Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS07435

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS07430 and RPSI07_RS07435 are separated by 18 nucleotidesRPSI07_RS07435 and RPSI07_RS07440 are separated by 67 nucleotides RPSI07_RS07430: RPSI07_RS07430 - FAD-binding oxidoreductase, at 1,968,054 to 1,969,250 _RS07430 RPSI07_RS07435: RPSI07_RS07435 - aldehyde dehydrogenase family protein, at 1,969,269 to 1,970,783 _RS07435 RPSI07_RS07440: RPSI07_RS07440 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,970,851 to 1,971,993 _RS07440 Position (kb) 1969 1970 1971Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1968.272 kb on + strand, within RPSI07_RS07430at 1968.272 kb on + strand, within RPSI07_RS07430at 1968.272 kb on + strand, within RPSI07_RS07430at 1968.272 kb on + strandat 1968.273 kb on - strand, within RPSI07_RS07430at 1968.273 kb on - strand, within RPSI07_RS07430at 1968.273 kb on - strand, within RPSI07_RS07430at 1968.273 kb on - strand, within RPSI07_RS07430at 1968.273 kb on - strand, within RPSI07_RS07430at 1968.273 kb on - strand, within RPSI07_RS07430at 1968.283 kb on + strand, within RPSI07_RS07430at 1968.283 kb on + strand, within RPSI07_RS07430at 1968.284 kb on - strand, within RPSI07_RS07430at 1968.284 kb on - strand, within RPSI07_RS07430at 1968.284 kb on - strand, within RPSI07_RS07430at 1968.284 kb on - strand, within RPSI07_RS07430at 1968.284 kb on - strand, within RPSI07_RS07430at 1968.287 kb on - strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.427 kb on + strand, within RPSI07_RS07430at 1968.428 kb on - strand, within RPSI07_RS07430at 1968.428 kb on - strand, within RPSI07_RS07430at 1968.428 kb on - strand, within RPSI07_RS07430at 1968.706 kb on + strand, within RPSI07_RS07430at 1968.706 kb on + strand, within RPSI07_RS07430at 1968.706 kb on + strand, within RPSI07_RS07430at 1968.706 kb on + strand, within RPSI07_RS07430at 1968.707 kb on - strand, within RPSI07_RS07430at 1968.757 kb on + strand, within RPSI07_RS07430at 1968.757 kb on + strand, within RPSI07_RS07430at 1968.758 kb on - strand, within RPSI07_RS07430at 1968.937 kb on + strand, within RPSI07_RS07430at 1968.938 kb on - strand, within RPSI07_RS07430at 1968.938 kb on - strand, within RPSI07_RS07430at 1968.938 kb on - strand, within RPSI07_RS07430at 1968.938 kb on - strand, within RPSI07_RS07430at 1968.943 kb on + strand, within RPSI07_RS07430at 1968.944 kb on - strand, within RPSI07_RS07430at 1969.027 kb on + strand, within RPSI07_RS07430at 1969.028 kb on - strand, within RPSI07_RS07430at 1969.043 kb on + strand, within RPSI07_RS07430at 1969.043 kb on + strand, within RPSI07_RS07430at 1969.044 kb on - strand, within RPSI07_RS07430at 1969.044 kb on - strand, within RPSI07_RS07430at 1969.044 kb on - strand, within RPSI07_RS07430at 1969.109 kb on - strand, within RPSI07_RS07430at 1969.244 kb on + strandat 1969.315 kb on + strandat 1969.315 kb on + strandat 1969.315 kb on + strandat 1969.315 kb on + strandat 1969.316 kb on - strandat 1969.316 kb on - strandat 1969.316 kb on - strandat 1969.316 kb on - strandat 1969.316 kb on - strandat 1969.345 kb on + strandat 1969.345 kb on + strandat 1969.345 kb on + strandat 1969.345 kb on + strandat 1969.345 kb on + strandat 1969.345 kb on + strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.346 kb on - strandat 1969.579 kb on + strand, within RPSI07_RS07435at 1969.579 kb on + strand, within RPSI07_RS07435at 1969.591 kb on + strand, within RPSI07_RS07435at 1969.591 kb on + strand, within RPSI07_RS07435at 1969.591 kb on + strand, within RPSI07_RS07435at 1969.591 kb on + strand, within RPSI07_RS07435at 1969.592 kb on - strand, within RPSI07_RS07435at 1969.592 kb on - strand, within RPSI07_RS07435at 1969.666 kb on + strand, within RPSI07_RS07435at 1969.666 kb on + strand, within RPSI07_RS07435at 1969.666 kb on + strand, within RPSI07_RS07435at 1969.666 kb on + strand, within RPSI07_RS07435at 1969.666 kb on + strand, within RPSI07_RS07435at 1969.666 kb on + strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.667 kb on - strand, within RPSI07_RS07435at 1969.669 kb on + strand, within RPSI07_RS07435at 1969.669 kb on + strand, within RPSI07_RS07435at 1969.669 kb on + strand, within RPSI07_RS07435at 1969.669 kb on + strand, within RPSI07_RS07435at 1969.669 kb on + strand, within RPSI07_RS07435at 1969.837 kb on + strand, within RPSI07_RS07435at 1969.837 kb on + strand, within RPSI07_RS07435at 1969.837 kb on + strand, within RPSI07_RS07435at 1969.837 kb on + strand, within RPSI07_RS07435at 1969.837 kb on + strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1969.838 kb on - strand, within RPSI07_RS07435at 1970.098 kb on - strand, within RPSI07_RS07435at 1970.098 kb on - strand, within RPSI07_RS07435at 1970.328 kb on + strand, within RPSI07_RS07435at 1970.422 kb on + strand, within RPSI07_RS07435at 1970.423 kb on - strand, within RPSI07_RS07435at 1970.752 kb on + strandat 1970.753 kb on - strandat 1970.848 kb on + strandat 1970.849 kb on - strandat 1970.888 kb on + strandat 1970.888 kb on + strandat 1970.889 kb on - strandat 1970.901 kb on + strandat 1970.902 kb on - strandat 1970.963 kb on + strandat 1970.964 kb on - strandat 1970.990 kb on + strand, within RPSI07_RS07440at 1971.054 kb on - strand, within RPSI07_RS07440at 1971.059 kb on + strand, within RPSI07_RS07440at 1971.059 kb on + strand, within RPSI07_RS07440at 1971.060 kb on - strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.102 kb on - strand, within RPSI07_RS07440at 1971.102 kb on - strand, within RPSI07_RS07440at 1971.165 kb on - strand, within RPSI07_RS07440at 1971.165 kb on - strand, within RPSI07_RS07440at 1971.165 kb on - strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.306 kb on - strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.633 kb on - strand, within RPSI07_RS07440at 1971.633 kb on - strand, within RPSI07_RS07440at 1971.667 kb on + strand, within RPSI07_RS07440

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
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1,968,272 + RPSI07_RS07430 0.18 -1.0
1,968,272 + RPSI07_RS07430 0.18 +0.9
1,968,272 + RPSI07_RS07430 0.18 +0.2
1,968,272 + +0.6
1,968,273 - RPSI07_RS07430 0.18 -0.1
1,968,273 - RPSI07_RS07430 0.18 -2.7
1,968,273 - RPSI07_RS07430 0.18 +0.5
1,968,273 - RPSI07_RS07430 0.18 +0.4
1,968,273 - RPSI07_RS07430 0.18 -1.8
1,968,273 - RPSI07_RS07430 0.18 +1.5
1,968,283 + RPSI07_RS07430 0.19 -1.3
1,968,283 + RPSI07_RS07430 0.19 +0.9
1,968,284 - RPSI07_RS07430 0.19 -2.4
1,968,284 - RPSI07_RS07430 0.19 -0.7
1,968,284 - RPSI07_RS07430 0.19 -0.6
1,968,284 - RPSI07_RS07430 0.19 -0.9
1,968,284 - RPSI07_RS07430 0.19 +2.5
1,968,287 - RPSI07_RS07430 0.19 +0.3
1,968,427 + RPSI07_RS07430 0.31 +0.9
1,968,427 + RPSI07_RS07430 0.31 +3.4
1,968,427 + RPSI07_RS07430 0.31 +1.0
1,968,427 + RPSI07_RS07430 0.31 +0.2
1,968,427 + RPSI07_RS07430 0.31 -1.4
1,968,427 + RPSI07_RS07430 0.31 -0.4
1,968,427 + RPSI07_RS07430 0.31 -2.5
1,968,428 - RPSI07_RS07430 0.31 -0.1
1,968,428 - RPSI07_RS07430 0.31 +0.6
1,968,428 - RPSI07_RS07430 0.31 -0.2
1,968,706 + RPSI07_RS07430 0.54 +1.4
1,968,706 + RPSI07_RS07430 0.54 -0.8
1,968,706 + RPSI07_RS07430 0.54 -0.7
1,968,706 + RPSI07_RS07430 0.54 -1.3
1,968,707 - RPSI07_RS07430 0.55 +0.7
1,968,757 + RPSI07_RS07430 0.59 -0.1
1,968,757 + RPSI07_RS07430 0.59 +0.1
1,968,758 - RPSI07_RS07430 0.59 -0.1
1,968,937 + RPSI07_RS07430 0.74 -1.1
1,968,938 - RPSI07_RS07430 0.74 +0.7
1,968,938 - RPSI07_RS07430 0.74 -1.1
1,968,938 - RPSI07_RS07430 0.74 +0.2
1,968,938 - RPSI07_RS07430 0.74 -0.4
1,968,943 + RPSI07_RS07430 0.74 -0.7
1,968,944 - RPSI07_RS07430 0.74 +0.6
1,969,027 + RPSI07_RS07430 0.81 +2.5
1,969,028 - RPSI07_RS07430 0.81 +0.0
1,969,043 + RPSI07_RS07430 0.83 +1.6
1,969,043 + RPSI07_RS07430 0.83 -0.6
1,969,044 - RPSI07_RS07430 0.83 +2.6
1,969,044 - RPSI07_RS07430 0.83 -0.5
1,969,044 - RPSI07_RS07430 0.83 +0.7
1,969,109 - RPSI07_RS07430 0.88 -0.1
1,969,244 + -0.3
1,969,315 + +1.8
1,969,315 + +0.0
1,969,315 + +1.8
1,969,315 + +0.1
1,969,316 - +1.0
1,969,316 - +1.6
1,969,316 - -1.3
1,969,316 - -0.4
1,969,316 - -0.5
1,969,345 + +0.0
1,969,345 + +0.3
1,969,345 + -2.8
1,969,345 + -1.5
1,969,345 + -0.1
1,969,345 + -1.4
1,969,346 - +0.5
1,969,346 - -1.4
1,969,346 - +0.2
1,969,346 - -0.0
1,969,346 - +0.7
1,969,346 - +0.6
1,969,346 - +1.3
1,969,346 - -0.8
1,969,346 - +0.6
1,969,579 + RPSI07_RS07435 0.20 +0.3
1,969,579 + RPSI07_RS07435 0.20 +1.6
1,969,591 + RPSI07_RS07435 0.21 -1.1
1,969,591 + RPSI07_RS07435 0.21 +2.4
1,969,591 + RPSI07_RS07435 0.21 -0.8
1,969,591 + RPSI07_RS07435 0.21 -2.3
1,969,592 - RPSI07_RS07435 0.21 +0.4
1,969,592 - RPSI07_RS07435 0.21 +1.0
1,969,666 + RPSI07_RS07435 0.26 -0.4
1,969,666 + RPSI07_RS07435 0.26 -0.6
1,969,666 + RPSI07_RS07435 0.26 -0.6
1,969,666 + RPSI07_RS07435 0.26 +1.2
1,969,666 + RPSI07_RS07435 0.26 -0.3
1,969,666 + RPSI07_RS07435 0.26 -0.7
1,969,667 - RPSI07_RS07435 0.26 +0.4
1,969,667 - RPSI07_RS07435 0.26 +0.9
1,969,667 - RPSI07_RS07435 0.26 +0.6
1,969,667 - RPSI07_RS07435 0.26 +0.1
1,969,667 - RPSI07_RS07435 0.26 +2.2
1,969,667 - RPSI07_RS07435 0.26 -0.4
1,969,667 - RPSI07_RS07435 0.26 +2.8
1,969,669 + RPSI07_RS07435 0.26 +3.4
1,969,669 + RPSI07_RS07435 0.26 -1.2
1,969,669 + RPSI07_RS07435 0.26 -1.6
1,969,669 + RPSI07_RS07435 0.26 -0.4
1,969,669 + RPSI07_RS07435 0.26 +0.4
1,969,837 + RPSI07_RS07435 0.37 +1.6
1,969,837 + RPSI07_RS07435 0.37 -1.7
1,969,837 + RPSI07_RS07435 0.37 +3.1
1,969,837 + RPSI07_RS07435 0.37 +0.8
1,969,837 + RPSI07_RS07435 0.37 -1.9
1,969,838 - RPSI07_RS07435 0.38 -0.2
1,969,838 - RPSI07_RS07435 0.38 +0.6
1,969,838 - RPSI07_RS07435 0.38 +0.4
1,969,838 - RPSI07_RS07435 0.38 -1.0
1,969,838 - RPSI07_RS07435 0.38 +1.4
1,969,838 - RPSI07_RS07435 0.38 -0.2
1,969,838 - RPSI07_RS07435 0.38 +3.4
1,970,098 - RPSI07_RS07435 0.55 -0.9
1,970,098 - RPSI07_RS07435 0.55 +0.1
1,970,328 + RPSI07_RS07435 0.70 -1.7
1,970,422 + RPSI07_RS07435 0.76 -0.7
1,970,423 - RPSI07_RS07435 0.76 -0.9
1,970,752 + +3.3
1,970,753 - -0.9
1,970,848 + -1.0
1,970,849 - -1.5
1,970,888 + +0.4
1,970,888 + +0.3
1,970,889 - +0.7
1,970,901 + +0.4
1,970,902 - -0.1
1,970,963 + -1.3
1,970,964 - +1.0
1,970,990 + RPSI07_RS07440 0.12 -1.7
1,971,054 - RPSI07_RS07440 0.18 +0.6
1,971,059 + RPSI07_RS07440 0.18 +1.2
1,971,059 + RPSI07_RS07440 0.18 -1.7
1,971,060 - RPSI07_RS07440 0.18 +0.0
1,971,068 + RPSI07_RS07440 0.19 +0.7
1,971,068 + RPSI07_RS07440 0.19 -1.0
1,971,068 + RPSI07_RS07440 0.19 +1.3
1,971,068 + RPSI07_RS07440 0.19 -2.2
1,971,068 + RPSI07_RS07440 0.19 +1.3
1,971,101 + RPSI07_RS07440 0.22 -1.3
1,971,101 + RPSI07_RS07440 0.22 -1.3
1,971,101 + RPSI07_RS07440 0.22 -0.7
1,971,101 + RPSI07_RS07440 0.22 +0.6
1,971,102 - RPSI07_RS07440 0.22 +0.1
1,971,102 - RPSI07_RS07440 0.22 -0.8
1,971,165 - RPSI07_RS07440 0.27 +0.4
1,971,165 - RPSI07_RS07440 0.27 -2.2
1,971,165 - RPSI07_RS07440 0.27 +1.6
1,971,305 + RPSI07_RS07440 0.40 -1.2
1,971,305 + RPSI07_RS07440 0.40 +0.7
1,971,305 + RPSI07_RS07440 0.40 +0.5
1,971,305 + RPSI07_RS07440 0.40 +0.2
1,971,306 - RPSI07_RS07440 0.40 -0.3
1,971,632 + RPSI07_RS07440 0.68 -1.9
1,971,632 + RPSI07_RS07440 0.68 -0.2
1,971,632 + RPSI07_RS07440 0.68 -2.2
1,971,632 + RPSI07_RS07440 0.68 +2.9
1,971,632 + RPSI07_RS07440 0.68 +0.6
1,971,632 + RPSI07_RS07440 0.68 -0.3
1,971,632 + RPSI07_RS07440 0.68 +1.2
1,971,632 + RPSI07_RS07440 0.68 -0.8
1,971,633 - RPSI07_RS07440 0.68 -0.3
1,971,633 - RPSI07_RS07440 0.68 +0.1
1,971,667 + RPSI07_RS07440 0.71 +1.0

Or see this region's nucleotide sequence