Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24290

Experiment: CPG no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02625 and RPSI07_RS24290 overlap by 62 nucleotidesRPSI07_RS24290 and RPSI07_RS02630 overlap by 4 nucleotidesRPSI07_RS02630 and RPSI07_RS02635 overlap by 1 nucleotides RPSI07_RS02625: RPSI07_RS02625 - LysR family transcriptional regulator, at 744,705 to 745,634 _RS02625 RPSI07_RS24290: RPSI07_RS24290 - hypothetical protein, at 745,573 to 745,758 _RS24290 RPSI07_RS02630: RPSI07_RS02630 - peptide chain release factor H, at 745,755 to 746,378 _RS02630 RPSI07_RS02635: RPSI07_RS02635 - RNA ligase RtcB family protein, at 746,378 to 747,514 _RS02635 Position (kb) 745 746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 744.619 kb on - strandat 744.625 kb on + strandat 744.625 kb on + strandat 744.625 kb on + strandat 744.625 kb on + strandat 744.625 kb on + strandat 744.625 kb on + strandat 744.626 kb on - strandat 745.035 kb on + strand, within RPSI07_RS02625at 745.035 kb on + strand, within RPSI07_RS02625at 745.035 kb on + strand, within RPSI07_RS02625at 745.035 kb on + strand, within RPSI07_RS02625at 745.035 kb on + strand, within RPSI07_RS02625at 745.036 kb on - strand, within RPSI07_RS02625at 745.036 kb on - strand, within RPSI07_RS02625at 745.036 kb on - strand, within RPSI07_RS02625at 745.221 kb on + strand, within RPSI07_RS02625at 745.221 kb on + strand, within RPSI07_RS02625at 745.221 kb on + strand, within RPSI07_RS02625at 745.221 kb on + strand, within RPSI07_RS02625at 745.222 kb on - strand, within RPSI07_RS02625at 745.222 kb on - strand, within RPSI07_RS02625at 745.222 kb on - strand, within RPSI07_RS02625at 745.222 kb on - strand, within RPSI07_RS02625at 745.222 kb on - strand, within RPSI07_RS02625at 745.338 kb on + strand, within RPSI07_RS02625at 745.339 kb on - strand, within RPSI07_RS02625at 745.339 kb on - strand, within RPSI07_RS02625at 745.422 kb on + strand, within RPSI07_RS02625at 745.422 kb on + strand, within RPSI07_RS02625at 745.422 kb on + strand, within RPSI07_RS02625at 745.423 kb on - strand, within RPSI07_RS02625at 745.423 kb on - strand, within RPSI07_RS02625at 745.973 kb on + strand, within RPSI07_RS02630at 745.973 kb on + strand, within RPSI07_RS02630at 745.973 kb on + strand, within RPSI07_RS02630at 745.973 kb on + strand, within RPSI07_RS02630at 745.974 kb on - strand, within RPSI07_RS02630at 746.135 kb on - strand, within RPSI07_RS02630at 746.226 kb on + strand, within RPSI07_RS02630at 746.226 kb on + strand, within RPSI07_RS02630at 746.227 kb on - strand, within RPSI07_RS02630at 746.227 kb on - strand, within RPSI07_RS02630at 746.306 kb on - strand, within RPSI07_RS02630at 746.306 kb on - strand, within RPSI07_RS02630at 746.403 kb on + strandat 746.403 kb on + strandat 746.403 kb on + strandat 746.403 kb on + strandat 746.403 kb on + strandat 746.404 kb on - strandat 746.433 kb on - strandat 746.433 kb on - strandat 746.433 kb on - strandat 746.433 kb on - strandat 746.508 kb on + strand, within RPSI07_RS02635at 746.508 kb on + strand, within RPSI07_RS02635at 746.508 kb on + strand, within RPSI07_RS02635at 746.509 kb on - strand, within RPSI07_RS02635at 746.509 kb on - strand, within RPSI07_RS02635at 746.509 kb on - strand, within RPSI07_RS02635at 746.682 kb on + strand, within RPSI07_RS02635at 746.682 kb on + strand, within RPSI07_RS02635

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG no stress control
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744,619 - -1.3
744,625 + -0.5
744,625 + -2.6
744,625 + +0.6
744,625 + -0.0
744,625 + +0.7
744,625 + +0.5
744,626 - +0.6
745,035 + RPSI07_RS02625 0.35 -0.9
745,035 + RPSI07_RS02625 0.35 +1.5
745,035 + RPSI07_RS02625 0.35 -0.7
745,035 + RPSI07_RS02625 0.35 -1.1
745,035 + RPSI07_RS02625 0.35 -1.4
745,036 - RPSI07_RS02625 0.36 -0.5
745,036 - RPSI07_RS02625 0.36 +0.1
745,036 - RPSI07_RS02625 0.36 -0.7
745,221 + RPSI07_RS02625 0.55 -0.7
745,221 + RPSI07_RS02625 0.55 -1.1
745,221 + RPSI07_RS02625 0.55 -1.2
745,221 + RPSI07_RS02625 0.55 -2.1
745,222 - RPSI07_RS02625 0.56 +2.3
745,222 - RPSI07_RS02625 0.56 -0.0
745,222 - RPSI07_RS02625 0.56 +0.4
745,222 - RPSI07_RS02625 0.56 -0.0
745,222 - RPSI07_RS02625 0.56 -0.6
745,338 + RPSI07_RS02625 0.68 -1.5
745,339 - RPSI07_RS02625 0.68 -1.8
745,339 - RPSI07_RS02625 0.68 -0.5
745,422 + RPSI07_RS02625 0.77 +3.0
745,422 + RPSI07_RS02625 0.77 -0.3
745,422 + RPSI07_RS02625 0.77 +0.2
745,423 - RPSI07_RS02625 0.77 +0.5
745,423 - RPSI07_RS02625 0.77 +2.7
745,973 + RPSI07_RS02630 0.35 -0.5
745,973 + RPSI07_RS02630 0.35 +0.4
745,973 + RPSI07_RS02630 0.35 -0.6
745,973 + RPSI07_RS02630 0.35 +0.1
745,974 - RPSI07_RS02630 0.35 +0.1
746,135 - RPSI07_RS02630 0.61 +0.1
746,226 + RPSI07_RS02630 0.75 -0.9
746,226 + RPSI07_RS02630 0.75 +0.1
746,227 - RPSI07_RS02630 0.76 -0.1
746,227 - RPSI07_RS02630 0.76 -0.3
746,306 - RPSI07_RS02630 0.88 -0.5
746,306 - RPSI07_RS02630 0.88 -1.9
746,403 + -0.5
746,403 + +1.4
746,403 + -0.1
746,403 + +0.2
746,403 + +0.2
746,404 - -1.6
746,433 - +0.4
746,433 - +1.4
746,433 - -0.9
746,433 - +1.7
746,508 + RPSI07_RS02635 0.11 +1.4
746,508 + RPSI07_RS02635 0.11 +0.3
746,508 + RPSI07_RS02635 0.11 +0.7
746,509 - RPSI07_RS02635 0.12 +0.3
746,509 - RPSI07_RS02635 0.12 -0.5
746,509 - RPSI07_RS02635 0.12 -1.8
746,682 + RPSI07_RS02635 0.27 -0.6
746,682 + RPSI07_RS02635 0.27 +0.5

Or see this region's nucleotide sequence