Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24700

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
1,861,242	-		RPSI07_RS07000	0.37	+2.4
1,861,242	-		RPSI07_RS07000	0.37	+3.2
1,861,242	-		RPSI07_RS07000	0.37	+0.1
1,861,242	-		RPSI07_RS07000	0.37	-1.0
1,861,242	-		RPSI07_RS07000	0.37	+1.2
1,861,242	-		RPSI07_RS07000	0.37	-0.8
1,861,253	+		RPSI07_RS07000	0.40	-0.7
1,861,253	+		RPSI07_RS07000	0.40	-0.4
1,861,253	+		RPSI07_RS07000	0.40	+0.2
1,861,253	+		RPSI07_RS07000	0.40	+0.8
1,861,370	+		RPSI07_RS07000	0.73	-0.0
1,861,370	+		RPSI07_RS07000	0.73	-1.3
1,861,370	+		RPSI07_RS07000	0.73	+1.0
1,861,370	+		RPSI07_RS07000	0.73	-0.3
1,861,370	+		RPSI07_RS07000	0.73	+0.8
1,861,371	-		RPSI07_RS07000	0.73	-0.9
1,861,411	+		RPSI07_RS07000	0.85	+2.8
1,861,412	+		RPSI07_RS07000	0.85	-1.2
1,861,412	+		RPSI07_RS07000	0.85	+1.1
1,861,412	+		RPSI07_RS07000	0.85	-0.7
1,861,412	+		RPSI07_RS07000	0.85	-1.5
1,861,412	+		RPSI07_RS07000	0.85	-0.8
1,861,412	+		RPSI07_RS07000	0.85	+3.7
1,861,412	+		RPSI07_RS07000	0.85	-0.1
1,861,412	+		RPSI07_RS07000	0.85	-0.3
1,861,412	+		RPSI07_RS07000	0.85	+0.1
1,861,413	-		RPSI07_RS07000	0.85	+1.0
1,861,413	-		RPSI07_RS07000	0.85	+2.4
1,861,413	-		RPSI07_RS07000	0.85	-2.2
1,861,413	-		RPSI07_RS07000	0.85	+0.3
1,861,413	-		RPSI07_RS07000	0.85	+0.9
1,861,413	-		RPSI07_RS07000	0.85	+0.8
1,861,413	-		RPSI07_RS07000	0.85	-0.0
1,861,413	-		RPSI07_RS07000	0.85	-1.0
1,861,413	-		RPSI07_RS07000	0.85	+0.3
1,861,413	-		RPSI07_RS07000	0.85	-0.3
1,861,413	-		RPSI07_RS07000	0.85	-1.2
1,861,413	-		RPSI07_RS07000	0.85	+1.1
1,861,413	-		RPSI07_RS07000	0.85	-0.5
1,861,413	-		RPSI07_RS07000	0.85	-1.2
1,861,415	-		RPSI07_RS07000	0.86	-2.2
1,861,437	-				+0.6
1,861,473	+				+0.3
1,861,473	+				-0.7
1,861,474	-				+0.0
1,861,527	+				-2.5
1,861,527	+				+2.8
1,861,527	+				+0.0
1,861,528	-				+2.7
1,861,528	-				-1.8
1,861,528	-				-1.2
1,861,528	-				+0.8
1,861,528	-				+0.3
1,861,528	-				+1.4
1,861,528	-				-2.0
1,861,528	-				-1.7
1,861,528	-				+1.3
1,861,588	-		RPSI07_RS07005	0.12	+0.9
1,861,588	-		RPSI07_RS07005	0.12	-0.5
1,861,588	-		RPSI07_RS07005	0.12	-0.3
1,861,588	-		RPSI07_RS07005	0.12	+0.8
1,861,588	-		RPSI07_RS07005	0.12	-0.5
1,861,588	-		RPSI07_RS07005	0.12	+0.1
1,861,588	-		RPSI07_RS07005	0.12	-2.0
1,861,588	-		RPSI07_RS07005	0.12	-1.3
1,861,701	+		RPSI07_RS07005	0.71	-0.9
1,861,701	+		RPSI07_RS07005	0.71	-0.2
1,861,701	+		RPSI07_RS07005	0.71	-0.2
1,861,702	-		RPSI07_RS07005	0.72	+1.4
1,861,702	-		RPSI07_RS07005	0.72	-0.4
1,861,702	-		RPSI07_RS07005	0.72	+1.2
1,861,712	+		RPSI07_RS07005	0.77	+1.6
1,861,731	+		RPSI07_RS07005	0.87	-0.6
1,861,731	+		RPSI07_RS07005	0.87	+0.6
1,861,731	+		RPSI07_RS07005	0.87	-0.2
1,861,731	+		RPSI07_RS07005	0.87	-0.5
1,861,732	-		RPSI07_RS07005	0.88	+0.4
1,861,828	+				+1.0
1,861,828	+				+0.8
1,861,829	-				+1.8
1,861,829	-				-1.0
1,861,829	-				-0.6
1,861,832	+				+0.0
1,861,832	+				+1.6
1,861,832	+				-3.0
1,861,833	-				+0.3
1,861,833	-				-0.7
1,861,833	-				+2.3
1,861,833	-				-1.3
1,861,833	-				-0.5
1,861,833	-				+0.3
1,861,889	+				-1.9
1,861,890	-				-0.7
1,861,890	-				-0.7
1,861,890	-				+0.2
1,861,890	-				+1.7
1,861,890	-				+0.8
1,861,890	-				-0.5
1,861,949	+				-0.5
1,861,949	+				-0.3
1,861,950	-				-1.0
1,861,950	-				-0.2
1,861,950	-				+0.4
1,861,950	-				+0.4
1,861,951	-				-1.5
1,862,099	+		RPSI07_RS24700	0.33	-1.0
1,862,099	+		RPSI07_RS24700	0.33	-0.9
1,862,100	-		RPSI07_RS24700	0.33	+0.3
1,862,185	+		RPSI07_RS24700	0.70	-1.0
1,862,185	+		RPSI07_RS24700	0.70	+1.4
1,862,186	-		RPSI07_RS24700	0.70	+0.0
1,862,187	-		RPSI07_RS24700	0.71	-2.0
1,862,203	+		RPSI07_RS24700	0.77	-0.8
1,862,203	+		RPSI07_RS24700	0.77	-0.8
1,862,203	+		RPSI07_RS24700	0.77	-1.4
1,862,204	-		RPSI07_RS24700	0.78	-1.0
1,862,204	-		RPSI07_RS24700	0.78	+0.2
1,862,204	-		RPSI07_RS24700	0.78	-1.3
1,862,219	+		RPSI07_RS24700	0.84	+0.7
1,862,219	+		RPSI07_RS24700	0.84	+2.2
1,862,220	-		RPSI07_RS24700	0.85	-1.1
1,862,220	-		RPSI07_RS24700	0.85	-1.5
1,862,220	-		RPSI07_RS24700	0.85	-0.7
1,862,220	-		RPSI07_RS24700	0.85	-0.1
1,862,242	+				+0.3
1,862,242	+				+0.8
1,862,242	+				+1.0
1,862,242	+				+0.8
1,862,242	+				-0.2
1,862,242	+				-0.4
1,862,242	+				+0.8
1,862,242	+				+1.4
1,862,243	-				-0.3
1,862,243	-				+2.4
1,862,243	-				-1.0
1,862,243	-				+0.1
1,862,243	-				+0.3
1,862,243	-				-1.6
1,862,243	-				-1.8
1,862,293	-				+0.8
1,862,440	+				-0.3
1,862,441	-				+0.3
1,862,441	-				-0.4
1,862,441	-				+0.1
1,862,472	+		RPSI07_RS07015	0.14	+3.4
1,862,472	+		RPSI07_RS07015	0.14	-1.3
1,862,472	+		RPSI07_RS07015	0.14	+0.3
1,862,472	+		RPSI07_RS07015	0.14	+0.3
1,862,472	+		RPSI07_RS07015	0.14	+0.4
1,862,472	+		RPSI07_RS07015	0.14	-2.5
1,862,472	+		RPSI07_RS07015	0.14	+2.4
1,862,472	+		RPSI07_RS07015	0.14	+0.3
1,862,472	+		RPSI07_RS07015	0.14	+0.6
1,862,473	-		RPSI07_RS07015	0.14	-0.1
1,862,473	-		RPSI07_RS07015	0.14	-1.9
1,862,473	-		RPSI07_RS07015	0.14	-2.3
1,862,473	-		RPSI07_RS07015	0.14	+1.4
1,862,473	-		RPSI07_RS07015	0.14	+0.5
1,862,473	-		RPSI07_RS07015	0.14	-0.3
1,862,473	-		RPSI07_RS07015	0.14	+0.6
1,862,473	-		RPSI07_RS07015	0.14	-2.3
1,862,473	-		RPSI07_RS07015	0.14	+0.6
1,862,640	-		RPSI07_RS07015	0.60	-0.8
1,862,640	-		RPSI07_RS07015	0.60	+0.5
1,862,640	-		RPSI07_RS07015	0.60	+1.6
1,862,640	-		RPSI07_RS07015	0.60	+1.2
1,862,709	+		RPSI07_RS07015	0.79	-1.2
1,862,709	+		RPSI07_RS07015	0.79	-1.8
1,862,710	-		RPSI07_RS07015	0.79	+0.7
1,862,710	-		RPSI07_RS07015	0.79	-1.5
1,862,710	-		RPSI07_RS07015	0.79	-1.0
1,862,784	+				-1.5
1,862,784	+				+1.0
1,862,784	+				-1.2
1,862,784	+				+0.4
1,862,784	+				+0.2
1,862,784	+				+1.3
1,862,784	+				-2.2
1,862,785	-				-1.4
1,862,797	+				+0.7
1,862,797	+				-1.0
1,862,797	+				-0.4
1,862,797	+				+0.4
1,862,797	+				+0.2
1,862,798	-				+1.3
1,862,798	-				-0.7
1,862,798	-				+0.4
1,862,798	-				+0.3
1,862,798	-				-0.2
1,862,843	-				+1.4
1,862,843	-				-0.2
1,862,855	+				+1.6
1,862,855	+				+0.8
1,862,855	+				-1.9
1,862,855	+				+0.6
1,862,855	+				+1.2
1,862,856	-				-0.6
1,862,856	-				-0.2
1,862,856	-				-1.1
1,862,856	-				-0.3
1,862,856	-				-1.3
1,862,905	-				-1.3
1,862,905	-				-0.3
1,862,905	-				+3.0
1,862,919	+				+1.4
1,862,920	-				+0.7
1,862,920	-				-1.5
1,862,920	-				+4.7
1,862,938	-		RPSI07_RS07020	0.11	+0.6
1,862,938	-		RPSI07_RS07020	0.11	-0.7
1,862,980	-		RPSI07_RS07020	0.16	-2.0
1,862,980	-		RPSI07_RS07020	0.16	+0.1
1,862,980	-		RPSI07_RS07020	0.16	-2.2
1,862,980	-		RPSI07_RS07020	0.16	+0.3
1,863,099	+		RPSI07_RS07020	0.31	-1.1
1,863,099	+		RPSI07_RS07020	0.31	+1.4
1,863,099	+		RPSI07_RS07020	0.31	+0.8
1,863,099	+		RPSI07_RS07020	0.31	+1.4
1,863,099	+		RPSI07_RS07020	0.31	-0.4
1,863,099	+		RPSI07_RS07020	0.31	-2.5
1,863,099	+		RPSI07_RS07020	0.31	-0.6
1,863,100	-		RPSI07_RS07020	0.31	-1.9
1,863,100	-		RPSI07_RS07020	0.31	+0.1
1,863,100	-		RPSI07_RS07020	0.31	+1.1
1,863,100	-		RPSI07_RS07020	0.31	-0.6
1,863,100	-		RPSI07_RS07020	0.31	-2.9
1,863,100	-		RPSI07_RS07020	0.31	+3.4
1,863,100	-		RPSI07_RS07020	0.31	+1.1
1,863,155	+		RPSI07_RS07020	0.38	+0.3
1,863,155	+		RPSI07_RS07020	0.38	+1.0
1,863,155	+		RPSI07_RS07020	0.38	-1.5
1,863,156	-		RPSI07_RS07020	0.38	-0.2
1,863,174	-		RPSI07_RS07020	0.40	-1.2
1,863,174	-		RPSI07_RS07020	0.40	-0.2
1,863,210	+		RPSI07_RS07020	0.45	-1.1
1,863,211	-		RPSI07_RS07020	0.45	-0.5
1,863,226	+		RPSI07_RS07020	0.47	-0.2
1,863,226	+		RPSI07_RS07020	0.47	-2.2
1,863,227	-		RPSI07_RS07020	0.47	-0.2