Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS12330

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS12325 and RPSI07_RS12330 are separated by 95 nucleotidesRPSI07_RS12330 and RPSI07_RS12335 are separated by 18 nucleotides RPSI07_RS12325: RPSI07_RS12325 - signal peptidase, at 960,203 to 961,219 _RS12325 RPSI07_RS12330: RPSI07_RS12330 - hypothetical protein, at 961,315 to 961,587 _RS12330 RPSI07_RS12335: RPSI07_RS12335 - type II toxin-antitoxin system HipA family toxin, at 961,606 to 962,931 _RS12335 Position (kb) 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 960.323 kb on + strand, within RPSI07_RS12325at 960.324 kb on - strand, within RPSI07_RS12325at 960.416 kb on + strand, within RPSI07_RS12325at 960.416 kb on + strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.605 kb on + strand, within RPSI07_RS12325at 960.605 kb on + strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.643 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.732 kb on - strand, within RPSI07_RS12325at 960.732 kb on - strand, within RPSI07_RS12325at 960.826 kb on + strand, within RPSI07_RS12325at 960.826 kb on + strand, within RPSI07_RS12325at 960.827 kb on - strand, within RPSI07_RS12325at 960.827 kb on - strand, within RPSI07_RS12325at 960.909 kb on - strand, within RPSI07_RS12325at 960.950 kb on + strand, within RPSI07_RS12325at 960.951 kb on - strand, within RPSI07_RS12325at 960.951 kb on - strand, within RPSI07_RS12325at 961.272 kb on + strandat 961.272 kb on + strandat 961.273 kb on - strandat 961.273 kb on - strandat 961.394 kb on + strand, within RPSI07_RS12330at 961.450 kb on + strand, within RPSI07_RS12330at 961.530 kb on + strand, within RPSI07_RS12330at 961.530 kb on + strand, within RPSI07_RS12330at 961.530 kb on + strand, within RPSI07_RS12330at 961.530 kb on + strand, within RPSI07_RS12330at 961.585 kb on + strandat 961.586 kb on - strandat 961.586 kb on - strandat 961.806 kb on - strand, within RPSI07_RS12335at 961.806 kb on - strand, within RPSI07_RS12335at 961.856 kb on + strand, within RPSI07_RS12335at 961.857 kb on - strand, within RPSI07_RS12335at 961.857 kb on - strand, within RPSI07_RS12335at 961.928 kb on + strand, within RPSI07_RS12335at 961.928 kb on + strand, within RPSI07_RS12335at 961.928 kb on + strand, within RPSI07_RS12335at 962.138 kb on + strand, within RPSI07_RS12335at 962.138 kb on + strand, within RPSI07_RS12335at 962.139 kb on - strand, within RPSI07_RS12335at 962.139 kb on - strand, within RPSI07_RS12335at 962.180 kb on + strand, within RPSI07_RS12335at 962.181 kb on - strand, within RPSI07_RS12335at 962.181 kb on - strand, within RPSI07_RS12335at 962.346 kb on - strand, within RPSI07_RS12335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
remove
960,323 + RPSI07_RS12325 0.12 -0.1
960,324 - RPSI07_RS12325 0.12 -0.1
960,416 + RPSI07_RS12325 0.21 -0.7
960,416 + RPSI07_RS12325 0.21 +1.5
960,417 - RPSI07_RS12325 0.21 +0.1
960,417 - RPSI07_RS12325 0.21 -0.1
960,417 - RPSI07_RS12325 0.21 +2.1
960,417 - RPSI07_RS12325 0.21 -2.6
960,605 + RPSI07_RS12325 0.40 +3.8
960,605 + RPSI07_RS12325 0.40 -0.1
960,606 - RPSI07_RS12325 0.40 -0.1
960,606 - RPSI07_RS12325 0.40 +1.5
960,606 - RPSI07_RS12325 0.40 -0.4
960,606 - RPSI07_RS12325 0.40 -1.1
960,643 + RPSI07_RS12325 0.43 +0.9
960,644 + RPSI07_RS12325 0.43 -0.4
960,644 + RPSI07_RS12325 0.43 -1.7
960,644 + RPSI07_RS12325 0.43 -3.0
960,644 + RPSI07_RS12325 0.43 -0.3
960,644 + RPSI07_RS12325 0.43 +1.9
960,644 + RPSI07_RS12325 0.43 +1.7
960,645 - RPSI07_RS12325 0.43 +0.0
960,645 - RPSI07_RS12325 0.43 -1.6
960,645 - RPSI07_RS12325 0.43 -0.5
960,645 - RPSI07_RS12325 0.43 -0.4
960,645 - RPSI07_RS12325 0.43 -0.5
960,645 - RPSI07_RS12325 0.43 +1.5
960,645 - RPSI07_RS12325 0.43 +1.5
960,645 - RPSI07_RS12325 0.43 +0.3
960,645 - RPSI07_RS12325 0.43 +0.3
960,732 - RPSI07_RS12325 0.52 +0.5
960,732 - RPSI07_RS12325 0.52 -1.4
960,826 + RPSI07_RS12325 0.61 +0.2
960,826 + RPSI07_RS12325 0.61 -0.3
960,827 - RPSI07_RS12325 0.61 +0.9
960,827 - RPSI07_RS12325 0.61 -0.5
960,909 - RPSI07_RS12325 0.69 -0.9
960,950 + RPSI07_RS12325 0.73 -0.1
960,951 - RPSI07_RS12325 0.74 -1.2
960,951 - RPSI07_RS12325 0.74 -0.3
961,272 + +0.5
961,272 + -0.9
961,273 - +2.3
961,273 - -1.2
961,394 + RPSI07_RS12330 0.29 -2.2
961,450 + RPSI07_RS12330 0.49 -1.7
961,530 + RPSI07_RS12330 0.79 +0.2
961,530 + RPSI07_RS12330 0.79 +0.5
961,530 + RPSI07_RS12330 0.79 +2.5
961,530 + RPSI07_RS12330 0.79 +0.5
961,585 + +2.5
961,586 - +1.5
961,586 - -2.1
961,806 - RPSI07_RS12335 0.15 +3.1
961,806 - RPSI07_RS12335 0.15 +5.3
961,856 + RPSI07_RS12335 0.19 +3.3
961,857 - RPSI07_RS12335 0.19 +2.9
961,857 - RPSI07_RS12335 0.19 +3.2
961,928 + RPSI07_RS12335 0.24 +2.8
961,928 + RPSI07_RS12335 0.24 +3.3
961,928 + RPSI07_RS12335 0.24 +2.7
962,138 + RPSI07_RS12335 0.40 +5.1
962,138 + RPSI07_RS12335 0.40 +3.3
962,139 - RPSI07_RS12335 0.40 +1.7
962,139 - RPSI07_RS12335 0.40 +2.6
962,180 + RPSI07_RS12335 0.43 +0.7
962,181 - RPSI07_RS12335 0.43 +2.9
962,181 - RPSI07_RS12335 0.43 +1.1
962,346 - RPSI07_RS12335 0.56 +2.9

Or see this region's nucleotide sequence