Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17590

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17575 and RPSI07_RS17580 are separated by 24 nucleotidesRPSI07_RS17580 and RPSI07_RS17585 are separated by 3 nucleotidesRPSI07_RS17585 and RPSI07_RS17590 are separated by 65 nucleotidesRPSI07_RS17590 and RPSI07_RS17595 are separated by 93 nucleotides RPSI07_RS17575: RPSI07_RS17575 - 50S ribosomal protein L9, at 2,148,909 to 2,149,361 _RS17575 RPSI07_RS17580: RPSI07_RS17580 - 30S ribosomal protein S18, at 2,149,386 to 2,149,673 _RS17580 RPSI07_RS17585: RPSI07_RS17585 - primosomal replication protein N, at 2,149,677 to 2,150,003 _RS17585 RPSI07_RS17590: RPSI07_RS17590 - 30S ribosomal protein S6, at 2,150,069 to 2,150,437 _RS17590 RPSI07_RS17595: RPSI07_RS17595 - asparaginase, at 2,150,531 to 2,151,526 _RS17595 Position (kb) 2150 2151Strain fitness (log2 ratio) -1 0 1at 2149.409 kb on - strandat 2150.622 kb on + strandat 2150.622 kb on + strandat 2150.623 kb on - strandat 2150.851 kb on - strand, within RPSI07_RS17595at 2150.851 kb on - strand, within RPSI07_RS17595at 2151.009 kb on + strand, within RPSI07_RS17595at 2151.009 kb on + strand, within RPSI07_RS17595at 2151.010 kb on - strand, within RPSI07_RS17595at 2151.010 kb on - strand, within RPSI07_RS17595

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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2,149,409 - +1.6
2,150,622 + -1.0
2,150,622 + +0.0
2,150,623 - -1.5
2,150,851 - RPSI07_RS17595 0.32 -0.6
2,150,851 - RPSI07_RS17595 0.32 +0.5
2,151,009 + RPSI07_RS17595 0.48 -1.0
2,151,009 + RPSI07_RS17595 0.48 -0.8
2,151,010 - RPSI07_RS17595 0.48 -1.5
2,151,010 - RPSI07_RS17595 0.48 -0.3

Or see this region's nucleotide sequence