Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS09320

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS09310 and RPSI07_RS09315 are separated by 76 nucleotidesRPSI07_RS09315 and RPSI07_RS09320 are separated by 15 nucleotidesRPSI07_RS09320 and RPSI07_RS09325 are separated by 116 nucleotides RPSI07_RS09310: RPSI07_RS09310 - hypothetical protein, at 311,319 to 311,600 _RS09310 RPSI07_RS09315: RPSI07_RS09315 - transglutaminase family protein, at 311,677 to 312,537 _RS09315 RPSI07_RS09320: RPSI07_RS09320 - hypothetical protein, at 312,553 to 312,813 _RS09320 RPSI07_RS09325: RPSI07_RS09325 - lipid A biosynthesis lauroyl acyltransferase, at 312,930 to 313,997 _RS09325 Position (kb) 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 311.598 kb on + strandat 311.614 kb on + strandat 311.614 kb on + strandat 311.614 kb on + strandat 311.615 kb on - strandat 311.615 kb on - strandat 311.615 kb on - strandat 311.676 kb on + strandat 311.676 kb on + strandat 311.676 kb on + strandat 311.677 kb on - strandat 311.677 kb on - strandat 311.692 kb on + strandat 311.710 kb on + strandat 311.889 kb on + strand, within RPSI07_RS09315at 311.890 kb on - strand, within RPSI07_RS09315at 311.896 kb on + strand, within RPSI07_RS09315at 311.896 kb on + strand, within RPSI07_RS09315at 311.897 kb on - strand, within RPSI07_RS09315at 311.946 kb on - strand, within RPSI07_RS09315at 311.946 kb on - strand, within RPSI07_RS09315at 311.946 kb on - strand, within RPSI07_RS09315at 311.946 kb on - strand, within RPSI07_RS09315at 312.007 kb on + strand, within RPSI07_RS09315at 312.007 kb on + strand, within RPSI07_RS09315at 312.109 kb on + strand, within RPSI07_RS09315at 312.160 kb on - strand, within RPSI07_RS09315at 312.193 kb on + strand, within RPSI07_RS09315at 312.193 kb on + strand, within RPSI07_RS09315at 312.193 kb on + strand, within RPSI07_RS09315at 312.193 kb on + strand, within RPSI07_RS09315at 312.193 kb on + strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.194 kb on - strand, within RPSI07_RS09315at 312.262 kb on + strand, within RPSI07_RS09315at 312.262 kb on + strand, within RPSI07_RS09315at 312.334 kb on + strand, within RPSI07_RS09315at 312.334 kb on + strand, within RPSI07_RS09315at 312.335 kb on - strand, within RPSI07_RS09315at 312.362 kb on + strand, within RPSI07_RS09315at 312.554 kb on + strandat 312.554 kb on + strandat 312.554 kb on + strandat 312.554 kb on + strandat 312.554 kb on + strandat 312.555 kb on - strandat 312.555 kb on - strandat 312.555 kb on - strandat 312.721 kb on + strand, within RPSI07_RS09320at 312.721 kb on + strand, within RPSI07_RS09320at 312.747 kb on + strand, within RPSI07_RS09320at 312.747 kb on + strand, within RPSI07_RS09320at 312.748 kb on - strand, within RPSI07_RS09320at 312.748 kb on - strand, within RPSI07_RS09320at 312.748 kb on - strand, within RPSI07_RS09320at 312.748 kb on - strand, within RPSI07_RS09320at 312.748 kb on - strand, within RPSI07_RS09320at 312.773 kb on + strand, within RPSI07_RS09320at 312.774 kb on + strand, within RPSI07_RS09320at 312.774 kb on + strand, within RPSI07_RS09320at 312.774 kb on + strand, within RPSI07_RS09320at 312.775 kb on - strand, within RPSI07_RS09320at 312.775 kb on - strand, within RPSI07_RS09320at 312.775 kb on - strand, within RPSI07_RS09320at 312.775 kb on - strand, within RPSI07_RS09320at 312.775 kb on - strand, within RPSI07_RS09320at 312.775 kb on - strand, within RPSI07_RS09320at 312.794 kb on + strandat 312.905 kb on - strandat 312.935 kb on - strandat 312.985 kb on + strandat 312.985 kb on + strandat 312.985 kb on + strandat 312.985 kb on + strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.986 kb on - strandat 312.988 kb on + strandat 312.988 kb on + strandat 312.988 kb on + strandat 312.988 kb on + strandat 312.988 kb on + strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 312.989 kb on - strandat 313.102 kb on + strand, within RPSI07_RS09325at 313.102 kb on + strand, within RPSI07_RS09325at 313.102 kb on + strand, within RPSI07_RS09325at 313.102 kb on + strand, within RPSI07_RS09325at 313.102 kb on + strand, within RPSI07_RS09325at 313.102 kb on + strand, within RPSI07_RS09325at 313.103 kb on - strand, within RPSI07_RS09325at 313.103 kb on - strand, within RPSI07_RS09325at 313.103 kb on - strand, within RPSI07_RS09325at 313.103 kb on - strand, within RPSI07_RS09325at 313.103 kb on - strand, within RPSI07_RS09325at 313.103 kb on - strand, within RPSI07_RS09325at 313.111 kb on + strand, within RPSI07_RS09325at 313.111 kb on + strand, within RPSI07_RS09325at 313.394 kb on - strand, within RPSI07_RS09325at 313.394 kb on - strand, within RPSI07_RS09325at 313.394 kb on - strand, within RPSI07_RS09325at 313.423 kb on + strand, within RPSI07_RS09325at 313.424 kb on - strand, within RPSI07_RS09325at 313.424 kb on - strand, within RPSI07_RS09325at 313.424 kb on - strand, within RPSI07_RS09325at 313.424 kb on - strand, within RPSI07_RS09325at 313.576 kb on + strand, within RPSI07_RS09325at 313.576 kb on + strand, within RPSI07_RS09325at 313.576 kb on + strand, within RPSI07_RS09325at 313.577 kb on - strand, within RPSI07_RS09325at 313.577 kb on - strand, within RPSI07_RS09325at 313.577 kb on - strand, within RPSI07_RS09325at 313.577 kb on - strand, within RPSI07_RS09325at 313.577 kb on - strand, within RPSI07_RS09325at 313.577 kb on - strand, within RPSI07_RS09325at 313.673 kb on + strand, within RPSI07_RS09325at 313.674 kb on - strand, within RPSI07_RS09325at 313.674 kb on - strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.800 kb on + strand, within RPSI07_RS09325at 313.801 kb on - strand, within RPSI07_RS09325at 313.801 kb on - strand, within RPSI07_RS09325at 313.801 kb on - strand, within RPSI07_RS09325at 313.801 kb on - strand, within RPSI07_RS09325

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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311,598 + +0.9
311,614 + +1.8
311,614 + +1.0
311,614 + +0.2
311,615 - +0.2
311,615 - -0.2
311,615 - -0.2
311,676 + +0.9
311,676 + +1.7
311,676 + +2.3
311,677 - -0.3
311,677 - +1.8
311,692 + +3.3
311,710 + +0.9
311,889 + RPSI07_RS09315 0.25 +0.8
311,890 - RPSI07_RS09315 0.25 +3.5
311,896 + RPSI07_RS09315 0.25 -0.5
311,896 + RPSI07_RS09315 0.25 -0.2
311,897 - RPSI07_RS09315 0.26 -0.1
311,946 - RPSI07_RS09315 0.31 -1.5
311,946 - RPSI07_RS09315 0.31 +0.9
311,946 - RPSI07_RS09315 0.31 -0.8
311,946 - RPSI07_RS09315 0.31 -0.2
312,007 + RPSI07_RS09315 0.38 -0.3
312,007 + RPSI07_RS09315 0.38 -0.9
312,109 + RPSI07_RS09315 0.50 -0.4
312,160 - RPSI07_RS09315 0.56 +0.3
312,193 + RPSI07_RS09315 0.60 -1.2
312,193 + RPSI07_RS09315 0.60 +3.7
312,193 + RPSI07_RS09315 0.60 -1.2
312,193 + RPSI07_RS09315 0.60 -0.1
312,193 + RPSI07_RS09315 0.60 +0.8
312,194 - RPSI07_RS09315 0.60 +1.2
312,194 - RPSI07_RS09315 0.60 -1.9
312,194 - RPSI07_RS09315 0.60 -1.9
312,194 - RPSI07_RS09315 0.60 -1.6
312,194 - RPSI07_RS09315 0.60 +0.7
312,194 - RPSI07_RS09315 0.60 -1.1
312,194 - RPSI07_RS09315 0.60 +0.1
312,262 + RPSI07_RS09315 0.68 -1.6
312,262 + RPSI07_RS09315 0.68 +0.3
312,334 + RPSI07_RS09315 0.76 -0.3
312,334 + RPSI07_RS09315 0.76 +2.3
312,335 - RPSI07_RS09315 0.76 -0.1
312,362 + RPSI07_RS09315 0.80 +1.7
312,554 + -0.9
312,554 + +0.4
312,554 + +0.5
312,554 + -2.4
312,554 + -1.1
312,555 - +0.8
312,555 - +0.5
312,555 - +2.4
312,721 + RPSI07_RS09320 0.64 -0.4
312,721 + RPSI07_RS09320 0.64 -0.2
312,747 + RPSI07_RS09320 0.74 +0.6
312,747 + RPSI07_RS09320 0.74 +0.9
312,748 - RPSI07_RS09320 0.75 -0.9
312,748 - RPSI07_RS09320 0.75 +3.5
312,748 - RPSI07_RS09320 0.75 -0.5
312,748 - RPSI07_RS09320 0.75 -0.4
312,748 - RPSI07_RS09320 0.75 +0.0
312,773 + RPSI07_RS09320 0.84 -0.9
312,774 + RPSI07_RS09320 0.85 -0.6
312,774 + RPSI07_RS09320 0.85 -0.6
312,774 + RPSI07_RS09320 0.85 -2.6
312,775 - RPSI07_RS09320 0.85 +0.4
312,775 - RPSI07_RS09320 0.85 -0.1
312,775 - RPSI07_RS09320 0.85 +0.7
312,775 - RPSI07_RS09320 0.85 +0.5
312,775 - RPSI07_RS09320 0.85 +1.6
312,775 - RPSI07_RS09320 0.85 +1.9
312,794 + -1.9
312,905 - +0.2
312,935 - -1.7
312,985 + -0.9
312,985 + +1.1
312,985 + -0.4
312,985 + +0.7
312,986 - +2.7
312,986 - +0.3
312,986 - -2.6
312,986 - -2.8
312,986 - +0.5
312,986 - -1.0
312,986 - +0.5
312,986 - -0.1
312,988 + +0.4
312,988 + -0.3
312,988 + -0.1
312,988 + -1.3
312,988 + -0.4
312,989 - -1.0
312,989 - +0.3
312,989 - +0.9
312,989 - +1.5
312,989 - -0.6
312,989 - -0.5
312,989 - -0.0
312,989 - +1.7
312,989 - +0.1
312,989 - +0.3
312,989 - -0.3
313,102 + RPSI07_RS09325 0.16 -1.1
313,102 + RPSI07_RS09325 0.16 -0.4
313,102 + RPSI07_RS09325 0.16 -0.1
313,102 + RPSI07_RS09325 0.16 +0.9
313,102 + RPSI07_RS09325 0.16 -0.1
313,102 + RPSI07_RS09325 0.16 -1.5
313,103 - RPSI07_RS09325 0.16 -0.4
313,103 - RPSI07_RS09325 0.16 +1.9
313,103 - RPSI07_RS09325 0.16 -0.6
313,103 - RPSI07_RS09325 0.16 -0.3
313,103 - RPSI07_RS09325 0.16 -0.4
313,103 - RPSI07_RS09325 0.16 +0.9
313,111 + RPSI07_RS09325 0.17 +0.9
313,111 + RPSI07_RS09325 0.17 -0.2
313,394 - RPSI07_RS09325 0.43 +0.7
313,394 - RPSI07_RS09325 0.43 +2.5
313,394 - RPSI07_RS09325 0.43 -1.7
313,423 + RPSI07_RS09325 0.46 +0.4
313,424 - RPSI07_RS09325 0.46 -1.0
313,424 - RPSI07_RS09325 0.46 -2.0
313,424 - RPSI07_RS09325 0.46 +0.5
313,424 - RPSI07_RS09325 0.46 +0.6
313,576 + RPSI07_RS09325 0.60 +1.7
313,576 + RPSI07_RS09325 0.60 -0.1
313,576 + RPSI07_RS09325 0.60 -0.9
313,577 - RPSI07_RS09325 0.61 -0.2
313,577 - RPSI07_RS09325 0.61 +0.2
313,577 - RPSI07_RS09325 0.61 -0.5
313,577 - RPSI07_RS09325 0.61 +0.6
313,577 - RPSI07_RS09325 0.61 -1.1
313,577 - RPSI07_RS09325 0.61 -1.1
313,673 + RPSI07_RS09325 0.70 -2.2
313,674 - RPSI07_RS09325 0.70 -0.3
313,674 - RPSI07_RS09325 0.70 -0.2
313,800 + RPSI07_RS09325 0.81 +0.3
313,800 + RPSI07_RS09325 0.81 +0.5
313,800 + RPSI07_RS09325 0.81 -1.5
313,800 + RPSI07_RS09325 0.81 -3.1
313,800 + RPSI07_RS09325 0.81 +0.9
313,800 + RPSI07_RS09325 0.81 +0.3
313,800 + RPSI07_RS09325 0.81 -0.4
313,801 - RPSI07_RS09325 0.82 +0.1
313,801 - RPSI07_RS09325 0.82 +2.9
313,801 - RPSI07_RS09325 0.82 +2.5
313,801 - RPSI07_RS09325 0.82 +0.4

Or see this region's nucleotide sequence