Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15110

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
1,553,885	+		RPSI07_RS15105	0.32	-2.5
1,553,886	-		RPSI07_RS15105	0.32	+0.6
1,553,928	-		RPSI07_RS15105	0.35	+0.7
1,553,941	+		RPSI07_RS15105	0.36	+0.3
1,553,941	+		RPSI07_RS15105	0.36	-0.0
1,553,941	+		RPSI07_RS15105	0.36	+0.5
1,554,053	-		RPSI07_RS15105	0.45	+0.5
1,554,099	+		RPSI07_RS15105	0.48	-0.2
1,554,099	+		RPSI07_RS15105	0.48	-0.6
1,554,099	+		RPSI07_RS15105	0.48	+1.0
1,554,100	-		RPSI07_RS15105	0.48	-1.4
1,554,100	-		RPSI07_RS15105	0.48	+1.2
1,554,123	+		RPSI07_RS15105	0.50	-0.7
1,554,147	+		RPSI07_RS15105	0.52	+1.0
1,554,147	+		RPSI07_RS15105	0.52	+1.8
1,554,230	+		RPSI07_RS15105	0.58	-0.2
1,554,231	+		RPSI07_RS15105	0.58	+0.8
1,554,231	+		RPSI07_RS15105	0.58	+1.7
1,554,232	-		RPSI07_RS15105	0.58	+2.4
1,554,232	-		RPSI07_RS15105	0.58	+0.7
1,554,232	-		RPSI07_RS15105	0.58	-1.2
1,554,232	-		RPSI07_RS15105	0.58	+0.0
1,554,233	+		RPSI07_RS15105	0.58	+0.7
1,554,233	+		RPSI07_RS15105	0.58	+2.7
1,554,233	+		RPSI07_RS15105	0.58	-0.1
1,554,233	+		RPSI07_RS15105	0.58	-0.8
1,554,234	-		RPSI07_RS15105	0.58	+0.2
1,554,234	-		RPSI07_RS15105	0.58	-0.3
1,554,341	+		RPSI07_RS15105	0.66	-0.0
1,554,342	-		RPSI07_RS15105	0.66	+0.2
1,554,361	-		RPSI07_RS15105	0.68	+2.3
1,554,390	+		RPSI07_RS15105	0.70	-1.0
1,554,390	+		RPSI07_RS15105	0.70	+4.3
1,554,391	-		RPSI07_RS15105	0.70	-3.8
1,554,478	+		RPSI07_RS15105	0.77	-0.7
1,554,505	+		RPSI07_RS15105	0.79	-0.3
1,554,653	+		RPSI07_RS15105	0.90	+0.2
1,554,654	-		RPSI07_RS15105	0.90	+1.0
1,554,786	+				+0.7
1,554,786	+				-2.7
1,554,787	-				-0.6
1,554,787	-				-0.3
1,554,842	+				+0.3
1,554,842	+				-1.1
1,554,842	+				+0.7
1,554,842	+				+0.8
1,554,905	-				-0.4
1,554,905	-				-0.1
1,554,974	+				+0.3
1,554,975	-				+1.4
1,554,986	-				+3.0
1,555,048	+				-1.8
1,555,048	+				+0.7
1,555,049	-				+0.3
1,555,076	+				-0.5
1,555,076	+				-0.6
1,555,076	+				+0.2
1,555,076	+				+1.4
1,555,077	-				+1.0
1,555,077	-				-0.5
1,555,077	-				-0.2
1,555,077	-				-0.2
1,555,158	-		RPSI07_RS15110	0.13	-1.3
1,555,404	-		RPSI07_RS15110	0.24	-0.1
1,555,404	-		RPSI07_RS15110	0.24	+0.4
1,555,519	+		RPSI07_RS15110	0.28	-0.1
1,555,519	+		RPSI07_RS15110	0.28	-0.6
1,555,519	+		RPSI07_RS15110	0.28	-1.1
1,555,519	+				-0.3
1,555,519	+		RPSI07_RS15110	0.28	+0.7
1,555,519	+		RPSI07_RS15110	0.28	-0.0
1,555,519	+		RPSI07_RS15110	0.28	-0.9
1,555,519	+		RPSI07_RS15110	0.28	+0.9
1,555,519	+		RPSI07_RS15110	0.28	+2.7
1,555,519	+		RPSI07_RS15110	0.28	+0.1
1,555,519	+		RPSI07_RS15110	0.28	-0.4
1,555,519	+		RPSI07_RS15110	0.28	+1.3
1,555,519	+		RPSI07_RS15110	0.28	-1.1
1,555,519	+		RPSI07_RS15110	0.28	-0.2
1,555,519	+		RPSI07_RS15110	0.28	-0.8
1,555,520	-		RPSI07_RS15110	0.29	+0.3
1,555,520	-		RPSI07_RS15110	0.29	+0.6
1,555,520	-		RPSI07_RS15110	0.29	-0.0
1,555,520	-		RPSI07_RS15110	0.29	+0.3
1,555,520	-		RPSI07_RS15110	0.29	+1.1
1,555,520	-		RPSI07_RS15110	0.29	+2.7
1,555,520	-		RPSI07_RS15110	0.29	+0.4
1,555,520	-		RPSI07_RS15110	0.29	-0.4
1,555,541	+		RPSI07_RS15110	0.29	+1.7
1,555,542	-		RPSI07_RS15110	0.29	-1.0
1,555,546	+		RPSI07_RS15110	0.30	-0.5
1,555,546	+		RPSI07_RS15110	0.30	+0.4
1,555,546	+		RPSI07_RS15110	0.30	+0.4
1,555,547	-		RPSI07_RS15110	0.30	+1.6
1,555,599	+		RPSI07_RS15110	0.32	-0.7
1,555,600	-		RPSI07_RS15110	0.32	-0.6
1,555,600	-		RPSI07_RS15110	0.32	-0.3
1,555,600	-		RPSI07_RS15110	0.32	-1.4
1,555,670	+		RPSI07_RS15110	0.35	-0.6
1,555,670	+		RPSI07_RS15110	0.35	+0.1
1,555,670	+		RPSI07_RS15110	0.35	-1.1
1,555,671	-		RPSI07_RS15110	0.35	+0.6
1,555,671	-		RPSI07_RS15110	0.35	-0.5
1,555,671	-		RPSI07_RS15110	0.35	-2.5
1,555,671	-		RPSI07_RS15110	0.35	-0.1
1,555,784	+		RPSI07_RS15110	0.40	-0.9
1,555,785	-		RPSI07_RS15110	0.40	+1.4
1,555,785	-		RPSI07_RS15110	0.40	-0.3
1,555,966	+		RPSI07_RS15110	0.48	+1.7
1,555,966	+		RPSI07_RS15110	0.48	+0.4
1,555,999	+		RPSI07_RS15110	0.49	-1.6
1,556,011	-		RPSI07_RS15110	0.50	+0.0
1,556,138	+		RPSI07_RS15110	0.55	+1.2
1,556,139	-		RPSI07_RS15110	0.55	-0.6
1,556,139	-		RPSI07_RS15110	0.55	+0.6
1,556,139	-		RPSI07_RS15110	0.55	+1.1
1,556,139	-		RPSI07_RS15110	0.55	-0.5
1,556,333	+		RPSI07_RS15110	0.63	+2.7
1,556,333	+		RPSI07_RS15110	0.63	-0.2
1,556,333	+		RPSI07_RS15110	0.63	+0.1
1,556,334	-		RPSI07_RS15110	0.63	+0.1
1,556,334	-		RPSI07_RS15110	0.63	+0.2
1,556,355	+		RPSI07_RS15110	0.64	-0.2
1,556,355	+		RPSI07_RS15110	0.64	+0.3
1,556,416	+		RPSI07_RS15110	0.67	-1.0
1,556,416	+		RPSI07_RS15110	0.67	+0.5
1,556,416	+		RPSI07_RS15110	0.67	-0.7
1,556,417	-		RPSI07_RS15110	0.67	+0.5
1,556,417	-		RPSI07_RS15110	0.67	+0.7
1,556,417	-		RPSI07_RS15110	0.67	-0.4
1,556,418	-		RPSI07_RS15110	0.67	-1.3
1,556,419	+		RPSI07_RS15110	0.67	-1.0
1,556,419	+		RPSI07_RS15110	0.67	-0.5
1,556,419	+		RPSI07_RS15110	0.67	-0.1
1,556,419	+		RPSI07_RS15110	0.67	-0.9
1,556,420	-		RPSI07_RS15110	0.67	+0.1
1,556,420	-		RPSI07_RS15110	0.67	+0.4
1,556,420	-		RPSI07_RS15110	0.67	+1.1
1,556,482	-		RPSI07_RS15110	0.70	+0.3
1,556,482	-		RPSI07_RS15110	0.70	-0.3
1,556,482	-		RPSI07_RS15110	0.70	-0.6
1,556,572	+		RPSI07_RS15110	0.74	+2.1
1,556,573	-		RPSI07_RS15110	0.74	-0.0
1,556,625	+		RPSI07_RS15110	0.76	-0.9
1,556,626	-		RPSI07_RS15110	0.76	+0.3
1,556,770	+		RPSI07_RS15110	0.82	-0.6
1,556,831	+		RPSI07_RS15110	0.85	+0.4
1,556,856	+		RPSI07_RS15110	0.86	-1.1
1,556,856	+		RPSI07_RS15110	0.86	-0.6
1,556,857	-		RPSI07_RS15110	0.86	+0.7
1,556,857	-		RPSI07_RS15110	0.86	+0.7
1,556,857	-		RPSI07_RS15110	0.86	+0.7
1,556,897	+		RPSI07_RS15110	0.88	+0.2
1,556,897	+		RPSI07_RS15110	0.88	+0.3
1,556,897	+		RPSI07_RS15110	0.88	+1.0
1,556,898	-		RPSI07_RS15110	0.88	-0.6
1,556,972	+				-0.1
1,556,985	+				-0.6
1,556,986	-				+0.7
1,556,986	-				-0.8
1,556,986	-				-1.2
1,556,986	-				+0.7
1,556,992	+				-1.6
1,556,992	+				+1.8
1,556,992	+				-3.1
1,556,993	-				+1.5
1,557,092	+				+0.4
1,557,181	+				-1.4
1,557,181	+				-1.0
1,557,182	-				+3.6
1,557,269	+				-0.0
1,557,270	-				-0.8
1,557,307	+				+1.4
1,557,308	-				+0.5
1,557,308	-				+0.5
1,557,403	+				+0.1
1,557,404	-				+0.2
1,557,409	+				+0.8
1,557,409	+				+0.7
1,557,410	-				+0.9
1,557,410	-				+1.7
1,557,461	-				+0.3
1,557,486	+				+1.2
1,557,486	+				+0.1
1,557,487	-				-0.8
1,557,487	-				-0.9
1,557,487	-				-0.0
1,557,559	-		RPSI07_RS15115	0.19	+1.6
1,557,559	-		RPSI07_RS15115	0.19	-0.2
1,557,677	-		RPSI07_RS15115	0.35	+0.1
1,557,761	+		RPSI07_RS15115	0.47	-0.3
1,557,761	+		RPSI07_RS15115	0.47	+0.4
1,557,762	-		RPSI07_RS15115	0.47	-0.6
1,557,999	+		RPSI07_RS15115	0.81	+1.0
1,558,020	+		RPSI07_RS15115	0.84	-1.0
1,558,049	+		RPSI07_RS15115	0.88	-1.9
1,558,068	+				-0.6
1,558,068	+				-0.3
1,558,068	+				+1.1
1,558,069	-				+0.7
1,558,069	-				+0.2
1,558,069	-				-1.7
1,558,069	-				+1.9
1,558,070	+				+0.6
1,558,071	-				+0.1
1,558,071	-				-0.8