Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS22790

Experiment: SMSA with Ralstonia_antibiotic_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix
3,260,294	+		RPSI07_RS22785	0.39	+0.6
3,260,294	+		RPSI07_RS22785	0.39	-0.8
3,260,294	+		RPSI07_RS22785	0.39	-1.8
3,260,294	+		RPSI07_RS22785	0.39	-0.2
3,260,294	+		RPSI07_RS22785	0.39	-1.0
3,260,294	+		RPSI07_RS22785	0.39	+1.3
3,260,294	+		RPSI07_RS22785	0.39	+0.6
3,260,295	-		RPSI07_RS22785	0.39	-1.5
3,260,295	-		RPSI07_RS22785	0.39	-1.2
3,260,295	-		RPSI07_RS22785	0.39	+0.5
3,260,357	+		RPSI07_RS22785	0.44	-1.3
3,260,573	+		RPSI07_RS22785	0.62	+0.9
3,260,573	+		RPSI07_RS22785	0.62	-0.1
3,260,574	-		RPSI07_RS22785	0.63	+0.2
3,260,640	+		RPSI07_RS22785	0.68	-0.4
3,260,642	+		RPSI07_RS22785	0.68	+0.4
3,260,642	+		RPSI07_RS22785	0.68	+0.7
3,260,642	+		RPSI07_RS22785	0.68	-0.5
3,260,642	+		RPSI07_RS22785	0.68	+2.5
3,260,643	-		RPSI07_RS22785	0.68	-0.6
3,260,643	-		RPSI07_RS22785	0.68	-1.0
3,260,643	-		RPSI07_RS22785	0.68	+0.2
3,260,643	-		RPSI07_RS22785	0.68	+0.9
3,260,643	-		RPSI07_RS22785	0.68	+1.7
3,260,717	+		RPSI07_RS22785	0.75	+1.9
3,260,717	+		RPSI07_RS22785	0.75	-1.4
3,260,717	+		RPSI07_RS22785	0.75	+1.7
3,260,717	+		RPSI07_RS22785	0.75	+2.7
3,260,717	+		RPSI07_RS22785	0.75	-1.0
3,260,717	+		RPSI07_RS22785	0.75	-0.5
3,260,717	+		RPSI07_RS22785	0.75	+0.6
3,260,717	+		RPSI07_RS22785	0.75	+1.9
3,260,717	+		RPSI07_RS22785	0.75	-0.3
3,260,717	+		RPSI07_RS22785	0.75	+1.3
3,260,717	+		RPSI07_RS22785	0.75	+0.9
3,260,717	+		RPSI07_RS22785	0.75	+2.4
3,260,718	-		RPSI07_RS22785	0.75	-1.2
3,260,718	-		RPSI07_RS22785	0.75	-0.1
3,260,718	-		RPSI07_RS22785	0.75	-0.1
3,260,718	-		RPSI07_RS22785	0.75	-0.9
3,260,718	-		RPSI07_RS22785	0.75	+0.7
3,260,718	-		RPSI07_RS22785	0.75	-1.2
3,260,718	-		RPSI07_RS22785	0.75	-0.6
3,260,750	+		RPSI07_RS22785	0.77	+1.2
3,260,750	+		RPSI07_RS22785	0.77	+1.7
3,260,751	-		RPSI07_RS22785	0.77	+1.4
3,260,751	-		RPSI07_RS22785	0.77	-0.6
3,260,751	-		RPSI07_RS22785	0.77	-1.8
3,260,831	+		RPSI07_RS22785	0.84	-0.4
3,260,831	+		RPSI07_RS22785	0.84	+0.4
3,260,832	-		RPSI07_RS22785	0.84	+0.4
3,260,832	-		RPSI07_RS22785	0.84	-1.8
3,260,832	-		RPSI07_RS22785	0.84	-0.9
3,260,832	-		RPSI07_RS22785	0.84	+2.6
3,260,894	+		RPSI07_RS22785	0.90	-1.2
3,260,894	+		RPSI07_RS22785	0.90	+0.9
3,260,895	-		RPSI07_RS22785	0.90	+1.9
3,260,942	+				-0.3
3,260,943	-				-0.6
3,260,999	+				-0.7
3,260,999	+				-0.3
3,260,999	+				-1.3
3,260,999	+				-1.1
3,261,000	-				-0.2
3,261,047	-				-0.3
3,261,047	-				+2.2
3,261,064	+				-1.1
3,261,144	-				-1.1
3,261,144	-				-0.3
3,261,144	-				-0.6
3,261,222	+				+3.4
3,261,222	+				+0.8
3,261,223	-				-0.2
3,261,223	-				+0.2
3,261,229	+				-0.3
3,261,229	+				-0.5
3,261,229	+				+0.4
3,261,229	+				-0.2
3,261,229	+				+0.5
3,261,230	-				+0.4
3,261,230	-				-1.5
3,261,230	-				-0.8
3,261,230	-				-0.2
3,261,233	+				+1.5
3,261,233	+				-0.6
3,261,233	+				+0.6
3,261,234	-				+0.4
3,261,234	-				+2.9
3,261,349	+				-0.9
3,261,349	+				+0.6
3,261,445	+				-0.4
3,261,445	+				-0.1
3,261,446	-				-0.1
3,261,448	+				-1.9
3,261,449	-				-0.9
3,261,449	-				+1.9
3,261,493	+		RPSI07_RS22790	0.12	-0.3
3,261,493	+		RPSI07_RS22790	0.12	+0.9
3,261,494	-		RPSI07_RS22790	0.12	+0.2
3,261,494	-		RPSI07_RS22790	0.12	+0.9
3,261,679	+		RPSI07_RS22790	0.22	-0.9
3,261,679	+		RPSI07_RS22790	0.22	+3.7
3,261,679	+		RPSI07_RS22790	0.22	-1.9
3,261,680	-		RPSI07_RS22790	0.23	+0.9
3,261,716	-		RPSI07_RS22790	0.25	+0.7
3,261,724	+		RPSI07_RS22790	0.25	+0.3
3,261,724	+		RPSI07_RS22790	0.25	+0.9
3,261,725	-		RPSI07_RS22790	0.25	-1.1
3,261,725	-		RPSI07_RS22790	0.25	-1.9
3,261,727	+		RPSI07_RS22790	0.25	-0.2
3,261,727	+		RPSI07_RS22790	0.25	-0.5
3,261,728	-		RPSI07_RS22790	0.25	-3.0
3,261,728	-		RPSI07_RS22790	0.25	-2.1
3,261,728	-		RPSI07_RS22790	0.25	+0.4
3,261,728	-		RPSI07_RS22790	0.25	-0.5
3,261,827	-		RPSI07_RS22790	0.31	-0.1
3,261,928	+		RPSI07_RS22790	0.36	-1.2
3,261,928	+		RPSI07_RS22790	0.36	+0.9
3,261,929	-		RPSI07_RS22790	0.36	-2.9
3,262,017	+		RPSI07_RS22790	0.41	-1.1
3,262,073	-		RPSI07_RS22790	0.44	-1.0
3,262,106	-		RPSI07_RS22790	0.46	-1.6
3,262,156	+		RPSI07_RS22790	0.49	-1.5
3,262,156	+		RPSI07_RS22790	0.49	-0.7
3,262,157	-		RPSI07_RS22790	0.49	-0.3
3,262,157	-		RPSI07_RS22790	0.49	-0.1
3,262,157	-		RPSI07_RS22790	0.49	+0.4
3,262,157	-		RPSI07_RS22790	0.49	-1.6
3,262,157	-		RPSI07_RS22790	0.49	-0.8
3,262,198	+		RPSI07_RS22790	0.51	-0.3
3,262,199	-		RPSI07_RS22790	0.51	+0.3
3,262,199	-		RPSI07_RS22790	0.51	+0.0
3,262,199	-		RPSI07_RS22790	0.51	+0.2
3,262,298	-		RPSI07_RS22790	0.56	-0.1
3,262,303	+		RPSI07_RS22790	0.57	-1.9
3,262,303	+		RPSI07_RS22790	0.57	+2.4
3,262,304	-		RPSI07_RS22790	0.57	+0.5
3,262,304	-		RPSI07_RS22790	0.57	+0.5
3,262,327	+		RPSI07_RS22790	0.58	+0.3
3,262,327	+		RPSI07_RS22790	0.58	+1.9
3,262,327	+		RPSI07_RS22790	0.58	+3.3
3,262,375	+		RPSI07_RS22790	0.61	+0.8
3,262,375	+		RPSI07_RS22790	0.61	-1.9
3,262,375	+		RPSI07_RS22790	0.61	-0.3
3,262,376	-		RPSI07_RS22790	0.61	-2.5
3,262,419	+		RPSI07_RS22790	0.63	-0.2
3,262,561	+		RPSI07_RS22790	0.71	-2.1
3,262,699	+		RPSI07_RS22790	0.78	+0.5
3,262,699	+		RPSI07_RS22790	0.78	-0.9
3,262,699	+		RPSI07_RS22790	0.78	+2.0
3,262,699	+		RPSI07_RS22790	0.78	-0.5
3,262,699	+		RPSI07_RS22790	0.78	-1.0
3,262,700	-		RPSI07_RS22790	0.78	+1.9
3,262,700	-		RPSI07_RS22790	0.78	-0.5
3,262,700	-		RPSI07_RS22790	0.78	-2.2
3,262,741	+		RPSI07_RS22790	0.81	-0.9
3,262,741	+		RPSI07_RS22790	0.81	+2.5
3,262,741	+		RPSI07_RS22790	0.81	+0.5
3,262,742	-		RPSI07_RS22790	0.81	+3.5
3,262,748	-				-0.6
3,262,762	+		RPSI07_RS22790	0.82	-1.6
3,262,837	+		RPSI07_RS22790	0.86	-2.4
3,262,837	+		RPSI07_RS22790	0.86	+0.2
3,262,837	+		RPSI07_RS22790	0.86	-0.3
3,262,837	+		RPSI07_RS22790	0.86	+1.9
3,262,838	-		RPSI07_RS22790	0.86	-0.6
3,262,873	+		RPSI07_RS22790	0.88	+0.1
3,263,009	-				+0.9
3,263,009	-				-1.6
3,263,232	+		RPSI07_RS22795	0.16	-0.6
3,263,521	-		RPSI07_RS22795	0.59	-0.6
3,263,761	-				+0.9
3,263,761	-				-1.3
3,263,784	-				-3.9
3,263,829	+				+1.7
3,263,829	+				-1.0
3,263,830	-				-1.1
3,263,830	-				-1.0