Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15220

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS15210 and RPSI07_RS15215 are separated by 94 nucleotidesRPSI07_RS15215 and RPSI07_RS15220 are separated by 54 nucleotidesRPSI07_RS15220 and RPSI07_RS15225 are separated by 49 nucleotidesRPSI07_RS15225 and RPSI07_RS15230 are separated by 115 nucleotides RPSI07_RS15210: RPSI07_RS15210 - DNA-binding response regulator, at 1,575,257 to 1,575,904 _RS15210 RPSI07_RS15215: RPSI07_RS15215 - Hsp20/alpha crystallin family protein, at 1,575,999 to 1,576,421 _RS15215 RPSI07_RS15220: RPSI07_RS15220 - ribonuclease HI, at 1,576,476 to 1,576,931 _RS15220 RPSI07_RS15225: RPSI07_RS15225 - SAM-dependent methyltransferase, at 1,576,981 to 1,577,754 _RS15225 RPSI07_RS15230: RPSI07_RS15230 - hydroxyacylglutathione hydrolase, at 1,577,870 to 1,578,697 _RS15230 Position (kb) 1576 1577Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1575.520 kb on + strand, within RPSI07_RS15210at 1575.520 kb on + strand, within RPSI07_RS15210at 1575.521 kb on + strand, within RPSI07_RS15210at 1575.521 kb on + strand, within RPSI07_RS15210at 1575.521 kb on + strand, within RPSI07_RS15210at 1575.521 kb on + strand, within RPSI07_RS15210at 1575.521 kb on + strand, within RPSI07_RS15210at 1575.522 kb on - strand, within RPSI07_RS15210at 1575.522 kb on - strand, within RPSI07_RS15210at 1575.522 kb on - strand, within RPSI07_RS15210at 1575.522 kb on - strand, within RPSI07_RS15210at 1575.522 kb on - strand, within RPSI07_RS15210at 1575.557 kb on + strand, within RPSI07_RS15210at 1575.558 kb on - strand, within RPSI07_RS15210at 1575.626 kb on + strand, within RPSI07_RS15210at 1575.626 kb on + strand, within RPSI07_RS15210at 1575.626 kb on + strand, within RPSI07_RS15210at 1575.626 kb on + strand, within RPSI07_RS15210at 1575.626 kb on + strand, within RPSI07_RS15210at 1575.626 kb on + strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.627 kb on - strand, within RPSI07_RS15210at 1575.726 kb on - strand, within RPSI07_RS15210at 1575.726 kb on - strand, within RPSI07_RS15210at 1575.803 kb on + strand, within RPSI07_RS15210at 1575.803 kb on + strand, within RPSI07_RS15210at 1575.803 kb on + strand, within RPSI07_RS15210at 1575.803 kb on + strand, within RPSI07_RS15210at 1575.803 kb on + strand, within RPSI07_RS15210at 1575.804 kb on - strand, within RPSI07_RS15210at 1576.018 kb on - strandat 1576.018 kb on - strandat 1576.137 kb on + strand, within RPSI07_RS15215at 1576.138 kb on - strand, within RPSI07_RS15215at 1576.138 kb on - strand, within RPSI07_RS15215at 1576.279 kb on - strand, within RPSI07_RS15215at 1576.347 kb on + strand, within RPSI07_RS15215at 1576.948 kb on - strandat 1576.948 kb on - strandat 1577.088 kb on + strand, within RPSI07_RS15225at 1577.088 kb on + strand, within RPSI07_RS15225at 1577.088 kb on + strand, within RPSI07_RS15225at 1577.088 kb on + strand, within RPSI07_RS15225at 1577.089 kb on - strand, within RPSI07_RS15225at 1577.839 kb on + strandat 1577.840 kb on - strandat 1577.840 kb on - strandat 1577.840 kb on - strandat 1577.840 kb on - strandat 1577.842 kb on - strandat 1577.927 kb on + strandat 1577.927 kb on + strandat 1577.928 kb on - strandat 1577.928 kb on - strandat 1577.928 kb on - strandat 1577.928 kb on - strandat 1577.928 kb on - strandat 1577.930 kb on - strandat 1577.930 kb on - strandat 1577.930 kb on - strandat 1577.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
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1,575,520 + RPSI07_RS15210 0.41 +0.2
1,575,520 + RPSI07_RS15210 0.41 -0.4
1,575,521 + RPSI07_RS15210 0.41 -3.5
1,575,521 + RPSI07_RS15210 0.41 -0.7
1,575,521 + RPSI07_RS15210 0.41 -3.3
1,575,521 + RPSI07_RS15210 0.41 -0.0
1,575,521 + RPSI07_RS15210 0.41 +1.3
1,575,522 - RPSI07_RS15210 0.41 +2.1
1,575,522 - RPSI07_RS15210 0.41 -0.8
1,575,522 - RPSI07_RS15210 0.41 -1.4
1,575,522 - RPSI07_RS15210 0.41 -1.0
1,575,522 - RPSI07_RS15210 0.41 +1.1
1,575,557 + RPSI07_RS15210 0.46 -0.6
1,575,558 - RPSI07_RS15210 0.46 +0.4
1,575,626 + RPSI07_RS15210 0.57 +2.4
1,575,626 + RPSI07_RS15210 0.57 -0.2
1,575,626 + RPSI07_RS15210 0.57 +2.4
1,575,626 + RPSI07_RS15210 0.57 -0.7
1,575,626 + RPSI07_RS15210 0.57 -1.7
1,575,626 + RPSI07_RS15210 0.57 -2.0
1,575,627 - RPSI07_RS15210 0.57 -1.4
1,575,627 - RPSI07_RS15210 0.57 -1.6
1,575,627 - RPSI07_RS15210 0.57 +0.2
1,575,627 - RPSI07_RS15210 0.57 -3.9
1,575,627 - RPSI07_RS15210 0.57 -0.5
1,575,627 - RPSI07_RS15210 0.57 +1.4
1,575,627 - RPSI07_RS15210 0.57 -0.8
1,575,726 - RPSI07_RS15210 0.72 +0.3
1,575,726 - RPSI07_RS15210 0.72 -0.9
1,575,803 + RPSI07_RS15210 0.84 +1.2
1,575,803 + RPSI07_RS15210 0.84 -0.5
1,575,803 + RPSI07_RS15210 0.84 -0.5
1,575,803 + RPSI07_RS15210 0.84 +1.6
1,575,803 + RPSI07_RS15210 0.84 +0.5
1,575,804 - RPSI07_RS15210 0.84 -2.0
1,576,018 - -2.6
1,576,018 - -0.2
1,576,137 + RPSI07_RS15215 0.33 -0.5
1,576,138 - RPSI07_RS15215 0.33 +0.6
1,576,138 - RPSI07_RS15215 0.33 +0.5
1,576,279 - RPSI07_RS15215 0.66 +1.4
1,576,347 + RPSI07_RS15215 0.82 -0.8
1,576,948 - +1.6
1,576,948 - +0.2
1,577,088 + RPSI07_RS15225 0.14 -0.0
1,577,088 + RPSI07_RS15225 0.14 -0.9
1,577,088 + RPSI07_RS15225 0.14 -1.0
1,577,088 + RPSI07_RS15225 0.14 -1.1
1,577,089 - RPSI07_RS15225 0.14 -1.0
1,577,839 + -1.1
1,577,840 - -0.1
1,577,840 - -0.2
1,577,840 - +1.8
1,577,840 - +1.8
1,577,842 - +0.8
1,577,927 + +0.9
1,577,927 + -1.0
1,577,928 - +0.8
1,577,928 - -0.3
1,577,928 - -0.1
1,577,928 - -1.6
1,577,928 - +0.1
1,577,930 - +2.6
1,577,930 - +1.0
1,577,930 - -1.1
1,577,930 - +1.6

Or see this region's nucleotide sequence