Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS19830

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
2,626,452	+		RPSI07_RS19825	0.34	-0.7
2,626,452	+		RPSI07_RS19825	0.34	+0.6
2,626,453	-		RPSI07_RS19825	0.35	-3.5
2,626,453	-		RPSI07_RS19825	0.35	-0.2
2,626,453	-		RPSI07_RS19825	0.35	+1.1
2,626,608	+				-2.0
2,626,787	-		RPSI07_RS19825	0.60	-0.5
2,626,787	-		RPSI07_RS19825	0.60	+1.1
2,626,827	+		RPSI07_RS19825	0.63	-0.8
2,626,827	+		RPSI07_RS19825	0.63	+0.1
2,626,828	-		RPSI07_RS19825	0.63	-0.4
2,626,828	-		RPSI07_RS19825	0.63	-0.9
2,626,828	-		RPSI07_RS19825	0.63	+0.2
2,626,828	-				+0.7
2,626,828	-		RPSI07_RS19825	0.63	-0.5
2,626,960	-		RPSI07_RS19825	0.73	-1.4
2,627,100	+		RPSI07_RS19825	0.84	-1.6
2,627,100	+		RPSI07_RS19825	0.84	+2.7
2,627,100	+		RPSI07_RS19825	0.84	-0.7
2,627,331	-				+2.7
2,627,393	+				-2.3
2,627,393	+				+0.2
2,627,393	+				-0.5
2,627,394	-				+0.1
2,627,394	-				+0.0
2,627,394	-				+0.3
2,627,394	-				+0.5
2,627,394	-				-0.2
2,627,394	-				+0.9
2,627,394	-				+3.4
2,627,396	-				-0.1
2,627,447	+				-0.3
2,627,448	-				+2.7
2,627,565	+				+3.5
2,627,566	-				-1.3
2,627,646	-				+0.7
2,627,862	+				-0.4
2,627,863	-				+0.2
2,627,863	-				-0.7
2,627,876	+				+0.7
2,627,877	-				+1.1
2,627,910	-		RPSI07_RS19830	0.10	+1.4
2,627,912	+		RPSI07_RS19830	0.10	+1.7
2,627,912	+		RPSI07_RS19830	0.10	+1.5
2,627,912	+		RPSI07_RS19830	0.10	-1.0
2,627,912	+		RPSI07_RS19830	0.10	-0.5
2,627,912	+		RPSI07_RS19830	0.10	+0.1
2,627,912	+		RPSI07_RS19830	0.10	+2.7
2,627,913	-		RPSI07_RS19830	0.10	-0.9
2,627,913	-		RPSI07_RS19830	0.10	+3.4
2,628,026	+		RPSI07_RS19830	0.12	-0.7
2,628,392	+		RPSI07_RS19830	0.18	+0.1
2,628,393	-		RPSI07_RS19830	0.18	-2.2
2,628,981	+		RPSI07_RS19830	0.28	+0.5
2,628,982	-		RPSI07_RS19830	0.28	-0.1
2,629,252	+		RPSI07_RS19830	0.32	-0.6
2,629,253	-		RPSI07_RS19830	0.32	+0.2
2,629,253	-		RPSI07_RS19830	0.32	+0.4
2,629,308	-		RPSI07_RS19830	0.33	-0.5
2,629,308	-		RPSI07_RS19830	0.33	-1.4
2,629,352	+		RPSI07_RS19830	0.34	+3.4
2,629,352	+		RPSI07_RS19830	0.34	+0.2
2,629,352	+		RPSI07_RS19830	0.34	-0.0
2,629,356	-		RPSI07_RS19830	0.34	-0.5
2,629,356	-		RPSI07_RS19830	0.34	-0.2
2,629,356	-		RPSI07_RS19830	0.34	+0.1
2,629,356	-		RPSI07_RS19830	0.34	+0.6
2,629,904	+		RPSI07_RS19830	0.43	+0.6
2,629,904	+		RPSI07_RS19830	0.43	+0.2
2,629,904	+		RPSI07_RS19830	0.43	-0.4
2,629,904	+		RPSI07_RS19830	0.43	+0.2
2,629,904	+		RPSI07_RS19830	0.43	+0.8
2,629,905	-		RPSI07_RS19830	0.43	-0.4
2,629,905	-		RPSI07_RS19830	0.43	+0.6
2,629,905	-		RPSI07_RS19830	0.43	+0.5
2,629,905	-		RPSI07_RS19830	0.43	+1.0
2,629,905	-		RPSI07_RS19830	0.43	+3.8
2,629,905	-		RPSI07_RS19830	0.43	-1.2
2,629,907	+		RPSI07_RS19830	0.43	+0.1
2,629,907	+		RPSI07_RS19830	0.43	+0.6
2,629,908	-		RPSI07_RS19830	0.43	-0.5
2,629,908	-		RPSI07_RS19830	0.43	-0.1
2,629,908	-		RPSI07_RS19830	0.43	+1.4
2,629,910	+		RPSI07_RS19830	0.43	-0.5
2,629,910	+		RPSI07_RS19830	0.43	+0.2
2,629,911	-		RPSI07_RS19830	0.43	-0.4
2,629,911	-		RPSI07_RS19830	0.43	+2.4
2,629,911	-		RPSI07_RS19830	0.43	+0.7
2,629,911	-		RPSI07_RS19830	0.43	-1.0
2,629,911	-		RPSI07_RS19830	0.43	-1.1
2,629,942	+		RPSI07_RS19830	0.44	+0.6
2,629,943	-		RPSI07_RS19830	0.44	+2.5
2,630,120	+		RPSI07_RS19830	0.47	-0.5
2,630,120	+		RPSI07_RS19830	0.47	-1.8
2,630,121	-		RPSI07_RS19830	0.47	+1.1
2,630,151	+		RPSI07_RS19830	0.47	-0.5
2,630,152	-		RPSI07_RS19830	0.47	-1.6
2,630,206	+		RPSI07_RS19830	0.48	+1.2
2,630,206	+		RPSI07_RS19830	0.48	+2.3
2,630,288	+		RPSI07_RS19830	0.50	+0.1
2,630,288	+		RPSI07_RS19830	0.50	+0.9
2,630,289	-		RPSI07_RS19830	0.50	-0.5
2,630,289	-		RPSI07_RS19830	0.50	-1.2
2,630,289	-		RPSI07_RS19830	0.50	-0.3
2,630,289	-		RPSI07_RS19830	0.50	-0.6
2,630,289	-		RPSI07_RS19830	0.50	-0.1
2,630,348	+		RPSI07_RS19830	0.51	-0.4
2,630,348	+		RPSI07_RS19830	0.51	-0.5
2,630,348	+		RPSI07_RS19830	0.51	+0.1
2,630,349	-		RPSI07_RS19830	0.51	+1.1
2,630,349	-		RPSI07_RS19830	0.51	-0.5
2,630,349	-		RPSI07_RS19830	0.51	+0.5
2,630,349	-		RPSI07_RS19830	0.51	-0.7
2,630,609	+		RPSI07_RS19830	0.55	+1.6
2,631,092	+		RPSI07_RS19830	0.63	-1.3
2,631,092	+		RPSI07_RS19830	0.63	+0.5
2,631,095	+		RPSI07_RS19830	0.63	+0.1
2,631,095	+		RPSI07_RS19830	0.63	+1.1
2,631,095	+		RPSI07_RS19830	0.63	+0.9
2,631,096	-				+2.1
2,631,138	+		RPSI07_RS19830	0.64	+1.6
2,631,138	+		RPSI07_RS19830	0.64	+0.1
2,631,138	+		RPSI07_RS19830	0.64	-2.4
2,631,138	+		RPSI07_RS19830	0.64	+2.3
2,631,139	-		RPSI07_RS19830	0.64	+0.6
2,631,356	+		RPSI07_RS19830	0.67	-0.3
2,631,357	-		RPSI07_RS19830	0.67	-0.8
2,631,357	-		RPSI07_RS19830	0.67	-0.6
2,631,357	-		RPSI07_RS19830	0.67	+0.1
2,631,357	-		RPSI07_RS19830	0.67	+1.3
2,631,357	-		RPSI07_RS19830	0.67	+1.6
2,631,357	-		RPSI07_RS19830	0.67	+0.1
2,631,357	-		RPSI07_RS19830	0.67	+0.2
2,631,464	+		RPSI07_RS19830	0.69	+0.1
2,631,465	-		RPSI07_RS19830	0.69	+2.3
2,631,465	-		RPSI07_RS19830	0.69	-0.2
2,631,465	-		RPSI07_RS19830	0.69	+1.1
2,631,465	-		RPSI07_RS19830	0.69	+0.1
2,631,497	+		RPSI07_RS19830	0.70	+1.1
2,631,497	+		RPSI07_RS19830	0.70	-0.0
2,631,498	-		RPSI07_RS19830	0.70	-0.2
2,631,498	-		RPSI07_RS19830	0.70	+0.2
2,631,569	+		RPSI07_RS19830	0.71	-1.6
2,631,848	+		RPSI07_RS19830	0.75	+0.5
2,631,848	+		RPSI07_RS19830	0.75	+0.7
2,631,848	+		RPSI07_RS19830	0.75	+0.5
2,631,848	+		RPSI07_RS19830	0.75	+0.5
2,631,849	-		RPSI07_RS19830	0.76	-0.5
2,631,849	-		RPSI07_RS19830	0.76	-0.1
2,631,914	+		RPSI07_RS19830	0.77	-1.6
2,631,915	-		RPSI07_RS19830	0.77	-2.0
2,631,915	-		RPSI07_RS19830	0.77	-0.6
2,631,938	+		RPSI07_RS19830	0.77	+0.5
2,632,219	+		RPSI07_RS19830	0.82	+0.5
2,632,220	-		RPSI07_RS19830	0.82	+1.5
2,632,220	-		RPSI07_RS19830	0.82	-2.0
2,632,220	-		RPSI07_RS19830	0.82	+1.5
2,632,269	-		RPSI07_RS19830	0.82	-0.3
2,632,269	-		RPSI07_RS19830	0.82	-0.6
2,632,325	+		RPSI07_RS19830	0.83	-0.4
2,632,325	+		RPSI07_RS19830	0.83	-2.4
2,632,325	+		RPSI07_RS19830	0.83	+1.2
2,632,325	+		RPSI07_RS19830	0.83	-0.5
2,632,325	+		RPSI07_RS19830	0.83	+0.1
2,632,326	-		RPSI07_RS19830	0.83	+0.7
2,632,326	-		RPSI07_RS19830	0.83	-0.3
2,632,326	-		RPSI07_RS19830	0.83	+3.8
2,632,326	-		RPSI07_RS19830	0.83	-0.3
2,632,326	-				-3.3
2,632,326	-		RPSI07_RS19830	0.83	+0.3
2,632,326	-		RPSI07_RS19830	0.83	+1.1
2,632,457	+		RPSI07_RS19830	0.86	-0.7
2,632,482	-		RPSI07_RS19830	0.86	+1.9
2,632,554	-		RPSI07_RS19830	0.87	-0.3
2,632,554	-		RPSI07_RS19830	0.87	-1.1
2,632,649	+		RPSI07_RS19830	0.89	-0.7
2,632,649	+		RPSI07_RS19830	0.89	+2.1
2,632,650	-		RPSI07_RS19830	0.89	-0.9
2,632,658	+		RPSI07_RS19830	0.89	+0.7
2,632,658	+		RPSI07_RS19830	0.89	+1.1
2,632,658	+		RPSI07_RS19830	0.89	+0.5
2,632,659	-		RPSI07_RS19830	0.89	+1.1
2,632,659	-		RPSI07_RS19830	0.89	+1.1
2,632,664	+		RPSI07_RS19830	0.89	-0.3
2,632,665	-		RPSI07_RS19830	0.89	-0.1
2,632,665	-		RPSI07_RS19830	0.89	-0.0
2,632,665	-		RPSI07_RS19830	0.89	+0.1
2,632,808	+				+0.8
2,632,809	-				+0.3
2,632,809	-				-0.5
2,632,809	-				-1.7
2,632,847	+				-1.1
2,632,848	-				+1.6
2,632,907	+				+1.0
2,632,907	+				+0.8
2,632,907	+				-0.5
2,632,907	+				+0.7
2,632,907	+				-2.5
2,632,907	+				+2.5
2,632,908	-				-0.7
2,632,908	-				-0.8
2,632,908	-				-0.0
2,632,908	-				+0.6
2,632,908	-				+0.5
2,632,908	-				-1.0
2,632,908	-				+1.6
2,632,908	-				-0.1
2,632,909	-				+0.2
2,632,910	+				+2.1
2,632,910	+				-0.8
2,632,910	+				+0.2
2,632,910	+				-1.3
2,632,910	+				-0.6
2,632,911	-				-0.5
2,632,911	-				+0.2
2,632,911	-				+3.2
2,632,997	+				+1.1
2,632,997	+				-0.2
2,633,036	+				-1.4
2,633,036	+				-0.4
2,633,037	-				-0.2
2,633,037	-				-0.7
2,633,037	-				+0.2
2,633,037	-				-0.5
2,633,162	+				-0.9
2,633,163	-				+0.8
2,633,163	-				-0.9
2,633,242	-				+1.6
2,633,243	+				-2.3
2,633,243	+				-0.7
2,633,243	+				-2.4
2,633,243	+				+0.3
2,633,243	+				+0.4
2,633,243	+				+3.1
2,633,244	-				-0.3
2,633,244	-				-0.5
2,633,244	-				+1.1
2,633,244	-				+4.1
2,633,325	-				+1.3
2,633,325	-				-2.0
2,633,325	-				+0.6
2,633,332	+				+1.0
2,633,332	+				+2.1
2,633,333	-				-0.2
2,633,371	+				+2.1
2,633,371	+				-1.0
2,633,381	+				+1.1
2,633,381	+				+1.4
2,633,382	-				-0.3
2,633,406	+				-1.2
2,633,407	-				+2.1
2,633,517	+		RPSI07_RS19835	0.12	+1.9
2,633,517	+		RPSI07_RS19835	0.12	-0.8
2,633,517	+		RPSI07_RS19835	0.12	+0.2
2,633,518	-		RPSI07_RS19835	0.12	+1.3
2,633,518	-		RPSI07_RS19835	0.12	+0.3
2,633,558	+		RPSI07_RS19835	0.15	-0.3
2,633,558	+		RPSI07_RS19835	0.15	+0.1
2,633,559	-		RPSI07_RS19835	0.15	+0.6
2,633,559	-		RPSI07_RS19835	0.15	+1.1
2,633,559	-		RPSI07_RS19835	0.15	+1.1
2,633,576	+		RPSI07_RS19835	0.16	+0.1
2,633,576	+		RPSI07_RS19835	0.16	+1.8
2,633,576	+		RPSI07_RS19835	0.16	+1.1
2,633,576	+		RPSI07_RS19835	0.16	-1.4
2,633,576	+		RPSI07_RS19835	0.16	+5.1
2,633,576	+		RPSI07_RS19835	0.16	-1.8
2,633,589	-		RPSI07_RS19835	0.18	+0.6
2,633,648	+		RPSI07_RS19835	0.22	-0.8
2,633,648	+		RPSI07_RS19835	0.22	-1.3
2,633,648	+		RPSI07_RS19835	0.22	+0.8
2,633,649	-		RPSI07_RS19835	0.22	+1.1
2,633,789	+		RPSI07_RS19835	0.34	+1.1
2,633,790	-		RPSI07_RS19835	0.34	+0.8
2,633,790	-		RPSI07_RS19835	0.34	-0.9
2,633,792	+		RPSI07_RS19835	0.34	-0.1
2,633,792	+		RPSI07_RS19835	0.34	+1.3
2,633,792	+		RPSI07_RS19835	0.34	-1.0
2,633,793	-		RPSI07_RS19835	0.34	-0.3
2,633,841	-		RPSI07_RS19835	0.38	+0.9
2,633,841	-		RPSI07_RS19835	0.38	+0.7
2,633,841	-		RPSI07_RS19835	0.38	+0.1
2,633,895	-		RPSI07_RS19835	0.42	-0.2
2,633,895	-		RPSI07_RS19835	0.42	-0.7
2,633,895	-		RPSI07_RS19835	0.42	-3.3
2,633,978	+		RPSI07_RS19835	0.49	-0.4
2,633,978	+		RPSI07_RS19835	0.49	+0.3
2,633,979	-		RPSI07_RS19835	0.49	-1.3
2,633,979	-		RPSI07_RS19835	0.49	+1.5
2,633,979	-		RPSI07_RS19835	0.49	-0.7
2,633,979	-		RPSI07_RS19835	0.49	-1.4
2,634,009	-		RPSI07_RS19835	0.51	+1.1
2,634,010	-		RPSI07_RS19835	0.51	+1.1
2,634,038	+		RPSI07_RS19835	0.54	+1.6
2,634,039	-		RPSI07_RS19835	0.54	-2.0
2,634,039	-		RPSI07_RS19835	0.54	-0.4
2,634,039	-		RPSI07_RS19835	0.54	+0.5
2,634,041	+		RPSI07_RS19835	0.54	+0.1
2,634,158	-		RPSI07_RS19835	0.63	-1.3