Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS23940

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
3,514,118	-				+0.1
3,514,118	-				-0.4
3,514,118	-				-1.1
3,514,118	-				-0.4
3,514,118	-				+0.4
3,514,135	+				+0.5
3,514,135	+				-0.2
3,514,135	+				-1.9
3,514,135	+				+2.2
3,514,136	-				+0.1
3,514,140	+				-1.5
3,514,183	+				-0.1
3,514,183	+				-1.3
3,514,183	+				+3.2
3,514,183	+				-0.3
3,514,184	-				-2.2
3,514,184	-				-0.4
3,514,185	+				+0.7
3,514,185	+				+2.2
3,514,185	+				-1.4
3,514,186	-				-1.4
3,514,186	-				-0.2
3,514,291	+				-0.2
3,514,291	+				-0.8
3,514,291	+				-1.4
3,514,292	-				+1.8
3,514,292	-				-2.7
3,514,292	-				+0.8
3,514,292	-				+0.3
3,514,292	-				-0.4
3,514,292	-				-0.4
3,514,292	-				+0.2
3,514,296	+				+0.4
3,514,296	+				-2.1
3,514,297	-				-1.2
3,514,486	+		RPSI07_RS23935	0.18	-0.3
3,514,576	+		RPSI07_RS23935	0.30	-1.6
3,514,576	+		RPSI07_RS23935	0.30	-0.2
3,514,576	+		RPSI07_RS23935	0.30	+3.2
3,514,584	+		RPSI07_RS23935	0.31	+0.7
3,514,584	+		RPSI07_RS23935	0.31	+0.3
3,514,584	+		RPSI07_RS23935	0.31	-1.0
3,514,584	+		RPSI07_RS23935	0.31	+1.2
3,514,584	+		RPSI07_RS23935	0.31	+1.5
3,514,584	+		RPSI07_RS23935	0.31	-0.8
3,514,584	+		RPSI07_RS23935	0.31	+0.6
3,514,585	-		RPSI07_RS23935	0.31	+2.5
3,514,585	-		RPSI07_RS23935	0.31	-0.5
3,514,585	-		RPSI07_RS23935	0.31	+0.0
3,514,585	-		RPSI07_RS23935	0.31	-1.9
3,514,585	-		RPSI07_RS23935	0.31	+1.1
3,514,585	-		RPSI07_RS23935	0.31	+0.2
3,514,585	-		RPSI07_RS23935	0.31	-2.0
3,514,585	-		RPSI07_RS23935	0.31	-0.9
3,514,585	-		RPSI07_RS23935	0.31	-0.1
3,514,632	+		RPSI07_RS23935	0.38	-3.2
3,514,632	+		RPSI07_RS23935	0.38	-0.4
3,514,632	+		RPSI07_RS23935	0.38	+1.2
3,514,632	+		RPSI07_RS23935	0.38	+1.2
3,514,632	+		RPSI07_RS23935	0.38	-0.5
3,514,632	+		RPSI07_RS23935	0.38	-1.1
3,514,632	+		RPSI07_RS23935	0.38	+0.5
3,514,632	+		RPSI07_RS23935	0.38	-0.6
3,514,632	+		RPSI07_RS23935	0.38	+0.4
3,514,632	+		RPSI07_RS23935	0.38	+1.2
3,514,633	-		RPSI07_RS23935	0.38	+1.9
3,514,633	-		RPSI07_RS23935	0.38	-0.0
3,514,633	-		RPSI07_RS23935	0.38	-0.4
3,514,636	-		RPSI07_RS23935	0.38	-2.4
3,514,684	+		RPSI07_RS23935	0.45	-1.4
3,514,845	+		RPSI07_RS23935	0.67	+3.8
3,514,845	+		RPSI07_RS23935	0.67	-1.3
3,514,845	+		RPSI07_RS23935	0.67	+1.2
3,514,845	+		RPSI07_RS23935	0.67	-0.5
3,514,845	+		RPSI07_RS23935	0.67	+1.9
3,514,846	-		RPSI07_RS23935	0.67	+0.9
3,514,846	-		RPSI07_RS23935	0.67	+0.2
3,514,846	-		RPSI07_RS23935	0.67	+0.2
3,514,846	-		RPSI07_RS23935	0.67	+0.8
3,514,846	-		RPSI07_RS23935	0.67	-2.3
3,514,846	-		RPSI07_RS23935	0.67	-2.2
3,514,854	+		RPSI07_RS23935	0.68	+1.5
3,514,854	+		RPSI07_RS23935	0.68	+0.2
3,514,854	+		RPSI07_RS23935	0.68	+0.6
3,514,854	+		RPSI07_RS23935	0.68	-3.0
3,514,854	+		RPSI07_RS23935	0.68	+1.2
3,514,854	+		RPSI07_RS23935	0.68	+0.1
3,514,855	-		RPSI07_RS23935	0.68	+3.2
3,514,855	-		RPSI07_RS23935	0.68	-1.4
3,514,855	-		RPSI07_RS23935	0.68	+0.5
3,514,855	-		RPSI07_RS23935	0.68	-2.1
3,514,855	-		RPSI07_RS23935	0.68	+0.4
3,514,927	-		RPSI07_RS23935	0.78	+2.9
3,514,938	+		RPSI07_RS23935	0.79	+0.9
3,514,938	+		RPSI07_RS23935	0.79	+1.0
3,514,938	+		RPSI07_RS23935	0.79	-1.5
3,514,938	+		RPSI07_RS23935	0.79	+0.4
3,514,938	+		RPSI07_RS23935	0.79	-0.2
3,514,938	+		RPSI07_RS23935	0.79	-1.9
3,514,939	-		RPSI07_RS23935	0.79	-1.0
3,514,939	-		RPSI07_RS23935	0.79	+1.2
3,514,939	-		RPSI07_RS23935	0.79	-0.6
3,514,939	-		RPSI07_RS23935	0.79	+1.2
3,514,939	-		RPSI07_RS23935	0.79	-1.6
3,514,939	-		RPSI07_RS23935	0.79	-1.8
3,514,964	+		RPSI07_RS23935	0.83	-1.5
3,514,964	+		RPSI07_RS23935	0.83	+0.3
3,514,964	+		RPSI07_RS23935	0.83	-1.7
3,514,964	+		RPSI07_RS23935	0.83	-1.5
3,514,964	+		RPSI07_RS23935	0.83	+0.0
3,514,964	+		RPSI07_RS23935	0.83	-0.3
3,514,965	-		RPSI07_RS23935	0.83	+0.8
3,514,965	-		RPSI07_RS23935	0.83	+0.6
3,514,965	-		RPSI07_RS23935	0.83	+0.5
3,514,965	-		RPSI07_RS23935	0.83	+1.6
3,514,965	-		RPSI07_RS23935	0.83	+0.4
3,515,071	+				-0.1
3,515,072	-				-1.3
3,515,175	-		RPSI07_RS23940	0.21	-0.4
3,515,223	+		RPSI07_RS23940	0.35	-0.5
3,515,223	+		RPSI07_RS23940	0.35	+1.6
3,515,223	+		RPSI07_RS23940	0.35	+3.8
3,515,223	+		RPSI07_RS23940	0.35	+3.1
3,515,223	+		RPSI07_RS23940	0.35	-0.2
3,515,223	+		RPSI07_RS23940	0.35	+0.3
3,515,223	+		RPSI07_RS23940	0.35	+1.1
3,515,223	+		RPSI07_RS23940	0.35	-1.3
3,515,224	-		RPSI07_RS23940	0.35	+0.4
3,515,224	-		RPSI07_RS23940	0.35	-0.2
3,515,224	-		RPSI07_RS23940	0.35	+0.5
3,515,269	+		RPSI07_RS23940	0.48	+0.2
3,515,328	+		RPSI07_RS23940	0.65	-3.7
3,515,328	+		RPSI07_RS23940	0.65	-0.3
3,515,328	+		RPSI07_RS23940	0.65	+0.6
3,515,328	+		RPSI07_RS23940	0.65	+0.0
3,515,328	+		RPSI07_RS23940	0.65	+2.0
3,515,328	+		RPSI07_RS23940	0.65	-0.2
3,515,329	-		RPSI07_RS23940	0.65	-0.2
3,515,329	-		RPSI07_RS23940	0.65	+0.6
3,515,329	-		RPSI07_RS23940	0.65	-0.8
3,515,329	-		RPSI07_RS23940	0.65	-1.0
3,515,329	-		RPSI07_RS23940	0.65	-0.5
3,515,364	+		RPSI07_RS23940	0.75	+0.6
3,515,365	-		RPSI07_RS23940	0.75	+1.0
3,515,420	+				+1.7
3,515,420	+				+0.4
3,515,420	+				+0.4
3,515,428	+				+0.2
3,515,428	+				+1.1
3,515,429	-				+0.8
3,515,450	+				-0.4
3,515,452	+				+1.5
3,515,452	+				+0.8
3,515,452	+				+4.7
3,515,452	+				+0.9
3,515,452	+				-1.0
3,515,452	+				-1.7
3,515,452	+				-0.4
3,515,452	+				+4.8
3,515,452	+				+0.7
3,515,452	+				+0.6
3,515,452	+				+1.9
3,515,453	-				+3.2
3,515,453	-				-1.0
3,515,453	-				-0.1
3,515,453	-				+1.0
3,515,453	-				-1.6
3,515,453	-				+2.2
3,515,454	+				+1.4
3,515,454	+				+1.9
3,515,454	+				+3.0
3,515,454	+				-0.1
3,515,454	+				+0.7
3,515,454	+				+0.0
3,515,454	+				-1.3
3,515,454	+				+0.7
3,515,454	+				+1.2
3,515,454	+				+2.2
3,515,454	+				+1.8
3,515,454	+				+0.4
3,515,454	+				+2.1
3,515,455	-				-0.1
3,515,455	-				-0.2
3,515,455	-				+0.1
3,515,455	-				+0.5
3,515,455	-				-0.8
3,515,455	-				-1.4
3,515,455	-				+0.8
3,515,455	-				+1.5
3,515,455	-				+0.9
3,515,455	-				+0.1
3,515,455	-				+2.8
3,515,456	-				-1.1
3,515,463	+				+1.2
3,515,464	-				-1.0
3,515,464	-				-0.3
3,515,496	+				+0.2
3,515,497	-				-0.8
3,515,515	+				-0.4
3,515,516	+				+1.9
3,515,516	+				-0.5
3,515,516	+				-0.1
3,515,517	-				-3.9
3,515,517	-				-1.9
3,515,517	-				-2.0
3,515,517	-				-2.7
3,515,517	-				-2.4
3,515,632	-				-1.6
3,515,645	+				-0.1
3,515,645	+				-0.2
3,515,691	+				-0.6
3,515,691	+				+0.6
3,515,691	+				+0.2
3,515,691	+				+0.2
3,515,691	+				-0.8
3,515,691	+				+2.2
3,515,692	-				+0.2
3,515,692	-				-0.4
3,515,750	+				+0.6
3,515,750	+				+0.6
3,515,751	-				+0.2
3,515,791	+				-0.2
3,515,791	+				-0.4
3,515,791	+				+0.6
3,515,791	+				-0.5
3,515,791	+				-0.5
3,515,791	+				-1.5
3,515,791	+				-0.7
3,515,792	-				-1.6
3,515,821	+		RPSI07_RS23945	0.17	-0.7
3,515,821	+		RPSI07_RS23945	0.17	+1.6
3,515,821	+		RPSI07_RS23945	0.17	-1.0
3,515,822	-		RPSI07_RS23945	0.18	+0.4
3,515,822	-		RPSI07_RS23945	0.18	-1.1
3,515,822	-		RPSI07_RS23945	0.18	-0.8
3,515,834	+		RPSI07_RS23945	0.22	-0.7
3,515,835	-		RPSI07_RS23945	0.22	-3.0
3,515,835	-		RPSI07_RS23945	0.22	-0.3
3,515,856	-		RPSI07_RS23945	0.29	-0.0
3,515,891	-		RPSI07_RS23945	0.40	-1.4
3,515,934	+		RPSI07_RS23945	0.54	-0.6
3,515,935	-		RPSI07_RS23945	0.54	-2.4
3,515,935	-		RPSI07_RS23945	0.54	-0.4
3,515,935	-		RPSI07_RS23945	0.54	+0.2
3,515,935	-		RPSI07_RS23945	0.54	-0.4
3,516,010	+		RPSI07_RS23945	0.79	-0.5
3,516,092	-				-2.3
3,516,162	-				+0.6