Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06890

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
1,834,701	+		RPSI07_RS06885	0.44	+2.7
1,834,701	+		RPSI07_RS06885	0.44	+1.0
1,834,701	+		RPSI07_RS06885	0.44	+2.4
1,834,701	+		RPSI07_RS06885	0.44	-0.9
1,834,701	+		RPSI07_RS06885	0.44	-1.6
1,834,701	+		RPSI07_RS06885	0.44	+1.6
1,834,701	+		RPSI07_RS06885	0.44	+0.8
1,834,701	+		RPSI07_RS06885	0.44	+1.3
1,834,701	+		RPSI07_RS06885	0.44	-1.9
1,834,701	+		RPSI07_RS06885	0.44	+1.7
1,834,702	-		RPSI07_RS06885	0.44	-1.5
1,834,702	-		RPSI07_RS06885	0.44	+0.2
1,834,702	-		RPSI07_RS06885	0.44	-1.0
1,834,702	-		RPSI07_RS06885	0.44	-1.3
1,834,702	-		RPSI07_RS06885	0.44	+0.8
1,834,702	-		RPSI07_RS06885	0.44	+1.4
1,834,782	+		RPSI07_RS06885	0.49	+0.1
1,834,782	+		RPSI07_RS06885	0.49	-0.4
1,834,782	+		RPSI07_RS06885	0.49	-1.4
1,834,783	-		RPSI07_RS06885	0.49	-1.0
1,834,783	-		RPSI07_RS06885	0.49	+0.1
1,834,783	-		RPSI07_RS06885	0.49	+0.4
1,834,848	+		RPSI07_RS06885	0.53	-0.9
1,834,848	+		RPSI07_RS06885	0.53	+3.4
1,834,848	+		RPSI07_RS06885	0.53	-1.4
1,834,849	-		RPSI07_RS06885	0.53	-0.8
1,834,876	+		RPSI07_RS06885	0.54	-0.4
1,834,876	+		RPSI07_RS06885	0.54	-1.5
1,834,877	-		RPSI07_RS06885	0.54	+0.1
1,834,962	-		RPSI07_RS06885	0.59	-0.3
1,834,962	-		RPSI07_RS06885	0.59	+1.0
1,834,962	-		RPSI07_RS06885	0.59	+2.0
1,834,965	+		RPSI07_RS06885	0.59	-2.2
1,834,965	+		RPSI07_RS06885	0.59	-0.5
1,834,965	+		RPSI07_RS06885	0.59	+0.6
1,834,965	+		RPSI07_RS06885	0.59	+0.3
1,834,965	+		RPSI07_RS06885	0.59	+0.8
1,834,965	+		RPSI07_RS06885	0.59	-0.2
1,834,965	+		RPSI07_RS06885	0.59	+0.3
1,834,965	+		RPSI07_RS06885	0.59	+1.0
1,834,965	+		RPSI07_RS06885	0.59	+2.4
1,834,965	+		RPSI07_RS06885	0.59	-0.4
1,834,965	+		RPSI07_RS06885	0.59	+1.8
1,834,965	+		RPSI07_RS06885	0.59	-0.4
1,834,965	+		RPSI07_RS06885	0.59	-1.1
1,834,965	+		RPSI07_RS06885	0.59	+1.1
1,834,965	+		RPSI07_RS06885	0.59	+0.1
1,834,965	+		RPSI07_RS06885	0.59	-0.3
1,834,965	+		RPSI07_RS06885	0.59	-0.8
1,834,965	+		RPSI07_RS06885	0.59	+0.2
1,834,965	+		RPSI07_RS06885	0.59	-1.1
1,834,965	+		RPSI07_RS06885	0.59	-0.6
1,834,965	+		RPSI07_RS06885	0.59	+0.5
1,834,965	+		RPSI07_RS06885	0.59	-0.3
1,834,965	+		RPSI07_RS06885	0.59	-2.2
1,834,965	+		RPSI07_RS06885	0.59	+1.8
1,834,965	+		RPSI07_RS06885	0.59	-2.6
1,834,965	+		RPSI07_RS06885	0.59	-1.4
1,834,965	+		RPSI07_RS06885	0.59	-0.5
1,834,965	+		RPSI07_RS06885	0.59	+0.2
1,834,965	+		RPSI07_RS06885	0.59	-1.1
1,834,965	+		RPSI07_RS06885	0.59	-0.8
1,834,965	+		RPSI07_RS06885	0.59	-1.7
1,834,966	-		RPSI07_RS06885	0.60	+0.9
1,834,966	-		RPSI07_RS06885	0.60	+0.8
1,834,966	-		RPSI07_RS06885	0.60	-1.0
1,834,966	-		RPSI07_RS06885	0.60	-1.6
1,834,966	-		RPSI07_RS06885	0.60	-0.1
1,834,966	-		RPSI07_RS06885	0.60	+1.2
1,834,966	-		RPSI07_RS06885	0.60	+1.8
1,834,966	-		RPSI07_RS06885	0.60	-0.2
1,834,966	-		RPSI07_RS06885	0.60	+0.7
1,834,966	-		RPSI07_RS06885	0.60	+0.7
1,834,966	-		RPSI07_RS06885	0.60	-0.5
1,834,966	-		RPSI07_RS06885	0.60	-0.5
1,834,966	-		RPSI07_RS06885	0.60	+0.2
1,834,966	-		RPSI07_RS06885	0.60	-0.1
1,834,966	-		RPSI07_RS06885	0.60	-0.3
1,834,966	-		RPSI07_RS06885	0.60	+0.2
1,834,966	-		RPSI07_RS06885	0.60	+0.6
1,834,966	-		RPSI07_RS06885	0.60	-1.2
1,834,966	-		RPSI07_RS06885	0.60	-0.6
1,834,970	-		RPSI07_RS06885	0.60	-0.2
1,834,970	-		RPSI07_RS06885	0.60	+0.0
1,834,982	+		RPSI07_RS06885	0.60	-0.9
1,834,982	+		RPSI07_RS06885	0.60	+0.3
1,835,018	+		RPSI07_RS06885	0.63	-1.0
1,835,019	-		RPSI07_RS06885	0.63	+1.7
1,835,035	+		RPSI07_RS06885	0.64	-0.8
1,835,035	+		RPSI07_RS06885	0.64	-0.8
1,835,036	-		RPSI07_RS06885	0.64	-1.4
1,835,036	-		RPSI07_RS06885	0.64	-1.0
1,835,036	-		RPSI07_RS06885	0.64	+0.9
1,835,036	-		RPSI07_RS06885	0.64	+2.4
1,835,068	+		RPSI07_RS06885	0.66	+4.8
1,835,068	+		RPSI07_RS06885	0.66	+2.5
1,835,068	+		RPSI07_RS06885	0.66	-2.1
1,835,068	+		RPSI07_RS06885	0.66	-1.2
1,835,068	+		RPSI07_RS06885	0.66	-2.7
1,835,068	+		RPSI07_RS06885	0.66	+1.2
1,835,068	+		RPSI07_RS06885	0.66	-0.3
1,835,069	-		RPSI07_RS06885	0.66	+0.5
1,835,069	-		RPSI07_RS06885	0.66	-0.0
1,835,069	-		RPSI07_RS06885	0.66	+1.6
1,835,069	-		RPSI07_RS06885	0.66	-1.0
1,835,069	-		RPSI07_RS06885	0.66	+0.4
1,835,069	-		RPSI07_RS06885	0.66	-0.8
1,835,069	-		RPSI07_RS06885	0.66	-0.1
1,835,069	-		RPSI07_RS06885	0.66	-1.9
1,835,069	-		RPSI07_RS06885	0.66	-1.2
1,835,069	-		RPSI07_RS06885	0.66	-1.0
1,835,073	+		RPSI07_RS06885	0.66	+0.8
1,835,073	+		RPSI07_RS06885	0.66	+0.6
1,835,073	+		RPSI07_RS06885	0.66	+0.0
1,835,073	+		RPSI07_RS06885	0.66	+4.4
1,835,073	+		RPSI07_RS06885	0.66	-0.7
1,835,074	-		RPSI07_RS06885	0.66	-1.2
1,835,074	-		RPSI07_RS06885	0.66	-1.2
1,835,087	+		RPSI07_RS06885	0.67	+0.8
1,835,087	+		RPSI07_RS06885	0.67	+0.4
1,835,088	-		RPSI07_RS06885	0.67	-1.4
1,835,088	-		RPSI07_RS06885	0.67	-0.5
1,835,088	-		RPSI07_RS06885	0.67	+0.3
1,835,088	-		RPSI07_RS06885	0.67	+0.1
1,835,088	-		RPSI07_RS06885	0.67	-2.4
1,835,090	-		RPSI07_RS06885	0.67	-0.5
1,835,175	+		RPSI07_RS06885	0.72	-0.2
1,835,176	-		RPSI07_RS06885	0.72	-0.1
1,835,176	-		RPSI07_RS06885	0.72	+1.8
1,835,189	-		RPSI07_RS06885	0.73	+0.1
1,835,412	+		RPSI07_RS06885	0.86	+0.3
1,835,412	+				+0.8
1,835,412	+		RPSI07_RS06885	0.86	-0.8
1,835,412	+		RPSI07_RS06885	0.86	+0.2
1,835,412	+		RPSI07_RS06885	0.86	+1.0
1,835,412	+		RPSI07_RS06885	0.86	+1.8
1,835,413	-		RPSI07_RS06885	0.86	+0.0
1,835,413	-		RPSI07_RS06885	0.86	+1.3
1,835,429	+		RPSI07_RS06885	0.87	-0.6
1,835,430	-		RPSI07_RS06885	0.87	-0.7
1,835,430	-		RPSI07_RS06885	0.87	-0.7
1,835,430	-		RPSI07_RS06885	0.87	+0.6
1,835,430	-		RPSI07_RS06885	0.87	-2.1
1,835,473	-		RPSI07_RS06885	0.89	+1.0
1,835,473	-		RPSI07_RS06885	0.89	-0.1
1,835,473	-		RPSI07_RS06885	0.89	-3.6
1,835,664	+				-0.3
1,835,666	-				+0.3
1,835,705	+				+2.8
1,835,706	-				+0.8
1,835,706	-				+1.4
1,835,709	-				-0.1
1,835,709	-				-0.7
1,835,784	+		RPSI07_RS06890	0.17	+1.6
1,835,784	+		RPSI07_RS06890	0.17	-0.5
1,835,784	+		RPSI07_RS06890	0.17	+2.0
1,835,785	-		RPSI07_RS06890	0.17	-0.7
1,835,785	-		RPSI07_RS06890	0.17	+0.0
1,835,785	-		RPSI07_RS06890	0.17	+1.0
1,835,785	-		RPSI07_RS06890	0.17	-1.4
1,835,785	-		RPSI07_RS06890	0.17	+2.1
1,835,922	+		RPSI07_RS06890	0.39	-1.1
1,835,923	-		RPSI07_RS06890	0.39	+0.8
1,835,923	-		RPSI07_RS06890	0.39	+1.8
1,835,923	-		RPSI07_RS06890	0.39	-0.6
1,835,923	-		RPSI07_RS06890	0.39	-0.5
1,836,026	+		RPSI07_RS06890	0.56	+0.2
1,836,027	-		RPSI07_RS06890	0.56	+1.6
1,836,027	-		RPSI07_RS06890	0.56	+4.2
1,836,027	-		RPSI07_RS06890	0.56	+1.3
1,836,033	-		RPSI07_RS06890	0.57	-0.9
1,836,033	-		RPSI07_RS06890	0.57	+0.9
1,836,054	+		RPSI07_RS06890	0.61	+1.1
1,836,055	-		RPSI07_RS06890	0.61	-0.2
1,836,058	+		RPSI07_RS06890	0.61	-0.9
1,836,058	+		RPSI07_RS06890	0.61	+1.1
1,836,059	-		RPSI07_RS06890	0.62	-0.5
1,836,059	-		RPSI07_RS06890	0.62	-2.0
1,836,065	+		RPSI07_RS06890	0.63	-2.8
1,836,066	-		RPSI07_RS06890	0.63	-0.5
1,836,095	+		RPSI07_RS06890	0.67	-0.2
1,836,221	+		RPSI07_RS06890	0.88	-1.6
1,836,221	+		RPSI07_RS06890	0.88	-0.8
1,836,221	+		RPSI07_RS06890	0.88	+2.5
1,836,222	-		RPSI07_RS06890	0.88	-1.2
1,836,222	-		RPSI07_RS06890	0.88	-0.2
1,836,222	-		RPSI07_RS06890	0.88	-0.2
1,836,222	-		RPSI07_RS06890	0.88	+1.7
1,836,231	+		RPSI07_RS06890	0.90	+1.7
1,836,231	+		RPSI07_RS06890	0.90	+1.8
1,836,231	+		RPSI07_RS06890	0.90	-0.2
1,836,231	+		RPSI07_RS06890	0.90	-0.4
1,836,231	+		RPSI07_RS06890	0.90	-0.0
1,836,231	+		RPSI07_RS06890	0.90	-0.1
1,836,232	-				-0.1
1,836,232	-				-2.3
1,836,291	+				-1.7
1,836,291	+				-1.8
1,836,329	+				-0.5
1,836,329	+				+2.1
1,836,329	+				-1.0
1,836,329	+				+0.8
1,836,329	+				+3.1
1,836,330	-				-0.6
1,836,347	-				+0.5
1,836,393	+				+0.8
1,836,462	+				+1.5
1,836,462	+				-1.4
1,836,462	+				+0.3
1,836,494	+		RPSI07_RS24675	0.11	-0.5
1,836,494	+		RPSI07_RS24675	0.11	-0.4
1,836,495	-		RPSI07_RS24675	0.11	-0.9
1,836,495	-		RPSI07_RS24675	0.11	-3.4
1,836,683	+		RPSI07_RS24675	0.67	-1.3
1,836,683	+		RPSI07_RS24675	0.67	-0.9
1,836,683	+		RPSI07_RS24675	0.67	+0.5
1,836,684	-		RPSI07_RS24675	0.67	+1.7
1,836,684	-		RPSI07_RS24675	0.67	-1.1
1,836,684	-		RPSI07_RS24675	0.67	-1.0
1,836,684	-		RPSI07_RS24675	0.67	-1.6
1,836,684	-		RPSI07_RS24675	0.67	-2.4
1,836,684	-		RPSI07_RS24675	0.67	+0.3
1,836,684	-		RPSI07_RS24675	0.67	-0.2
1,836,684	-		RPSI07_RS24675	0.67	-0.7
1,836,692	+		RPSI07_RS24675	0.69	-0.2
1,836,692	+		RPSI07_RS24675	0.69	-0.6
1,836,692	+		RPSI07_RS24675	0.69	+1.0
1,836,692	+		RPSI07_RS24675	0.69	+3.1
1,836,693	-		RPSI07_RS24675	0.70	-0.8
1,836,793	+				-0.5
1,836,794	-				-0.9
1,836,794	-				+0.3
1,836,876	+				-0.3
1,836,876	+				-0.7
1,836,877	-				+2.4
1,836,877	-				-1.8
1,836,904	+				+0.4
1,836,904	+				-0.1
1,836,904	+				+4.9
1,836,904	+				+0.1
1,836,904	+				-1.2
1,836,905	-				+0.0
1,836,905	-				+0.5
1,836,979	+				+1.4
1,836,979	+				+0.4
1,836,979	+				-0.0
1,836,979	+				+0.2
1,836,979	+				+1.3
1,836,980	-				+0.5
1,836,980	-				+0.5
1,836,980	-				-0.1
1,836,980	-				+0.2
1,836,980	-				-2.1
1,836,980	-				-0.5
1,836,980	-				+0.2
1,836,980	-				-1.8
1,836,996	+				-0.3
1,836,996	+				+0.2
1,836,996	+				+0.4
1,836,996	+				+2.1
1,836,996	+				-0.6
1,836,997	-				+0.6
1,836,997	-				+2.0
1,836,997	-				-3.4
1,836,997	-				+0.8
1,837,044	+				-0.1
1,837,044	+				-0.7
1,837,045	-				-2.3
1,837,045	-				+0.1
1,837,045	-				+0.3
1,837,046	+				-0.9
1,837,046	+				+1.1
1,837,046	+				+0.4
1,837,046	+				+1.8
1,837,046	+				+2.6
1,837,046	+				+0.4
1,837,046	+				-0.5
1,837,046	+				+0.8
1,837,046	+				-0.7
1,837,046	+				-0.4
1,837,046	+				+0.1
1,837,046	+				-1.0
1,837,047	-				-0.7
1,837,047	-				+0.8
1,837,047	-				+0.3
1,837,047	-				-1.4
1,837,047	-				-0.9
1,837,047	-				+1.8
1,837,047	-				+1.3
1,837,047	-				+0.3
1,837,047	-				+0.3
1,837,047	-				-3.5
1,837,047	-				-0.1
1,837,047	-				-0.2
1,837,047	-				-0.4
1,837,047	-				-0.3
1,837,125	+				+0.1
1,837,126	-				-1.6
1,837,162	+				-0.0
1,837,162	+				+1.6
1,837,162	+				-0.6
1,837,194	+				-1.0
1,837,213	+				+0.2
1,837,213	+				-0.2
1,837,213	+				+2.8
1,837,213	+				-2.3
1,837,214	-				+1.8
1,837,251	+				+0.0
1,837,251	+				+2.8
1,837,251	+				+0.8
1,837,251	+				-1.2
1,837,252	-				+0.4
1,837,252	-				+0.8
1,837,252	-				+1.5
1,837,252	-				+0.0
1,837,281	+				+1.6