Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16960

Experiment: CPG no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS16945 and RPSI07_RS16950 are separated by 249 nucleotidesRPSI07_RS16950 and RPSI07_RS16955 are separated by 34 nucleotidesRPSI07_RS16955 and RPSI07_RS16960 are separated by 55 nucleotidesRPSI07_RS16960 and RPSI07_RS16965 are separated by 901 nucleotides RPSI07_RS16945: RPSI07_RS16945 - 23S ribosomal RNA, at 2,002,815 to 2,005,706 _RS16945 RPSI07_RS16950: RPSI07_RS16950 - tRNA-Ala, at 2,005,956 to 2,006,031 _RS16950 RPSI07_RS16955: RPSI07_RS16955 - tRNA-Ile, at 2,006,066 to 2,006,142 _RS16955 RPSI07_RS16960: RPSI07_RS16960 - 16S ribosomal RNA, at 2,006,198 to 2,007,742 _RS16960 RPSI07_RS16965: RPSI07_RS16965 - glutamine-hydrolyzing GMP synthase, at 2,008,644 to 2,010,263 _RS16965 Position (kb) 2006 2007 2008Strain fitness (log2 ratio) -1 0 1 2 3at 2008.165 kb on + strandat 2008.242 kb on - strandat 2008.279 kb on + strandat 2008.570 kb on - strandat 2008.570 kb on - strandat 2008.622 kb on + strandat 2008.623 kb on - strandat 2008.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG no stress control
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2,008,165 + +2.8
2,008,242 - +0.0
2,008,279 + -0.5
2,008,570 - -0.1
2,008,570 - -1.3
2,008,622 + +0.5
2,008,623 - +0.0
2,008,623 - -0.4

Or see this region's nucleotide sequence