Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06905

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
1,839,116	+		RPSI07_RS06900	0.46	+0.8
1,839,116	+		RPSI07_RS06900	0.46	-1.1
1,839,116	+		RPSI07_RS06900	0.46	+0.8
1,839,116	+		RPSI07_RS06900	0.46	+0.4
1,839,117	-		RPSI07_RS06900	0.46	+0.6
1,839,117	-		RPSI07_RS06900	0.46	-2.0
1,839,117	-		RPSI07_RS06900	0.46	+0.2
1,839,117	-		RPSI07_RS06900	0.46	+1.9
1,839,117	-		RPSI07_RS06900	0.46	+0.9
1,839,117	-		RPSI07_RS06900	0.46	-0.1
1,839,117	-		RPSI07_RS06900	0.46	-1.3
1,839,137	+		RPSI07_RS06900	0.49	-0.4
1,839,137	+		RPSI07_RS06900	0.49	+0.9
1,839,137	+		RPSI07_RS06900	0.49	-1.4
1,839,138	-		RPSI07_RS06900	0.49	-4.5
1,839,138	-		RPSI07_RS06900	0.49	+0.7
1,839,138	-		RPSI07_RS06900	0.49	-1.1
1,839,255	-		RPSI07_RS06900	0.63	+0.2
1,839,292	+		RPSI07_RS06900	0.68	-0.3
1,839,293	+		RPSI07_RS06900	0.68	-1.7
1,839,293	+		RPSI07_RS06900	0.68	+0.1
1,839,293	+		RPSI07_RS06900	0.68	+0.5
1,839,293	+		RPSI07_RS06900	0.68	-1.1
1,839,293	+		RPSI07_RS06900	0.68	-0.4
1,839,293	+		RPSI07_RS06900	0.68	-1.2
1,839,293	+		RPSI07_RS06900	0.68	+0.6
1,839,293	+		RPSI07_RS06900	0.68	-0.1
1,839,293	+		RPSI07_RS06900	0.68	+0.9
1,839,293	+		RPSI07_RS06900	0.68	+2.5
1,839,293	+		RPSI07_RS06900	0.68	+0.6
1,839,293	+		RPSI07_RS06900	0.68	-1.0
1,839,293	+		RPSI07_RS06900	0.68	+0.3
1,839,294	-		RPSI07_RS06900	0.68	+0.3
1,839,294	-		RPSI07_RS06900	0.68	+0.9
1,839,294	-		RPSI07_RS06900	0.68	+0.7
1,839,294	-		RPSI07_RS06900	0.68	-0.1
1,839,294	-		RPSI07_RS06900	0.68	+1.2
1,839,294	-		RPSI07_RS06900	0.68	-0.4
1,839,294	-		RPSI07_RS06900	0.68	-0.7
1,839,294	-		RPSI07_RS06900	0.68	+1.7
1,839,294	-		RPSI07_RS06900	0.68	+0.9
1,839,294	-		RPSI07_RS06900	0.68	+0.9
1,839,294	-		RPSI07_RS06900	0.68	-0.7
1,839,316	+		RPSI07_RS06900	0.70	+4.0
1,839,355	-		RPSI07_RS06900	0.75	+4.1
1,839,406	+		RPSI07_RS06900	0.81	+0.5
1,839,406	+		RPSI07_RS06900	0.81	-1.2
1,839,406	+		RPSI07_RS06900	0.81	-2.3
1,839,406	+		RPSI07_RS06900	0.81	-1.0
1,839,407	-		RPSI07_RS06900	0.81	+0.7
1,839,407	-		RPSI07_RS06900	0.81	-0.6
1,839,407	-		RPSI07_RS06900	0.81	+0.9
1,839,407	-		RPSI07_RS06900	0.81	-0.5
1,839,407	-		RPSI07_RS06900	0.81	-0.5
1,839,407	-		RPSI07_RS06900	0.81	-0.0
1,839,407	-		RPSI07_RS06900	0.81	-0.5
1,839,442	+		RPSI07_RS06900	0.86	-0.7
1,839,442	+		RPSI07_RS06900	0.86	-1.1
1,839,443	-		RPSI07_RS06900	0.86	-0.1
1,839,443	-		RPSI07_RS06900	0.86	+0.4
1,839,443	-		RPSI07_RS06900	0.86	+0.1
1,839,443	-		RPSI07_RS06900	0.86	-0.3
1,839,461	+		RPSI07_RS06900	0.88	-1.0
1,839,461	+		RPSI07_RS06900	0.88	+1.2
1,839,461	+		RPSI07_RS06900	0.88	-2.5
1,839,461	+		RPSI07_RS06900	0.88	-1.3
1,839,462	-		RPSI07_RS06900	0.88	-3.1
1,839,462	-		RPSI07_RS06900	0.88	-1.7
1,839,462	-		RPSI07_RS06900	0.88	-0.0
1,839,528	+				-0.9
1,839,529	-				-0.2
1,839,573	+				-0.1
1,839,573	+				+1.7
1,839,573	+				+0.9
1,839,574	-				+1.4
1,839,574	-				+0.9
1,839,577	+				-0.1
1,839,577	+				-0.7
1,839,577	+				-0.5
1,839,577	+				+0.3
1,839,577	+				-3.8
1,839,577	+				-0.1
1,839,578	-				+0.6
1,839,578	-				-2.7
1,839,578	-				-1.0
1,839,578	-				+1.2
1,839,648	+				-0.5
1,839,649	-				-1.1
1,839,649	-				+1.1
1,839,661	+				+0.1
1,839,662	+				-0.2
1,839,662	+				+1.5
1,839,662	+				+0.3
1,839,662	+				+3.8
1,839,662	+				+2.3
1,839,662	+				-0.8
1,839,663	-				-0.1
1,839,663	-				+0.4
1,839,663	-				-0.2
1,839,663	-				-0.1
1,839,663	-				+0.1
1,839,663	-				-0.1
1,839,663	-				+0.4
1,839,663	-				+0.3
1,839,699	+				-0.1
1,839,699	+				+3.2
1,839,699	+				+0.5
1,839,699	+				-0.0
1,839,699	+				-1.0
1,839,699	+				+0.5
1,839,699	+				-0.9
1,839,699	+				-0.2
1,839,699	+				-0.9
1,839,700	-				+0.8
1,839,700	-				-0.1
1,839,700	-				-0.2
1,839,700	-				+0.7
1,839,700	-				+0.3
1,839,700	-				-1.4
1,839,700	-				-0.0
1,839,702	+				+0.9
1,839,702	+				+0.3
1,839,703	-				+0.2
1,839,703	-				-1.3
1,839,703	-				-0.5
1,839,804	+		RPSI07_RS24680	0.30	-0.4
1,839,804	+		RPSI07_RS24680	0.30	-1.7
1,839,804	+		RPSI07_RS24680	0.30	-0.5
1,839,804	+		RPSI07_RS24680	0.30	-0.4
1,839,805	-		RPSI07_RS24680	0.31	-1.3
1,839,805	-		RPSI07_RS24680	0.31	-0.4
1,839,805	-		RPSI07_RS24680	0.31	+0.9
1,839,805	-		RPSI07_RS24680	0.31	-0.8
1,839,805	-		RPSI07_RS24680	0.31	+1.0
1,839,805	-		RPSI07_RS24680	0.31	+0.7
1,839,805	-		RPSI07_RS24680	0.31	-0.6
1,839,896	+		RPSI07_RS24680	0.78	+1.9
1,839,896	+		RPSI07_RS24680	0.78	-0.8
1,839,896	+		RPSI07_RS24680	0.78	+0.6
1,839,896	+		RPSI07_RS24680	0.78	+0.5
1,839,896	+		RPSI07_RS24680	0.78	+2.1
1,839,896	+		RPSI07_RS24680	0.78	+1.5
1,839,896	+		RPSI07_RS24680	0.78	-0.3
1,839,896	+		RPSI07_RS24680	0.78	+2.2
1,839,897	-		RPSI07_RS24680	0.79	-0.7
1,839,897	-		RPSI07_RS24680	0.79	-0.3
1,839,897	-		RPSI07_RS24680	0.79	+0.3
1,839,897	-		RPSI07_RS24680	0.79	+0.2
1,839,897	-		RPSI07_RS24680	0.79	-0.9
1,839,897	-		RPSI07_RS24680	0.79	-0.1
1,839,903	+		RPSI07_RS24680	0.82	+1.7
1,839,904	-		RPSI07_RS24680	0.82	+0.0
1,839,911	+		RPSI07_RS24680	0.86	-0.6
1,839,933	+				-0.1
1,839,933	+				-0.4
1,839,933	+				-0.3
1,839,933	+				-1.2
1,839,933	+				-1.0
1,839,933	+				+2.5
1,839,934	-				-0.7
1,839,934	-				-0.3
1,839,934	-				-2.0
1,839,999	+				+0.7
1,840,027	-				+1.0
1,840,074	+				+2.5
1,840,075	-				-1.0
1,840,134	+		RPSI07_RS06905	0.15	+0.9
1,840,134	+		RPSI07_RS06905	0.15	+0.1
1,840,137	+		RPSI07_RS06905	0.16	-2.9
1,840,137	+		RPSI07_RS06905	0.16	+1.9
1,840,137	+		RPSI07_RS06905	0.16	+1.9
1,840,137	+		RPSI07_RS06905	0.16	-0.3
1,840,138	-		RPSI07_RS06905	0.16	-0.5
1,840,138	-		RPSI07_RS06905	0.16	+0.9
1,840,138	-		RPSI07_RS06905	0.16	-0.7
1,840,155	+		RPSI07_RS06905	0.20	+0.1
1,840,156	-		RPSI07_RS06905	0.20	+0.7
1,840,156	-		RPSI07_RS06905	0.20	-3.1
1,840,156	-		RPSI07_RS06905	0.20	-1.7
1,840,156	-		RPSI07_RS06905	0.20	+0.9
1,840,217	+		RPSI07_RS06905	0.33	+0.3
1,840,217	+		RPSI07_RS06905	0.33	-1.2
1,840,217	+		RPSI07_RS06905	0.33	-0.9
1,840,217	+		RPSI07_RS06905	0.33	+0.2
1,840,217	+		RPSI07_RS06905	0.33	+1.8
1,840,217	+		RPSI07_RS06905	0.33	+0.4
1,840,218	-		RPSI07_RS06905	0.33	-0.2
1,840,218	-		RPSI07_RS06905	0.33	+0.6
1,840,400	+		RPSI07_RS06905	0.72	-1.1
1,840,401	+		RPSI07_RS06905	0.72	-1.4
1,840,401	+		RPSI07_RS06905	0.72	-1.1
1,840,401	+		RPSI07_RS06905	0.72	-0.4
1,840,401	+		RPSI07_RS06905	0.72	+0.9
1,840,401	+		RPSI07_RS06905	0.72	-1.1
1,840,401	+		RPSI07_RS06905	0.72	+0.4
1,840,402	-		RPSI07_RS06905	0.72	-0.2
1,840,402	-		RPSI07_RS06905	0.72	-0.7
1,840,402	-		RPSI07_RS06905	0.72	+0.9
1,840,402	-		RPSI07_RS06905	0.72	-0.6
1,840,402	-		RPSI07_RS06905	0.72	+2.5
1,840,402	-		RPSI07_RS06905	0.72	+0.7
1,840,402	-		RPSI07_RS06905	0.72	-0.6
1,840,403	+		RPSI07_RS06905	0.73	+2.9
1,840,403	+		RPSI07_RS06905	0.73	+1.7
1,840,403	+		RPSI07_RS06905	0.73	+1.7
1,840,403	+		RPSI07_RS06905	0.73	-1.8
1,840,403	+		RPSI07_RS06905	0.73	+0.7
1,840,404	-		RPSI07_RS06905	0.73	+0.9
1,840,404	-		RPSI07_RS06905	0.73	+0.2
1,840,404	-		RPSI07_RS06905	0.73	-2.1
1,840,404	-		RPSI07_RS06905	0.73	+0.6
1,840,405	-		RPSI07_RS06905	0.73	-1.4
1,840,428	-		RPSI07_RS06905	0.78	-0.4
1,840,428	-		RPSI07_RS06905	0.78	+4.4
1,840,428	-		RPSI07_RS06905	0.78	-0.7
1,840,475	+		RPSI07_RS06905	0.88	-0.3
1,840,476	-		RPSI07_RS06905	0.88	+0.3
1,840,560	+				+0.1
1,840,560	+				-0.3
1,840,560	+				-2.2
1,840,560	+				+0.8
1,840,560	+				-1.0
1,840,561	-				-0.9
1,840,561	-				+1.2
1,840,561	-				-1.4
1,840,561	-				+0.9
1,840,561	-				-0.6
1,840,571	+				-0.5
1,840,571	+				+1.9
1,840,572	-				+4.4
1,840,572	-				-0.8
1,840,572	-				+1.2
1,840,572	-				-0.3
1,840,572	-				-2.7
1,840,572	-				-1.3
1,840,573	-				-0.1
1,840,580	+				+1.5
1,840,580	+				-0.7
1,840,580	+				+1.1
1,840,580	+				-0.2
1,840,581	-				+0.0
1,840,581	-				-1.3
1,840,581	-				+1.2
1,840,581	-				-0.8
1,840,602	+				+0.5
1,840,603	-				-0.2
1,840,603	-				-1.3
1,840,603	-				-0.2
1,840,603	-				-1.2
1,840,766	-		RPSI07_RS24685	0.14	+0.6
1,840,766	-		RPSI07_RS24685	0.14	+1.2
1,840,915	+		RPSI07_RS24685	0.59	-3.5
1,840,945	+		RPSI07_RS24685	0.68	+1.2
1,841,044	+				+0.4
1,841,045	-				+0.2
1,841,076	+				+0.1
1,841,150	+				+1.1
1,841,150	+				-1.8
1,841,151	-				-0.1
1,841,151	-				+0.5
1,841,151	-				+1.3
1,841,151	-				-0.3
1,841,151	-				-0.9
1,841,151	-				-1.3
1,841,151	-				-3.1
1,841,151	-				-0.5
1,841,164	+				+0.7
1,841,165	-				-0.0
1,841,165	-				-0.3
1,841,410	+		RPSI07_RS06910	0.64	-2.6
1,841,411	-		RPSI07_RS06910	0.64	+0.9
1,841,443	-		RPSI07_RS06910	0.76	+0.6
1,841,443	-		RPSI07_RS06910	0.76	+1.8
1,841,443	-		RPSI07_RS06910	0.76	-0.4