RS00975 0.80 +1.0
270,424 - RPSI07_RS00975 0.80 -1.2
270,424 - RPSI07_RS00975 0.80 +0.5
270,424 - RPSI07_RS00975 0.80 -2.2
270,424 - RPSI07_RS00975 0.80 +0.1
270,652 + RPSI07_RS00975 0.86 -0.9
270,853 - -1.6
270,853 - -0.8
270,867 + -3.3
270,867 + -1.8
270,868 - -0.0
271,071 + -1.2
271,071 + +1.3
271,072 - -0.6
271,072 - -0.9
271,074 + +2.6
271,074 + +1.0
271,074 + -2.6
271,074 + +0.1
271,074 + +1.0
271,074 + +1.9
271,074 + -2.3
271,074 + -3.2
271,074 + -1.0
271,075 - -1.4
271,075 - -1.0
271,075 - -3.0
271,075 - -0.0
271,075 - -1.1
271,075 - -0.3
271,075 - -1.9
271,075 - -0.7
271,143 + -1.0
271,144 - -1.3
271,144 - -0.7
271,144 - +1.3
271,144 - +0.1
271,144 - +0.0
271,144 - -0.3

Or see this region's nucleotide sequence