Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17485

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17475 and RPSI07_RS17480 are separated by 72 nucleotidesRPSI07_RS17480 and RPSI07_RS17485 are separated by 3 nucleotidesRPSI07_RS17485 and RPSI07_RS17490 are separated by 30 nucleotides RPSI07_RS17475: RPSI07_RS17475 - molybdopterin molybdenumtransferase MoeA, at 2,127,196 to 2,128,455 _RS17475 RPSI07_RS17480: RPSI07_RS17480 - IclR family transcriptional regulator, at 2,128,528 to 2,129,148 _RS17480 RPSI07_RS17485: RPSI07_RS17485 - threonine synthase, at 2,129,152 to 2,130,666 _RS17485 RPSI07_RS17490: RPSI07_RS17490 - homoserine dehydrogenase, at 2,130,697 to 2,132,016 _RS17490 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -1 0 1 2at 2128.511 kb on + strandat 2128.512 kb on - strandat 2128.529 kb on + strandat 2128.724 kb on + strand, within RPSI07_RS17480at 2128.724 kb on + strand, within RPSI07_RS17480at 2128.849 kb on - strand, within RPSI07_RS17480at 2129.154 kb on - strandat 2129.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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2,128,511 + -0.2
2,128,512 - +2.7
2,128,529 + -0.1
2,128,724 + RPSI07_RS17480 0.32 +1.2
2,128,724 + RPSI07_RS17480 0.32 +0.3
2,128,849 - RPSI07_RS17480 0.52 -0.1
2,129,154 - -0.6
2,129,154 - -0.0

Or see this region's nucleotide sequence