Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS07020

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
1,861,889	+				-2.6
1,861,890	-				-0.4
1,861,890	-				-1.0
1,861,890	-				-0.6
1,861,890	-				+1.1
1,861,890	-				+0.3
1,861,890	-				-0.5
1,861,949	+				-1.1
1,861,949	+				-0.9
1,861,950	-				-1.8
1,861,950	-				-0.3
1,861,950	-				-0.2
1,861,950	-				+0.4
1,861,951	-				-0.2
1,862,099	+		RPSI07_RS24700	0.33	-0.8
1,862,099	+		RPSI07_RS24700	0.33	-0.2
1,862,100	-		RPSI07_RS24700	0.33	-0.2
1,862,185	+		RPSI07_RS24700	0.70	+0.0
1,862,185	+		RPSI07_RS24700	0.70	+0.8
1,862,186	-		RPSI07_RS24700	0.70	-0.3
1,862,187	-		RPSI07_RS24700	0.71	-1.3
1,862,203	+		RPSI07_RS24700	0.77	-1.0
1,862,203	+		RPSI07_RS24700	0.77	-1.1
1,862,203	+		RPSI07_RS24700	0.77	-1.7
1,862,204	-		RPSI07_RS24700	0.78	-3.0
1,862,204	-		RPSI07_RS24700	0.78	+0.2
1,862,204	-		RPSI07_RS24700	0.78	-0.5
1,862,219	+		RPSI07_RS24700	0.84	+0.7
1,862,219	+		RPSI07_RS24700	0.84	+1.7
1,862,220	-		RPSI07_RS24700	0.85	-0.4
1,862,220	-		RPSI07_RS24700	0.85	-1.3
1,862,220	-		RPSI07_RS24700	0.85	-1.1
1,862,220	-		RPSI07_RS24700	0.85	-0.5
1,862,242	+				-0.8
1,862,242	+				+0.8
1,862,242	+				+0.6
1,862,242	+				+1.8
1,862,242	+				-0.2
1,862,242	+				-2.0
1,862,242	+				+2.4
1,862,242	+				+0.8
1,862,243	-				+0.1
1,862,243	-				+1.2
1,862,243	-				-1.5
1,862,243	-				+0.0
1,862,243	-				+0.7
1,862,243	-				-1.6
1,862,243	-				-2.6
1,862,293	-				+2.8
1,862,440	+				-0.8
1,862,441	-				-0.2
1,862,441	-				-0.9
1,862,441	-				+0.3
1,862,472	+		RPSI07_RS07015	0.14	+1.3
1,862,472	+		RPSI07_RS07015	0.14	-1.1
1,862,472	+		RPSI07_RS07015	0.14	-0.8
1,862,472	+		RPSI07_RS07015	0.14	+0.8
1,862,472	+		RPSI07_RS07015	0.14	-0.1
1,862,472	+		RPSI07_RS07015	0.14	-3.1
1,862,472	+		RPSI07_RS07015	0.14	+2.1
1,862,472	+		RPSI07_RS07015	0.14	+0.4
1,862,472	+		RPSI07_RS07015	0.14	+0.6
1,862,473	-		RPSI07_RS07015	0.14	+0.1
1,862,473	-		RPSI07_RS07015	0.14	-0.6
1,862,473	-		RPSI07_RS07015	0.14	-1.4
1,862,473	-		RPSI07_RS07015	0.14	+1.4
1,862,473	-		RPSI07_RS07015	0.14	+0.2
1,862,473	-		RPSI07_RS07015	0.14	+0.2
1,862,473	-		RPSI07_RS07015	0.14	+0.8
1,862,473	-		RPSI07_RS07015	0.14	-0.8
1,862,473	-		RPSI07_RS07015	0.14	+1.0
1,862,640	-		RPSI07_RS07015	0.60	-2.8
1,862,640	-		RPSI07_RS07015	0.60	+0.2
1,862,640	-		RPSI07_RS07015	0.60	+2.2
1,862,640	-		RPSI07_RS07015	0.60	+0.8
1,862,709	+		RPSI07_RS07015	0.79	-1.7
1,862,709	+		RPSI07_RS07015	0.79	+0.5
1,862,710	-		RPSI07_RS07015	0.79	-0.2
1,862,710	-		RPSI07_RS07015	0.79	-0.5
1,862,710	-		RPSI07_RS07015	0.79	-1.6
1,862,784	+				-0.5
1,862,784	+				-0.4
1,862,784	+				-0.9
1,862,784	+				-0.2
1,862,784	+				-0.1
1,862,784	+				+2.0
1,862,784	+				-2.2
1,862,785	-				-1.3
1,862,797	+				+0.7
1,862,797	+				-0.5
1,862,797	+				-0.2
1,862,797	+				+0.8
1,862,797	+				-0.8
1,862,798	-				-0.1
1,862,798	-				-0.4
1,862,798	-				-0.2
1,862,798	-				-0.2
1,862,798	-				+0.3
1,862,843	-				+0.6
1,862,843	-				-0.3
1,862,855	+				-0.8
1,862,855	+				+0.8
1,862,855	+				-1.9
1,862,855	+				+1.6
1,862,855	+				-0.0
1,862,856	-				-0.1
1,862,856	-				-0.4
1,862,856	-				-1.2
1,862,856	-				+0.8
1,862,856	-				-0.8
1,862,905	-				-1.1
1,862,905	-				+0.7
1,862,905	-				+3.6
1,862,919	+				-0.2
1,862,920	-				-0.6
1,862,920	-				-0.3
1,862,920	-				+3.8
1,862,938	-		RPSI07_RS07020	0.11	+0.6
1,862,938	-		RPSI07_RS07020	0.11	-0.4
1,862,980	-		RPSI07_RS07020	0.16	-1.8
1,862,980	-		RPSI07_RS07020	0.16	-0.2
1,862,980	-		RPSI07_RS07020	0.16	+0.5
1,862,980	-		RPSI07_RS07020	0.16	+0.1
1,863,099	+		RPSI07_RS07020	0.31	-1.1
1,863,099	+		RPSI07_RS07020	0.31	+0.8
1,863,099	+		RPSI07_RS07020	0.31	+0.8
1,863,099	+		RPSI07_RS07020	0.31	+1.4
1,863,099	+		RPSI07_RS07020	0.31	+0.6
1,863,099	+		RPSI07_RS07020	0.31	-2.7
1,863,099	+		RPSI07_RS07020	0.31	-0.7
1,863,100	-		RPSI07_RS07020	0.31	-1.3
1,863,100	-		RPSI07_RS07020	0.31	-0.1
1,863,100	-		RPSI07_RS07020	0.31	+0.2
1,863,100	-		RPSI07_RS07020	0.31	-1.2
1,863,100	-		RPSI07_RS07020	0.31	-1.9
1,863,100	-		RPSI07_RS07020	0.31	+2.4
1,863,100	-		RPSI07_RS07020	0.31	+0.2
1,863,155	+		RPSI07_RS07020	0.38	+0.7
1,863,155	+		RPSI07_RS07020	0.38	-0.8
1,863,155	+		RPSI07_RS07020	0.38	-0.2
1,863,156	-		RPSI07_RS07020	0.38	+0.9
1,863,174	-		RPSI07_RS07020	0.40	-1.2
1,863,174	-		RPSI07_RS07020	0.40	+0.7
1,863,210	+		RPSI07_RS07020	0.45	-2.8
1,863,211	-		RPSI07_RS07020	0.45	-0.3
1,863,226	+		RPSI07_RS07020	0.47	-0.2
1,863,226	+		RPSI07_RS07020	0.47	-2.6
1,863,227	-		RPSI07_RS07020	0.47	-0.2
1,863,330	+		RPSI07_RS07020	0.60	+0.5
1,863,330	+		RPSI07_RS07020	0.60	+0.0
1,863,331	-		RPSI07_RS07020	0.60	+2.8
1,863,387	+		RPSI07_RS07020	0.67	+0.2
1,863,387	+		RPSI07_RS07020	0.67	+0.8
1,863,388	-		RPSI07_RS07020	0.67	+0.3
1,863,461	+		RPSI07_RS07020	0.77	-0.7
1,863,461	+		RPSI07_RS07020	0.77	+0.6
1,863,461	+		RPSI07_RS07020	0.77	-0.1
1,863,461	+		RPSI07_RS07020	0.77	-0.6
1,863,461	+		RPSI07_RS07020	0.77	+1.4
1,863,461	+		RPSI07_RS07020	0.77	+0.8
1,863,461	+		RPSI07_RS07020	0.77	-1.6
1,863,461	+		RPSI07_RS07020	0.77	+0.4
1,863,461	+		RPSI07_RS07020	0.77	-0.0
1,863,461	+		RPSI07_RS07020	0.77	-0.1
1,863,461	+		RPSI07_RS07020	0.77	+0.7
1,863,461	+		RPSI07_RS07020	0.77	-1.1
1,863,461	+		RPSI07_RS07020	0.77	-2.1
1,863,462	-		RPSI07_RS07020	0.77	-2.2
1,863,462	-		RPSI07_RS07020	0.77	-2.3
1,863,462	-		RPSI07_RS07020	0.77	+0.2
1,863,462	-		RPSI07_RS07020	0.77	-0.8
1,863,462	-		RPSI07_RS07020	0.77	-1.1
1,863,462	-		RPSI07_RS07020	0.77	-0.7
1,863,462	-		RPSI07_RS07020	0.77	-0.6
1,863,462	-		RPSI07_RS07020	0.77	+0.9
1,863,462	-		RPSI07_RS07020	0.77	+2.4
1,863,505	+		RPSI07_RS07020	0.82	+0.9
1,863,505	+		RPSI07_RS07020	0.82	-0.8
1,863,505	+		RPSI07_RS07020	0.82	-1.0
1,863,505	+		RPSI07_RS07020	0.82	+0.4
1,863,506	-		RPSI07_RS07020	0.82	+0.3
1,863,546	+		RPSI07_RS07020	0.87	-1.1
1,863,547	-		RPSI07_RS07020	0.88	+0.7
1,863,547	-		RPSI07_RS07020	0.88	-0.2
1,863,547	-		RPSI07_RS07020	0.88	+0.8
1,863,547	-		RPSI07_RS07020	0.88	-0.0
1,863,547	-		RPSI07_RS07020	0.88	-1.5
1,863,548	+		RPSI07_RS07020	0.88	-1.5
1,863,548	+		RPSI07_RS07020	0.88	-0.4
1,863,549	-		RPSI07_RS07020	0.88	-1.4
1,863,549	-		RPSI07_RS07020	0.88	+1.7
1,863,683	+				+1.6
1,863,770	+		RPSI07_RS24705	0.21	+1.0
1,863,770	+		RPSI07_RS24705	0.21	+0.1
1,863,830	+		RPSI07_RS24705	0.33	+0.4
1,863,831	-		RPSI07_RS24705	0.34	+1.5
1,863,831	-		RPSI07_RS24705	0.34	-1.0
1,863,831	-		RPSI07_RS24705	0.34	+1.2
1,863,831	-		RPSI07_RS24705	0.34	+0.1
1,863,831	-		RPSI07_RS24705	0.34	-1.7
1,863,831	-		RPSI07_RS24705	0.34	-0.5
1,863,878	+		RPSI07_RS24705	0.43	+4.0
1,863,878	+		RPSI07_RS24705	0.43	+1.0
1,863,880	+		RPSI07_RS24705	0.43	-0.3
1,863,903	+		RPSI07_RS24705	0.48	-0.2
1,863,916	+		RPSI07_RS24705	0.51	+0.2
1,863,928	-		RPSI07_RS24705	0.53	+0.8
1,863,928	-		RPSI07_RS24705	0.53	-0.0
1,863,934	+		RPSI07_RS24705	0.54	-0.7
1,863,935	-		RPSI07_RS24705	0.55	-0.3
1,863,980	-		RPSI07_RS24705	0.64	-0.6
1,863,992	+		RPSI07_RS24705	0.66	-0.3
1,863,993	-		RPSI07_RS24705	0.66	-0.4
1,863,993	-		RPSI07_RS24705	0.66	+2.8
1,863,993	-		RPSI07_RS24705	0.66	+0.5
1,863,993	-		RPSI07_RS24705	0.66	-0.7
1,863,993	-		RPSI07_RS24705	0.66	-2.6
1,863,993	-		RPSI07_RS24705	0.66	-0.4
1,864,023	+		RPSI07_RS24705	0.73	-0.0
1,864,041	+		RPSI07_RS24705	0.76	+0.0
1,864,042	-		RPSI07_RS24705	0.76	-1.8
1,864,042	-		RPSI07_RS24705	0.76	-0.4
1,864,042	-		RPSI07_RS24705	0.76	-0.2
1,864,067	+		RPSI07_RS24705	0.82	+0.8
1,864,080	+		RPSI07_RS24705	0.84	+0.6
1,864,081	-		RPSI07_RS24705	0.84	-1.5
1,864,095	+		RPSI07_RS24705	0.87	-1.7
1,864,095	+		RPSI07_RS24705	0.87	+1.7
1,864,095	+		RPSI07_RS24705	0.87	+0.6
1,864,096	-		RPSI07_RS24705	0.87	+0.7
1,864,106	+		RPSI07_RS24705	0.89	-0.2
1,864,106	+		RPSI07_RS24705	0.89	-0.1
1,864,106	+		RPSI07_RS24705	0.89	+0.6
1,864,106	+		RPSI07_RS24705	0.89	-2.8
1,864,107	-		RPSI07_RS24705	0.90	-2.2
1,864,194	+				+1.4
1,864,208	+				-3.6
1,864,208	+				-1.1
1,864,208	+				+0.8
1,864,208	+				-2.1
1,864,271	+				-0.1
1,864,289	+				-0.2
1,864,289	+				+0.8
1,864,297	-				+0.7
1,864,297	-				+3.0
1,864,297	-				-0.1
1,864,302	+				+0.1
1,864,302	+				+0.6
1,864,353	+				-1.0
1,864,353	+				+0.7
1,864,359	+				+1.4
1,864,360	-				-0.4
1,864,370	-				-2.0
1,864,370	-				+0.8
1,864,422	+				+0.8
1,864,422	+				-0.5
1,864,422	+				-1.9
1,864,422	+				-0.2
1,864,423	-				+0.3
1,864,423	-				+0.1
1,864,442	-				-0.2
1,864,442	-				+2.4
1,864,496	+				-1.1
1,864,496	+				+1.5
1,864,496	+				+0.3
1,864,496	+				+1.8
1,864,497	-				+0.5
1,864,497	-				-0.4
1,864,497	-				+0.0
1,864,537	-				-0.6
1,864,537	-				+3.1
1,864,537	-				+2.6
1,864,573	+				-3.0
1,864,573	+				-0.4
1,864,574	-				+1.8
1,864,574	-				+0.8
1,864,610	+				-0.9