Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03565

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03560 and RPSI07_RS03565 are separated by 150 nucleotidesRPSI07_RS03565 and RPSI07_RS03570 are separated by 181 nucleotides RPSI07_RS03560: RPSI07_RS03560 - hypothetical protein, at 966,392 to 970,312 _RS03560 RPSI07_RS03565: RPSI07_RS03565 - hypothetical protein, at 970,463 to 974,269 _RS03565 RPSI07_RS03570: RPSI07_RS03570 - hypothetical protein, at 974,451 to 978,476 _RS03570 Position (kb) 970 971 972 973 974 975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 969.483 kb on + strand, within RPSI07_RS03560at 969.484 kb on - strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.561 kb on + strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 969.562 kb on - strand, within RPSI07_RS03560at 970.300 kb on + strandat 970.300 kb on + strandat 970.300 kb on + strandat 970.301 kb on - strandat 970.301 kb on - strandat 970.348 kb on + strandat 970.349 kb on - strandat 970.385 kb on - strandat 970.464 kb on + strandat 970.480 kb on + strandat 971.076 kb on + strand, within RPSI07_RS03565at 971.077 kb on - strand, within RPSI07_RS03565at 971.119 kb on - strand, within RPSI07_RS03565at 971.131 kb on - strand, within RPSI07_RS03565at 971.217 kb on + strand, within RPSI07_RS03565at 971.218 kb on - strand, within RPSI07_RS03565at 971.218 kb on - strand, within RPSI07_RS03565at 971.235 kb on + strand, within RPSI07_RS03565at 971.235 kb on + strand, within RPSI07_RS03565at 971.235 kb on + strand, within RPSI07_RS03565at 971.236 kb on - strand, within RPSI07_RS03565at 971.236 kb on - strand, within RPSI07_RS03565at 971.236 kb on - strand, within RPSI07_RS03565at 971.250 kb on + strand, within RPSI07_RS03565at 971.251 kb on - strand, within RPSI07_RS03565at 971.334 kb on + strand, within RPSI07_RS03565at 971.335 kb on - strand, within RPSI07_RS03565at 971.335 kb on - strand, within RPSI07_RS03565at 971.335 kb on - strand, within RPSI07_RS03565at 971.440 kb on + strand, within RPSI07_RS03565at 971.441 kb on - strand, within RPSI07_RS03565at 971.441 kb on - strand, within RPSI07_RS03565at 971.442 kb on + strand, within RPSI07_RS03565at 971.442 kb on + strand, within RPSI07_RS03565at 971.442 kb on + strand, within RPSI07_RS03565at 971.442 kb on + strand, within RPSI07_RS03565at 971.443 kb on - strand, within RPSI07_RS03565at 971.443 kb on - strand, within RPSI07_RS03565at 971.443 kb on - strand, within RPSI07_RS03565at 971.443 kb on - strand, within RPSI07_RS03565at 971.463 kb on + strand, within RPSI07_RS03565at 971.464 kb on - strand, within RPSI07_RS03565at 971.464 kb on - strand, within RPSI07_RS03565at 971.499 kb on + strand, within RPSI07_RS03565at 971.500 kb on - strand, within RPSI07_RS03565at 971.500 kb on - strand, within RPSI07_RS03565at 971.500 kb on - strand, within RPSI07_RS03565at 971.511 kb on + strand, within RPSI07_RS03565at 971.512 kb on - strand, within RPSI07_RS03565at 971.512 kb on - strand, within RPSI07_RS03565at 971.848 kb on - strand, within RPSI07_RS03565at 971.848 kb on - strand, within RPSI07_RS03565at 971.848 kb on - strand, within RPSI07_RS03565at 971.871 kb on + strand, within RPSI07_RS03565at 971.871 kb on + strand, within RPSI07_RS03565at 971.871 kb on + strand, within RPSI07_RS03565at 971.910 kb on + strand, within RPSI07_RS03565at 971.910 kb on + strand, within RPSI07_RS03565at 971.910 kb on + strand, within RPSI07_RS03565at 971.911 kb on - strand, within RPSI07_RS03565at 972.007 kb on - strand, within RPSI07_RS03565at 972.192 kb on - strand, within RPSI07_RS03565at 972.432 kb on + strand, within RPSI07_RS03565at 972.432 kb on + strand, within RPSI07_RS03565at 972.432 kb on + strand, within RPSI07_RS03565at 972.432 kb on + strand, within RPSI07_RS03565at 972.432 kb on + strand, within RPSI07_RS03565at 972.433 kb on - strand, within RPSI07_RS03565at 972.433 kb on - strand, within RPSI07_RS03565at 972.433 kb on - strand, within RPSI07_RS03565at 972.611 kb on + strand, within RPSI07_RS03565at 972.611 kb on + strand, within RPSI07_RS03565at 972.612 kb on - strand, within RPSI07_RS03565at 972.612 kb on - strand, within RPSI07_RS03565at 972.666 kb on + strand, within RPSI07_RS03565at 972.666 kb on + strand, within RPSI07_RS03565at 972.667 kb on - strand, within RPSI07_RS03565at 972.667 kb on - strand, within RPSI07_RS03565at 972.667 kb on - strandat 972.667 kb on - strand, within RPSI07_RS03565at 972.846 kb on + strand, within RPSI07_RS03565at 972.846 kb on + strand, within RPSI07_RS03565at 972.846 kb on + strand, within RPSI07_RS03565at 972.847 kb on - strand, within RPSI07_RS03565at 973.327 kb on - strand, within RPSI07_RS03565at 973.695 kb on + strand, within RPSI07_RS03565at 973.818 kb on + strand, within RPSI07_RS03565at 973.818 kb on + strand, within RPSI07_RS03565at 973.819 kb on - strand, within RPSI07_RS03565at 973.819 kb on - strand, within RPSI07_RS03565at 974.067 kb on + strandat 974.067 kb on + strandat 974.067 kb on + strandat 974.068 kb on - strandat 974.068 kb on - strandat 974.068 kb on - strandat 974.298 kb on - strandat 974.322 kb on + strandat 974.322 kb on + strandat 974.323 kb on - strandat 974.323 kb on - strandat 974.323 kb on - strandat 974.323 kb on - strandat 974.403 kb on + strandat 974.404 kb on - strandat 974.432 kb on + strandat 974.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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969,483 + RPSI07_RS03560 0.79 -0.1
969,484 - RPSI07_RS03560 0.79 -0.9
969,561 + RPSI07_RS03560 0.81 +0.8
969,561 + RPSI07_RS03560 0.81 +0.7
969,561 + RPSI07_RS03560 0.81 +0.3
969,561 + RPSI07_RS03560 0.81 +0.0
969,561 + RPSI07_RS03560 0.81 -0.3
969,561 + RPSI07_RS03560 0.81 +0.5
969,561 + RPSI07_RS03560 0.81 -0.2
969,562 - RPSI07_RS03560 0.81 -0.9
969,562 - RPSI07_RS03560 0.81 +0.1
969,562 - RPSI07_RS03560 0.81 +1.1
969,562 - RPSI07_RS03560 0.81 +1.4
969,562 - RPSI07_RS03560 0.81 -1.9
969,562 - RPSI07_RS03560 0.81 -2.9
969,562 - RPSI07_RS03560 0.81 -1.8
969,562 - RPSI07_RS03560 0.81 -1.3
969,562 - RPSI07_RS03560 0.81 +0.7
970,300 + -1.3
970,300 + -0.0
970,300 + -0.9
970,301 - +1.7
970,301 - -0.1
970,348 + -0.8
970,349 - +0.4
970,385 - +0.2
970,464 + -0.9
970,480 + +1.6
971,076 + RPSI07_RS03565 0.16 +3.0
971,077 - RPSI07_RS03565 0.16 -0.1
971,119 - RPSI07_RS03565 0.17 +0.1
971,131 - RPSI07_RS03565 0.18 -0.7
971,217 + RPSI07_RS03565 0.20 +0.2
971,218 - RPSI07_RS03565 0.20 -0.1
971,218 - RPSI07_RS03565 0.20 -0.6
971,235 + RPSI07_RS03565 0.20 +3.1
971,235 + RPSI07_RS03565 0.20 -1.0
971,235 + RPSI07_RS03565 0.20 +2.1
971,236 - RPSI07_RS03565 0.20 -1.3
971,236 - RPSI07_RS03565 0.20 -0.7
971,236 - RPSI07_RS03565 0.20 -0.6
971,250 + RPSI07_RS03565 0.21 -3.3
971,251 - RPSI07_RS03565 0.21 +0.0
971,334 + RPSI07_RS03565 0.23 -0.6
971,335 - RPSI07_RS03565 0.23 -1.6
971,335 - RPSI07_RS03565 0.23 -0.2
971,335 - RPSI07_RS03565 0.23 +0.6
971,440 + RPSI07_RS03565 0.26 +0.7
971,441 - RPSI07_RS03565 0.26 -2.2
971,441 - RPSI07_RS03565 0.26 -1.0
971,442 + RPSI07_RS03565 0.26 -1.0
971,442 + RPSI07_RS03565 0.26 -1.2
971,442 + RPSI07_RS03565 0.26 +2.3
971,442 + RPSI07_RS03565 0.26 -2.1
971,443 - RPSI07_RS03565 0.26 +0.2
971,443 - RPSI07_RS03565 0.26 -1.8
971,443 - RPSI07_RS03565 0.26 +0.1
971,443 - RPSI07_RS03565 0.26 -0.1
971,463 + RPSI07_RS03565 0.26 +0.2
971,464 - RPSI07_RS03565 0.26 -2.4
971,464 - RPSI07_RS03565 0.26 -0.4
971,499 + RPSI07_RS03565 0.27 -0.7
971,500 - RPSI07_RS03565 0.27 -0.1
971,500 - RPSI07_RS03565 0.27 -0.7
971,500 - RPSI07_RS03565 0.27 -2.3
971,511 + RPSI07_RS03565 0.28 -0.8
971,512 - RPSI07_RS03565 0.28 -0.2
971,512 - RPSI07_RS03565 0.28 +1.3
971,848 - RPSI07_RS03565 0.36 +0.5
971,848 - RPSI07_RS03565 0.36 -0.5
971,848 - RPSI07_RS03565 0.36 -0.6
971,871 + RPSI07_RS03565 0.37 -1.6
971,871 + RPSI07_RS03565 0.37 +2.5
971,871 + RPSI07_RS03565 0.37 -0.9
971,910 + RPSI07_RS03565 0.38 -1.2
971,910 + RPSI07_RS03565 0.38 -1.3
971,910 + RPSI07_RS03565 0.38 +0.7
971,911 - RPSI07_RS03565 0.38 +1.1
972,007 - RPSI07_RS03565 0.41 -2.3
972,192 - RPSI07_RS03565 0.45 +0.4
972,432 + RPSI07_RS03565 0.52 +1.7
972,432 + RPSI07_RS03565 0.52 +0.9
972,432 + RPSI07_RS03565 0.52 +1.7
972,432 + RPSI07_RS03565 0.52 +2.1
972,432 + RPSI07_RS03565 0.52 +0.5
972,433 - RPSI07_RS03565 0.52 -1.6
972,433 - RPSI07_RS03565 0.52 +0.7
972,433 - RPSI07_RS03565 0.52 -1.3
972,611 + RPSI07_RS03565 0.56 +1.7
972,611 + RPSI07_RS03565 0.56 -1.3
972,612 - RPSI07_RS03565 0.56 +0.5
972,612 - RPSI07_RS03565 0.56 +0.6
972,666 + RPSI07_RS03565 0.58 +0.7
972,666 + RPSI07_RS03565 0.58 -0.8
972,667 - RPSI07_RS03565 0.58 -0.1
972,667 - RPSI07_RS03565 0.58 -1.3
972,667 - +0.7
972,667 - RPSI07_RS03565 0.58 -0.4
972,846 + RPSI07_RS03565 0.63 -1.8
972,846 + RPSI07_RS03565 0.63 +1.6
972,846 + RPSI07_RS03565 0.63 -0.4
972,847 - RPSI07_RS03565 0.63 +1.5
973,327 - RPSI07_RS03565 0.75 +0.3
973,695 + RPSI07_RS03565 0.85 +0.0
973,818 + RPSI07_RS03565 0.88 +1.7
973,818 + RPSI07_RS03565 0.88 +0.5
973,819 - RPSI07_RS03565 0.88 -0.5
973,819 - RPSI07_RS03565 0.88 -0.4
974,067 + -0.9
974,067 + +1.5
974,067 + -1.1
974,068 - +0.0
974,068 - -1.9
974,068 - -0.9
974,298 - +1.0
974,322 + -1.3
974,322 + +0.1
974,323 - -0.4
974,323 - -1.6
974,323 - +0.9
974,323 - -0.8
974,403 + -0.9
974,404 - -0.9
974,432 + -0.9
974,453 - +0.5

Or see this region's nucleotide sequence