Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16620

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
1,905,544	+		RPSI07_RS16615	0.58	-0.0
1,905,544	+		RPSI07_RS16615	0.58	-0.8
1,905,544	+		RPSI07_RS16615	0.58	+1.0
1,905,544	+		RPSI07_RS16615	0.58	-0.7
1,905,545	-		RPSI07_RS16615	0.58	+1.4
1,905,545	-		RPSI07_RS16615	0.58	-0.7
1,905,545	-		RPSI07_RS16615	0.58	-0.0
1,905,577	+		RPSI07_RS16615	0.60	+0.1
1,905,577	+		RPSI07_RS16615	0.60	-1.1
1,905,578	-		RPSI07_RS16615	0.60	+0.1
1,905,598	+		RPSI07_RS16615	0.61	-0.8
1,905,598	+		RPSI07_RS16615	0.61	+1.0
1,905,598	+		RPSI07_RS16615	0.61	-0.7
1,905,598	+		RPSI07_RS16615	0.61	+0.9
1,905,598	+		RPSI07_RS16615	0.61	-1.9
1,905,598	+		RPSI07_RS16615	0.61	+1.0
1,905,599	-		RPSI07_RS16615	0.61	-0.0
1,905,599	-		RPSI07_RS16615	0.61	-0.2
1,905,639	+		RPSI07_RS16615	0.64	+0.4
1,905,639	+		RPSI07_RS16615	0.64	-0.9
1,905,639	+		RPSI07_RS16615	0.64	-0.5
1,905,639	+		RPSI07_RS16615	0.64	-0.4
1,905,639	+		RPSI07_RS16615	0.64	+0.1
1,905,639	+		RPSI07_RS16615	0.64	+3.8
1,905,639	+		RPSI07_RS16615	0.64	+0.6
1,905,639	+		RPSI07_RS16615	0.64	+0.2
1,905,639	+		RPSI07_RS16615	0.64	-1.7
1,905,639	+		RPSI07_RS16615	0.64	+0.1
1,905,640	-		RPSI07_RS16615	0.64	-0.3
1,905,640	-		RPSI07_RS16615	0.64	+3.3
1,905,640	-		RPSI07_RS16615	0.64	-0.0
1,905,640	-		RPSI07_RS16615	0.64	+0.2
1,905,640	-		RPSI07_RS16615	0.64	+0.6
1,905,640	-		RPSI07_RS16615	0.64	-0.4
1,905,640	-		RPSI07_RS16615	0.64	+1.4
1,905,664	+		RPSI07_RS16615	0.66	+3.0
1,905,664	+		RPSI07_RS16615	0.66	-0.2
1,905,664	+		RPSI07_RS16615	0.66	-0.9
1,905,664	+		RPSI07_RS16615	0.66	-0.5
1,905,664	+		RPSI07_RS16615	0.66	-1.8
1,905,664	+		RPSI07_RS16615	0.66	+1.1
1,905,665	-		RPSI07_RS16615	0.66	+0.5
1,905,665	-		RPSI07_RS16615	0.66	+0.8
1,905,665	-		RPSI07_RS16615	0.66	+0.5
1,905,665	-		RPSI07_RS16615	0.66	+0.6
1,905,665	-		RPSI07_RS16615	0.66	-0.4
1,905,665	-		RPSI07_RS16615	0.66	-0.8
1,905,665	-		RPSI07_RS16615	0.66	-1.2
1,905,665	-		RPSI07_RS16615	0.66	+1.3
1,905,908	-		RPSI07_RS16615	0.82	-0.1
1,905,908	-		RPSI07_RS16615	0.82	-1.5
1,905,908	-		RPSI07_RS16615	0.82	+2.0
1,905,908	-		RPSI07_RS16615	0.82	+1.0
1,905,908	-		RPSI07_RS16615	0.82	+2.5
1,905,908	-		RPSI07_RS16615	0.82	-1.0
1,905,908	-		RPSI07_RS16615	0.82	-0.0
1,905,908	-		RPSI07_RS16615	0.82	-0.7
1,905,908	-		RPSI07_RS16615	0.82	-0.5
1,905,908	-		RPSI07_RS16615	0.82	+0.4
1,905,908	-		RPSI07_RS16615	0.82	+2.3
1,905,908	-		RPSI07_RS16615	0.82	-0.6
1,905,908	-		RPSI07_RS16615	0.82	-0.9
1,905,908	-		RPSI07_RS16615	0.82	+1.0
1,905,908	-		RPSI07_RS16615	0.82	-1.0
1,905,908	-		RPSI07_RS16615	0.82	+1.4
1,905,908	-		RPSI07_RS16615	0.82	-1.2
1,905,908	-		RPSI07_RS16615	0.82	+2.0
1,905,908	-		RPSI07_RS16615	0.82	+0.3
1,905,908	-		RPSI07_RS16615	0.82	+0.3
1,905,908	-		RPSI07_RS16615	0.82	+1.7
1,905,908	-		RPSI07_RS16615	0.82	+3.5
1,905,908	-		RPSI07_RS16615	0.82	-0.2
1,905,908	-		RPSI07_RS16615	0.82	-2.5
1,905,908	-		RPSI07_RS16615	0.82	+0.6
1,905,908	-		RPSI07_RS16615	0.82	+0.2
1,905,908	-		RPSI07_RS16615	0.82	-0.4
1,905,908	-		RPSI07_RS16615	0.82	-1.7
1,905,908	-		RPSI07_RS16615	0.82	+1.3
1,905,908	-		RPSI07_RS16615	0.82	+1.5
1,905,908	-		RPSI07_RS16615	0.82	-0.1
1,905,908	-		RPSI07_RS16615	0.82	+0.5
1,906,250	+				-1.5
1,906,250	+				-1.6
1,906,250	+				-0.3
1,906,258	+				+1.5
1,906,335	+				+1.1
1,906,336	-				+0.8
1,906,336	-				-0.1
1,906,336	-				-1.3
1,906,349	+				-0.6
1,906,349	+				-0.2
1,906,349	+				+1.2
1,906,350	-				-1.1
1,906,350	-				-0.9
1,906,350	-				-1.6
1,906,350	-				+2.0
1,906,350	-				-1.2
1,906,350	-				-0.0
1,906,350	-				-2.4
1,906,421	+				-0.4
1,906,421	+				-0.4
1,906,421	+				+0.1
1,906,422	-				-1.3
1,906,422	-				+0.4
1,906,422	-				+0.5
1,906,427	+				-0.1
1,906,428	-				+2.2
1,906,428	-				+1.0
1,906,440	+				-2.0
1,906,488	-				-0.1
1,906,488	-				-1.5
1,906,519	+				+3.0
1,906,580	+				-1.6
1,906,613	-				+4.4
1,906,614	+				+0.4
1,906,614	+				-0.7
1,906,614	+				+0.4
1,906,614	+				-0.6
1,906,614	+				+0.6
1,906,615	-				+1.0
1,906,615	-				-2.0
1,906,615	-				+1.7
1,906,615	-				-0.9
1,906,615	-				+0.6
1,906,615	-				-0.4
1,906,625	+				+1.0
1,906,625	+				+0.1
1,906,625	+				-0.1
1,906,693	-		RPSI07_RS16620	0.15	+2.0
1,906,700	+		RPSI07_RS16620	0.15	+2.5
1,906,701	-		RPSI07_RS16620	0.15	-0.0
1,906,833	-		RPSI07_RS16620	0.25	-0.0
1,906,883	-		RPSI07_RS16620	0.29	-0.8
1,906,895	+		RPSI07_RS16620	0.30	+0.0
1,906,896	-		RPSI07_RS16620	0.30	+2.3
1,906,896	-		RPSI07_RS16620	0.30	+1.5
1,907,010	-		RPSI07_RS16620	0.39	+2.7
1,907,067	+		RPSI07_RS16620	0.43	-0.6
1,907,068	-		RPSI07_RS16620	0.43	+0.5
1,907,068	-		RPSI07_RS16620	0.43	+0.3
1,907,117	-		RPSI07_RS16620	0.47	+0.4
1,907,120	+		RPSI07_RS16620	0.47	+0.0
1,907,120	+		RPSI07_RS16620	0.47	-0.9
1,907,120	+		RPSI07_RS16620	0.47	+2.0
1,907,121	-		RPSI07_RS16620	0.47	-0.7
1,907,121	-		RPSI07_RS16620	0.47	+0.1
1,907,121	-		RPSI07_RS16620	0.47	-1.1
1,907,192	+		RPSI07_RS16620	0.53	+0.4
1,907,258	+		RPSI07_RS16620	0.58	+2.8
1,907,258	+		RPSI07_RS16620	0.58	-0.2
1,907,258	+		RPSI07_RS16620	0.58	+1.0
1,907,259	-		RPSI07_RS16620	0.58	-1.0
1,907,301	-		RPSI07_RS16620	0.61	-0.3
1,907,303	+		RPSI07_RS16620	0.61	+0.5
1,907,304	-		RPSI07_RS16620	0.61	+2.0
1,907,304	-		RPSI07_RS16620	0.61	-1.0
1,907,349	-		RPSI07_RS16620	0.65	+1.0
1,907,463	+		RPSI07_RS16620	0.74	-0.7
1,907,463	+		RPSI07_RS16620	0.74	-0.4
1,907,464	-		RPSI07_RS16620	0.74	-0.0
1,907,464	-		RPSI07_RS16620	0.74	-0.6
1,907,496	+		RPSI07_RS16620	0.76	-0.5
1,907,510	+		RPSI07_RS16620	0.77	+3.3
1,907,510	+		RPSI07_RS16620	0.77	-1.3
1,907,510	+		RPSI07_RS16620	0.77	-1.2
1,907,510	+		RPSI07_RS16620	0.77	-0.8
1,907,510	+		RPSI07_RS16620	0.77	+1.0
1,907,510	+		RPSI07_RS16620	0.77	-1.1
1,907,511	-		RPSI07_RS16620	0.77	+1.4
1,907,511	-		RPSI07_RS16620	0.77	-1.7
1,907,610	+		RPSI07_RS16620	0.85	+0.5
1,907,610	+		RPSI07_RS16620	0.85	-0.2
1,907,610	+		RPSI07_RS16620	0.85	+1.2
1,907,611	-		RPSI07_RS16620	0.85	-0.6
1,907,627	+		RPSI07_RS16620	0.86	+0.4
1,907,627	+		RPSI07_RS16620	0.86	-3.1
1,907,627	+		RPSI07_RS16620	0.86	+1.0
1,907,627	+		RPSI07_RS16620	0.86	-1.4
1,907,627	+		RPSI07_RS16620	0.86	-0.1
1,907,628	-		RPSI07_RS16620	0.86	+0.0
1,907,628	-		RPSI07_RS16620	0.86	+1.5
1,907,628	-		RPSI07_RS16620	0.86	+0.6
1,907,628	-		RPSI07_RS16620	0.86	-0.6
1,907,628	-		RPSI07_RS16620	0.86	+0.6
1,907,628	-		RPSI07_RS16620	0.86	-0.8
1,907,628	-		RPSI07_RS16620	0.86	+0.2
1,907,629	+		RPSI07_RS16620	0.86	+0.5
1,907,629	+		RPSI07_RS16620	0.86	-1.9
1,907,630	-		RPSI07_RS16620	0.86	+1.5
1,907,657	+		RPSI07_RS16620	0.88	-1.6
1,907,657	+		RPSI07_RS16620	0.88	-0.6
1,907,657	+		RPSI07_RS16620	0.88	+1.0
1,907,657	+		RPSI07_RS16620	0.88	+2.5
1,907,657	+		RPSI07_RS16620	0.88	+0.0
1,907,658	-		RPSI07_RS16620	0.88	-0.9
1,907,658	-		RPSI07_RS16620	0.88	-1.5
1,907,658	-		RPSI07_RS16620	0.88	+1.2
1,907,658	-		RPSI07_RS16620	0.88	+0.3
1,907,658	-		RPSI07_RS16620	0.88	+2.5
1,907,684	+				-2.6
1,907,684	+				-2.0
1,907,684	+				+1.2
1,907,684	+				-0.6
1,907,684	+				-0.5
1,907,684	+				-0.2
1,907,685	-				-0.0
1,907,685	-				-1.9
1,907,685	-				-2.3
1,907,734	+				+0.7
1,907,734	+				-1.2
1,907,734	+				+3.0
1,907,735	-				+0.5
1,907,735	-				+0.2
1,907,803	+				+0.1
1,907,803	+				+1.2
1,907,804	-				+1.7
1,907,807	+				+1.0
1,907,807	+				-0.7
1,907,807	+				-0.7
1,907,807	+				+0.6
1,907,807	+				+0.2
1,907,808	-				-0.2
1,907,808	-				-3.2
1,907,808	-				-0.8
1,907,808	-				-1.9
1,907,808	-				-1.4
1,907,808	-				-2.4
1,907,808	-				-1.2
1,907,808	-				+0.4
1,907,808	-				+1.4
1,907,826	+				-1.1
1,907,826	+				+1.0
1,907,826	+				-0.3
1,907,827	-				-0.1
1,907,827	-				-1.5
1,907,827	-				-0.0
1,907,827	-				+1.1
1,907,827	-				+1.1
1,907,827	-				-0.6
1,907,832	+				-3.7
1,907,833	-				+2.0
1,907,900	+				+0.6
1,907,901	-				+0.4
1,907,901	-				+0.1
1,907,901	-				-1.0
1,908,007	+				-1.5
1,908,008	-				+3.1
1,908,008	-				+0.9
1,908,008	-				+0.2
1,908,008	-				-0.6
1,908,008	-				+1.0
1,908,008	-				-0.9
1,908,008	-				+0.0
1,908,376	-				-1.0
1,908,433	-		RPSI07_RS16625	0.15	+3.0
1,908,433	-		RPSI07_RS16625	0.15	-1.4
1,908,490	-		RPSI07_RS16625	0.22	-0.6
1,908,554	-		RPSI07_RS16625	0.29	+1.4
1,908,613	+		RPSI07_RS16625	0.35	+1.0
1,908,635	+		RPSI07_RS16625	0.38	+1.0
1,908,635	+		RPSI07_RS16625	0.38	-0.9
1,908,637	-		RPSI07_RS16625	0.38	-0.0
1,908,697	+		RPSI07_RS16625	0.44	+2.5
1,908,697	+		RPSI07_RS16625	0.44	-1.6
1,908,697	+		RPSI07_RS16625	0.44	-0.9
1,908,697	+		RPSI07_RS16625	0.44	-0.4
1,908,697	+		RPSI07_RS16625	0.44	-0.4
1,908,697	+		RPSI07_RS16625	0.44	-0.0
1,908,697	+		RPSI07_RS16625	0.44	+0.6
1,908,697	+		RPSI07_RS16625	0.44	+0.4
1,908,697	+		RPSI07_RS16625	0.44	-0.5
1,908,697	+		RPSI07_RS16625	0.44	-0.5
1,908,697	+		RPSI07_RS16625	0.44	+1.5
1,908,697	+		RPSI07_RS16625	0.44	-1.6
1,908,698	-		RPSI07_RS16625	0.45	+3.3
1,908,698	-		RPSI07_RS16625	0.45	-1.0
1,908,698	-		RPSI07_RS16625	0.45	+0.6
1,908,698	-		RPSI07_RS16625	0.45	+0.5
1,908,698	-		RPSI07_RS16625	0.45	-0.7
1,908,698	-		RPSI07_RS16625	0.45	-2.9
1,908,698	-		RPSI07_RS16625	0.45	-1.6
1,908,704	-		RPSI07_RS16625	0.45	-0.0