Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS01100

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS01090 and RPSI07_RS24185 are separated by 33 nucleotidesRPSI07_RS24185 and RPSI07_RS01095 overlap by 49 nucleotidesRPSI07_RS01095 and RPSI07_RS01100 are separated by 233 nucleotidesRPSI07_RS01100 and RPSI07_RS01105 are separated by 119 nucleotides RPSI07_RS01090: RPSI07_RS01090 - IS5/IS1182 family transposase, at 301,684 to 302,426 _RS01090 RPSI07_RS24185: RPSI07_RS24185 - hypothetical protein, at 302,460 to 302,639 _RS24185 RPSI07_RS01095: RPSI07_RS01095 - tRNA-Leu, at 302,591 to 302,675 _RS01095 RPSI07_RS01100: RPSI07_RS01100 - gamma-glutamyltransferase, at 302,909 to 304,627 _RS01100 RPSI07_RS01105: RPSI07_RS01105 - membrane protein, at 304,747 to 305,904 _RS01105 Position (kb) 302 303 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 302.153 kb on + strand, within RPSI07_RS01090at 302.153 kb on + strand, within RPSI07_RS01090at 302.154 kb on - strand, within RPSI07_RS01090at 302.154 kb on - strand, within RPSI07_RS01090at 302.154 kb on - strand, within RPSI07_RS01090at 302.184 kb on + strand, within RPSI07_RS01090at 302.185 kb on - strand, within RPSI07_RS01090at 302.289 kb on + strand, within RPSI07_RS01090at 302.351 kb on + strand, within RPSI07_RS01090at 302.358 kb on + strandat 302.358 kb on + strandat 302.359 kb on - strandat 302.443 kb on + strandat 302.444 kb on - strandat 302.444 kb on - strandat 302.533 kb on + strand, within RPSI07_RS24185at 302.589 kb on - strand, within RPSI07_RS24185at 302.627 kb on - strandat 302.634 kb on - strandat 302.637 kb on - strandat 302.655 kb on + strand, within RPSI07_RS01095at 302.695 kb on - strandat 302.862 kb on + strandat 302.862 kb on + strandat 302.862 kb on + strandat 302.862 kb on + strandat 302.862 kb on + strandat 302.862 kb on + strandat 302.863 kb on - strandat 302.863 kb on - strandat 302.863 kb on - strandat 302.863 kb on - strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.929 kb on + strandat 302.930 kb on - strandat 302.930 kb on - strandat 302.930 kb on - strandat 302.930 kb on - strandat 302.930 kb on - strandat 302.930 kb on - strandat 303.101 kb on + strand, within RPSI07_RS01100at 303.101 kb on + strand, within RPSI07_RS01100at 303.101 kb on + strand, within RPSI07_RS01100at 303.119 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.236 kb on + strand, within RPSI07_RS01100at 303.237 kb on - strand, within RPSI07_RS01100at 303.237 kb on - strand, within RPSI07_RS01100at 303.237 kb on - strand, within RPSI07_RS01100at 303.237 kb on - strand, within RPSI07_RS01100at 303.326 kb on + strand, within RPSI07_RS01100at 303.326 kb on + strand, within RPSI07_RS01100at 303.326 kb on + strand, within RPSI07_RS01100at 303.327 kb on - strand, within RPSI07_RS01100at 303.327 kb on - strand, within RPSI07_RS01100at 303.341 kb on + strand, within RPSI07_RS01100at 303.341 kb on + strand, within RPSI07_RS01100at 303.341 kb on + strand, within RPSI07_RS01100at 303.341 kb on + strand, within RPSI07_RS01100at 303.341 kb on + strand, within RPSI07_RS01100at 303.342 kb on - strand, within RPSI07_RS01100at 303.342 kb on - strand, within RPSI07_RS01100at 303.342 kb on - strand, within RPSI07_RS01100at 303.504 kb on - strand, within RPSI07_RS01100at 303.584 kb on + strand, within RPSI07_RS01100at 303.584 kb on + strandat 303.584 kb on + strand, within RPSI07_RS01100at 303.585 kb on - strand, within RPSI07_RS01100at 303.585 kb on - strand, within RPSI07_RS01100at 303.585 kb on - strand, within RPSI07_RS01100at 303.585 kb on - strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.665 kb on + strand, within RPSI07_RS01100at 303.666 kb on - strand, within RPSI07_RS01100at 303.666 kb on - strand, within RPSI07_RS01100at 303.666 kb on - strand, within RPSI07_RS01100at 303.701 kb on + strand, within RPSI07_RS01100at 303.701 kb on + strand, within RPSI07_RS01100at 303.711 kb on - strand, within RPSI07_RS01100at 303.786 kb on - strand, within RPSI07_RS01100at 303.806 kb on + strand, within RPSI07_RS01100at 303.807 kb on - strand, within RPSI07_RS01100at 303.830 kb on + strand, within RPSI07_RS01100at 303.830 kb on + strand, within RPSI07_RS01100at 303.831 kb on - strand, within RPSI07_RS01100at 303.857 kb on + strand, within RPSI07_RS01100at 303.857 kb on + strand, within RPSI07_RS01100at 303.857 kb on + strand, within RPSI07_RS01100at 303.858 kb on - strand, within RPSI07_RS01100at 303.858 kb on - strand, within RPSI07_RS01100at 303.858 kb on - strand, within RPSI07_RS01100at 303.875 kb on + strand, within RPSI07_RS01100at 303.875 kb on + strand, within RPSI07_RS01100at 303.875 kb on + strand, within RPSI07_RS01100at 303.875 kb on + strand, within RPSI07_RS01100at 303.875 kb on + strand, within RPSI07_RS01100at 303.876 kb on - strandat 303.876 kb on - strand, within RPSI07_RS01100at 303.876 kb on - strand, within RPSI07_RS01100at 303.876 kb on - strand, within RPSI07_RS01100at 303.876 kb on - strand, within RPSI07_RS01100at 303.876 kb on - strand, within RPSI07_RS01100at 303.932 kb on + strand, within RPSI07_RS01100at 303.932 kb on + strand, within RPSI07_RS01100at 303.932 kb on + strand, within RPSI07_RS01100at 303.932 kb on + strand, within RPSI07_RS01100at 303.933 kb on - strand, within RPSI07_RS01100at 303.933 kb on - strand, within RPSI07_RS01100at 303.933 kb on - strand, within RPSI07_RS01100at 303.933 kb on - strand, within RPSI07_RS01100at 304.034 kb on + strand, within RPSI07_RS01100at 304.034 kb on + strand, within RPSI07_RS01100at 304.034 kb on + strand, within RPSI07_RS01100at 304.034 kb on + strand, within RPSI07_RS01100at 304.035 kb on - strand, within RPSI07_RS01100at 304.052 kb on + strand, within RPSI07_RS01100at 304.052 kb on + strand, within RPSI07_RS01100at 304.053 kb on - strand, within RPSI07_RS01100at 304.053 kb on - strandat 304.054 kb on - strand, within RPSI07_RS01100at 304.076 kb on + strand, within RPSI07_RS01100at 304.076 kb on + strand, within RPSI07_RS01100at 304.076 kb on + strand, within RPSI07_RS01100at 304.077 kb on - strand, within RPSI07_RS01100at 304.077 kb on - strand, within RPSI07_RS01100at 304.077 kb on - strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.184 kb on + strand, within RPSI07_RS01100at 304.185 kb on - strand, within RPSI07_RS01100at 304.185 kb on - strand, within RPSI07_RS01100at 304.185 kb on - strand, within RPSI07_RS01100at 304.355 kb on + strand, within RPSI07_RS01100at 304.384 kb on + strand, within RPSI07_RS01100at 304.385 kb on - strand, within RPSI07_RS01100at 304.385 kb on - strand, within RPSI07_RS01100at 304.385 kb on - strand, within RPSI07_RS01100at 304.436 kb on + strand, within RPSI07_RS01100at 304.437 kb on - strand, within RPSI07_RS01100at 304.437 kb on - strand, within RPSI07_RS01100at 304.437 kb on - strand, within RPSI07_RS01100at 304.437 kb on - strand, within RPSI07_RS01100at 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.578 kb on + strandat 304.578 kb on - strandat 304.578 kb on - strandat 304.578 kb on - strandat 304.603 kb on + strandat 304.604 kb on - strandat 304.604 kb on - strandat 304.604 kb on - strandat 304.623 kb on - strandat 304.763 kb on + strandat 304.763 kb on + strandat 304.763 kb on + strandat 304.763 kb on + strandat 304.764 kb on - strandat 304.764 kb on - strandat 304.778 kb on + strandat 304.778 kb on + strandat 304.779 kb on - strandat 304.779 kb on - strandat 304.853 kb on + strandat 304.854 kb on - strandat 304.854 kb on - strandat 304.922 kb on + strand, within RPSI07_RS01105at 304.923 kb on - strand, within RPSI07_RS01105at 304.923 kb on - strand, within RPSI07_RS01105at 304.923 kb on - strand, within RPSI07_RS01105at 305.021 kb on + strand, within RPSI07_RS01105at 305.033 kb on + strand, within RPSI07_RS01105at 305.033 kb on + strand, within RPSI07_RS01105at 305.034 kb on - strand, within RPSI07_RS01105at 305.034 kb on - strand, within RPSI07_RS01105at 305.034 kb on - strand, within RPSI07_RS01105at 305.034 kb on - strand, within RPSI07_RS01105at 305.168 kb on + strand, within RPSI07_RS01105at 305.168 kb on + strand, within RPSI07_RS01105at 305.169 kb on - strand, within RPSI07_RS01105at 305.169 kb on - strand, within RPSI07_RS01105at 305.169 kb on - strand, within RPSI07_RS01105at 305.169 kb on - strand, within RPSI07_RS01105at 305.169 kb on - strand, within RPSI07_RS01105at 305.190 kb on - strand, within RPSI07_RS01105at 305.190 kb on - strand, within RPSI07_RS01105at 305.246 kb on + strand, within RPSI07_RS01105at 305.246 kb on + strand, within RPSI07_RS01105at 305.247 kb on - strand, within RPSI07_RS01105at 305.492 kb on + strand, within RPSI07_RS01105at 305.492 kb on + strand, within RPSI07_RS01105at 305.492 kb on + strand, within RPSI07_RS01105at 305.492 kb on + strandat 305.493 kb on - strand, within RPSI07_RS01105at 305.493 kb on - strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.496 kb on + strand, within RPSI07_RS01105at 305.497 kb on - strand, within RPSI07_RS01105at 305.497 kb on - strand, within RPSI07_RS01105at 305.497 kb on - strand, within RPSI07_RS01105

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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302,153 + RPSI07_RS01090 0.63 +1.3
302,153 + RPSI07_RS01090 0.63 -0.1
302,154 - RPSI07_RS01090 0.63 -0.8
302,154 - RPSI07_RS01090 0.63 +0.3
302,154 - RPSI07_RS01090 0.63 -2.5
302,184 + RPSI07_RS01090 0.67 +0.8
302,185 - RPSI07_RS01090 0.67 -0.1
302,289 + RPSI07_RS01090 0.81 -1.6
302,351 + RPSI07_RS01090 0.90 -0.3
302,358 + -0.2
302,358 + -0.2
302,359 - -0.1
302,443 + +0.1
302,444 - +0.4
302,444 - +0.1
302,533 + RPSI07_RS24185 0.41 -0.2
302,589 - RPSI07_RS24185 0.72 +0.1
302,627 - -1.8
302,634 - -0.5
302,637 - -1.9
302,655 + RPSI07_RS01095 0.75 +3.6
302,695 - -0.0
302,862 + +0.7
302,862 + +0.5
302,862 + +0.2
302,862 + +0.4
302,862 + +0.6
302,862 + +0.8
302,863 - -1.2
302,863 - +0.2
302,863 - -1.3
302,863 - -0.6
302,929 + -0.6
302,929 + +5.3
302,929 + +2.8
302,929 + -0.5
302,929 + +0.1
302,929 + +0.4
302,929 + +0.5
302,929 + +0.3
302,930 - +1.5
302,930 - -1.0
302,930 - -1.8
302,930 - +0.8
302,930 - -0.5
302,930 - -0.4
303,101 + RPSI07_RS01100 0.11 -0.5
303,101 + RPSI07_RS01100 0.11 +0.8
303,101 + RPSI07_RS01100 0.11 +2.4
303,119 + RPSI07_RS01100 0.12 -0.5
303,236 + RPSI07_RS01100 0.19 -0.2
303,236 + RPSI07_RS01100 0.19 -1.5
303,236 + RPSI07_RS01100 0.19 +2.5
303,236 + RPSI07_RS01100 0.19 -0.8
303,236 + RPSI07_RS01100 0.19 +1.1
303,236 + RPSI07_RS01100 0.19 -0.3
303,236 + RPSI07_RS01100 0.19 -2.2
303,236 + RPSI07_RS01100 0.19 +0.8
303,237 - RPSI07_RS01100 0.19 -2.5
303,237 - RPSI07_RS01100 0.19 -1.7
303,237 - RPSI07_RS01100 0.19 -0.8
303,237 - RPSI07_RS01100 0.19 -0.5
303,326 + RPSI07_RS01100 0.24 -0.3
303,326 + RPSI07_RS01100 0.24 -3.8
303,326 + RPSI07_RS01100 0.24 +0.5
303,327 - RPSI07_RS01100 0.24 -0.3
303,327 - RPSI07_RS01100 0.24 +1.0
303,341 + RPSI07_RS01100 0.25 -1.3
303,341 + RPSI07_RS01100 0.25 +1.1
303,341 + RPSI07_RS01100 0.25 +1.3
303,341 + RPSI07_RS01100 0.25 +0.1
303,341 + RPSI07_RS01100 0.25 +0.1
303,342 - RPSI07_RS01100 0.25 -0.1
303,342 - RPSI07_RS01100 0.25 +0.1
303,342 - RPSI07_RS01100 0.25 -0.3
303,504 - RPSI07_RS01100 0.35 +0.2
303,584 + RPSI07_RS01100 0.39 +0.1
303,584 + +1.8
303,584 + RPSI07_RS01100 0.39 +0.4
303,585 - RPSI07_RS01100 0.39 +0.8
303,585 - RPSI07_RS01100 0.39 -1.9
303,585 - RPSI07_RS01100 0.39 +1.5
303,585 - RPSI07_RS01100 0.39 -0.4
303,665 + RPSI07_RS01100 0.44 +1.3
303,665 + RPSI07_RS01100 0.44 +2.0
303,665 + RPSI07_RS01100 0.44 +1.1
303,665 + RPSI07_RS01100 0.44 +0.3
303,665 + RPSI07_RS01100 0.44 -1.6
303,665 + RPSI07_RS01100 0.44 -3.8
303,665 + RPSI07_RS01100 0.44 -1.1
303,666 - RPSI07_RS01100 0.44 +0.8
303,666 - RPSI07_RS01100 0.44 +1.2
303,666 - RPSI07_RS01100 0.44 +1.4
303,701 + RPSI07_RS01100 0.46 +1.3
303,701 + RPSI07_RS01100 0.46 -2.9
303,711 - RPSI07_RS01100 0.47 -0.9
303,786 - RPSI07_RS01100 0.51 +0.6
303,806 + RPSI07_RS01100 0.52 -0.0
303,807 - RPSI07_RS01100 0.52 -1.3
303,830 + RPSI07_RS01100 0.54 -2.1
303,830 + RPSI07_RS01100 0.54 +1.2
303,831 - RPSI07_RS01100 0.54 -0.6
303,857 + RPSI07_RS01100 0.55 -1.4
303,857 + RPSI07_RS01100 0.55 +0.7
303,857 + RPSI07_RS01100 0.55 -0.0
303,858 - RPSI07_RS01100 0.55 -0.5
303,858 - RPSI07_RS01100 0.55 -0.8
303,858 - RPSI07_RS01100 0.55 -0.2
303,875 + RPSI07_RS01100 0.56 +1.4
303,875 + RPSI07_RS01100 0.56 +0.8
303,875 + RPSI07_RS01100 0.56 +0.8
303,875 + RPSI07_RS01100 0.56 -1.2
303,875 + RPSI07_RS01100 0.56 +2.8
303,876 - +1.8
303,876 - RPSI07_RS01100 0.56 +0.6
303,876 - RPSI07_RS01100 0.56 +0.0
303,876 - RPSI07_RS01100 0.56 -0.3
303,876 - RPSI07_RS01100 0.56 +4.0
303,876 - RPSI07_RS01100 0.56 -3.9
303,932 + RPSI07_RS01100 0.60 -0.1
303,932 + RPSI07_RS01100 0.60 -1.6
303,932 + RPSI07_RS01100 0.60 -0.1
303,932 + RPSI07_RS01100 0.60 -0.3
303,933 - RPSI07_RS01100 0.60 -0.4
303,933 - RPSI07_RS01100 0.60 -0.9
303,933 - RPSI07_RS01100 0.60 -0.4
303,933 - RPSI07_RS01100 0.60 -1.4
304,034 + RPSI07_RS01100 0.65 +0.8
304,034 + RPSI07_RS01100 0.65 -1.1
304,034 + RPSI07_RS01100 0.65 +0.8
304,034 + RPSI07_RS01100 0.65 +0.8
304,035 - RPSI07_RS01100 0.66 +1.6
304,052 + RPSI07_RS01100 0.66 -0.1
304,052 + RPSI07_RS01100 0.66 -2.5
304,053 - RPSI07_RS01100 0.67 +0.2
304,053 - -2.4
304,054 - RPSI07_RS01100 0.67 -0.4
304,076 + RPSI07_RS01100 0.68 -0.2
304,076 + RPSI07_RS01100 0.68 +0.1
304,076 + RPSI07_RS01100 0.68 -0.2
304,077 - RPSI07_RS01100 0.68 -2.2
304,077 - RPSI07_RS01100 0.68 -0.4
304,077 - RPSI07_RS01100 0.68 +1.6
304,184 + RPSI07_RS01100 0.74 -1.2
304,184 + RPSI07_RS01100 0.74 -2.6
304,184 + RPSI07_RS01100 0.74 -0.2
304,184 + RPSI07_RS01100 0.74 -0.7
304,184 + RPSI07_RS01100 0.74 +2.3
304,184 + RPSI07_RS01100 0.74 -1.0
304,184 + RPSI07_RS01100 0.74 +0.7
304,185 - RPSI07_RS01100 0.74 +2.0
304,185 - RPSI07_RS01100 0.74 +0.8
304,185 - RPSI07_RS01100 0.74 -0.6
304,355 + RPSI07_RS01100 0.84 -2.0
304,384 + RPSI07_RS01100 0.86 -2.8
304,385 - RPSI07_RS01100 0.86 +0.4
304,385 - RPSI07_RS01100 0.86 +0.3
304,385 - RPSI07_RS01100 0.86 -0.5
304,436 + RPSI07_RS01100 0.89 -0.7
304,437 - RPSI07_RS01100 0.89 +0.2
304,437 - RPSI07_RS01100 0.89 +0.7
304,437 - RPSI07_RS01100 0.89 +1.6
304,437 - RPSI07_RS01100 0.89 +0.2
304,577 + +0.4
304,577 + +0.2
304,577 + -1.9
304,577 + -0.6
304,577 + -0.5
304,578 + +0.3
304,578 - -1.0
304,578 - +0.8
304,578 - +1.6
304,603 + +0.2
304,604 - -2.0
304,604 - -4.0
304,604 - +1.8
304,623 - -0.8
304,763 + -0.1
304,763 + -0.5
304,763 + +0.5
304,763 + -0.7
304,764 - -1.8
304,764 - +0.4
304,778 + +1.6
304,778 + -0.3
304,779 - -1.1
304,779 - -0.4
304,853 + +0.2
304,854 - +0.8
304,854 - -0.2
304,922 + RPSI07_RS01105 0.15 -0.2
304,923 - RPSI07_RS01105 0.15 -0.6
304,923 - RPSI07_RS01105 0.15 -0.8
304,923 - RPSI07_RS01105 0.15 +0.3
305,021 + RPSI07_RS01105 0.24 +0.9
305,033 + RPSI07_RS01105 0.25 +2.6
305,033 + RPSI07_RS01105 0.25 -0.6
305,034 - RPSI07_RS01105 0.25 -0.6
305,034 - RPSI07_RS01105 0.25 +0.2
305,034 - RPSI07_RS01105 0.25 +0.4
305,034 - RPSI07_RS01105 0.25 +1.3
305,168 + RPSI07_RS01105 0.36 +1.2
305,168 + RPSI07_RS01105 0.36 -2.3
305,169 - RPSI07_RS01105 0.36 -0.6
305,169 - RPSI07_RS01105 0.36 -0.8
305,169 - RPSI07_RS01105 0.36 +0.6
305,169 - RPSI07_RS01105 0.36 +0.3
305,169 - RPSI07_RS01105 0.36 +0.8
305,190 - RPSI07_RS01105 0.38 +1.2
305,190 - RPSI07_RS01105 0.38 +0.1
305,246 + RPSI07_RS01105 0.43 -0.9
305,246 + RPSI07_RS01105 0.43 -0.8
305,247 - RPSI07_RS01105 0.43 +0.8
305,492 + RPSI07_RS01105 0.64 -0.8
305,492 + RPSI07_RS01105 0.64 -0.1
305,492 + RPSI07_RS01105 0.64 -1.4
305,492 + -1.2
305,493 - RPSI07_RS01105 0.64 -0.2
305,493 - RPSI07_RS01105 0.64 +1.2
305,496 + RPSI07_RS01105 0.65 -0.1
305,496 + RPSI07_RS01105 0.65 -2.1
305,496 + RPSI07_RS01105 0.65 +0.6
305,496 + RPSI07_RS01105 0.65 +3.1
305,496 + RPSI07_RS01105 0.65 +0.3
305,496 + RPSI07_RS01105 0.65 -0.6
305,496 + RPSI07_RS01105 0.65 +1.1
305,497 - RPSI07_RS01105 0.65 +0.2
305,497 - RPSI07_RS01105 0.65 -0.6
305,497 - RPSI07_RS01105 0.65 -0.9

Or see this region's nucleotide sequence