Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17805

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17800 and RPSI07_RS17805 are separated by 199 nucleotidesRPSI07_RS17805 and RPSI07_RS17810 are separated by 172 nucleotidesRPSI07_RS17810 and RPSI07_RS17815 are separated by 100 nucleotides RPSI07_RS17800: RPSI07_RS17800 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 2,197,893 to 2,199,209 _RS17800 RPSI07_RS17805: RPSI07_RS17805 - HAD family hydrolase, at 2,199,409 to 2,200,296 _RS17805 RPSI07_RS17810: RPSI07_RS17810 - hypothetical protein, at 2,200,469 to 2,200,795 _RS17810 RPSI07_RS17815: RPSI07_RS17815 - nitrogen regulation protein NR(I), at 2,200,896 to 2,202,407 _RS17815 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -2 -1 0 1 2at 2198.464 kb on + strand, within RPSI07_RS17800at 2198.474 kb on - strand, within RPSI07_RS17800at 2198.474 kb on - strand, within RPSI07_RS17800at 2198.474 kb on - strand, within RPSI07_RS17800at 2198.474 kb on - strand, within RPSI07_RS17800at 2198.508 kb on - strand, within RPSI07_RS17800at 2198.508 kb on - strand, within RPSI07_RS17800at 2198.645 kb on - strand, within RPSI07_RS17800at 2198.758 kb on + strand, within RPSI07_RS17800at 2198.758 kb on + strand, within RPSI07_RS17800at 2198.762 kb on - strand, within RPSI07_RS17800at 2198.780 kb on + strand, within RPSI07_RS17800at 2198.781 kb on - strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.821 kb on + strand, within RPSI07_RS17800at 2198.822 kb on - strand, within RPSI07_RS17800at 2198.822 kb on - strand, within RPSI07_RS17800at 2198.822 kb on - strand, within RPSI07_RS17800at 2198.822 kb on - strand, within RPSI07_RS17800at 2198.845 kb on + strand, within RPSI07_RS17800at 2199.014 kb on - strand, within RPSI07_RS17800at 2199.014 kb on - strand, within RPSI07_RS17800at 2199.026 kb on - strand, within RPSI07_RS17800at 2199.026 kb on - strand, within RPSI07_RS17800at 2199.026 kb on - strand, within RPSI07_RS17800at 2199.026 kb on - strand, within RPSI07_RS17800at 2199.043 kb on + strand, within RPSI07_RS17800at 2199.270 kb on + strandat 2199.308 kb on + strandat 2199.309 kb on - strandat 2199.586 kb on + strand, within RPSI07_RS17805at 2199.586 kb on + strand, within RPSI07_RS17805at 2199.586 kb on + strand, within RPSI07_RS17805at 2199.587 kb on - strand, within RPSI07_RS17805at 2199.928 kb on - strand, within RPSI07_RS17805at 2200.201 kb on + strand, within RPSI07_RS17805at 2200.611 kb on - strand, within RPSI07_RS17810at 2201.167 kb on + strand, within RPSI07_RS17815at 2201.167 kb on + strand, within RPSI07_RS17815

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
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2,198,464 + RPSI07_RS17800 0.43 -0.3
2,198,474 - RPSI07_RS17800 0.44 +0.9
2,198,474 - RPSI07_RS17800 0.44 +1.2
2,198,474 - RPSI07_RS17800 0.44 +0.4
2,198,474 - RPSI07_RS17800 0.44 -0.6
2,198,508 - RPSI07_RS17800 0.47 -0.8
2,198,508 - RPSI07_RS17800 0.47 +0.2
2,198,645 - RPSI07_RS17800 0.57 -0.0
2,198,758 + RPSI07_RS17800 0.66 +2.0
2,198,758 + RPSI07_RS17800 0.66 +1.7
2,198,762 - RPSI07_RS17800 0.66 +1.0
2,198,780 + RPSI07_RS17800 0.67 +1.7
2,198,781 - RPSI07_RS17800 0.67 +0.8
2,198,821 + RPSI07_RS17800 0.70 -1.6
2,198,821 + RPSI07_RS17800 0.70 +0.3
2,198,821 + RPSI07_RS17800 0.70 +0.1
2,198,821 + RPSI07_RS17800 0.70 +0.7
2,198,821 + RPSI07_RS17800 0.70 +0.0
2,198,821 + RPSI07_RS17800 0.70 -0.6
2,198,821 + RPSI07_RS17800 0.70 -0.2
2,198,822 - RPSI07_RS17800 0.71 -1.1
2,198,822 - RPSI07_RS17800 0.71 +1.7
2,198,822 - RPSI07_RS17800 0.71 -0.9
2,198,822 - RPSI07_RS17800 0.71 -1.9
2,198,845 + RPSI07_RS17800 0.72 +1.7
2,199,014 - RPSI07_RS17800 0.85 -0.7
2,199,014 - RPSI07_RS17800 0.85 -1.9
2,199,026 - RPSI07_RS17800 0.86 +1.7
2,199,026 - RPSI07_RS17800 0.86 +1.4
2,199,026 - RPSI07_RS17800 0.86 -0.7
2,199,026 - RPSI07_RS17800 0.86 -1.4
2,199,043 + RPSI07_RS17800 0.87 +0.3
2,199,270 + -1.3
2,199,308 + -0.7
2,199,309 - -0.4
2,199,586 + RPSI07_RS17805 0.20 +0.3
2,199,586 + RPSI07_RS17805 0.20 -1.2
2,199,586 + RPSI07_RS17805 0.20 -0.5
2,199,587 - RPSI07_RS17805 0.20 -2.4
2,199,928 - RPSI07_RS17805 0.58 -0.4
2,200,201 + RPSI07_RS17805 0.89 -0.1
2,200,611 - RPSI07_RS17810 0.43 -0.5
2,201,167 + RPSI07_RS17815 0.18 -1.3
2,201,167 + RPSI07_RS17815 0.18 -1.6

Or see this region's nucleotide sequence