Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS14655 and RPSI07_RS14660 are separated by 352 nucleotides RPSI07_RS14660 and RPSI07_RS14665 are separated by 245 nucleotides RPSI07_RS14665 and RPSI07_RS14670 are separated by 10 nucleotides
RPSI07_RS14655: RPSI07_RS14655 - malate dehydrogenase, at 1,463,366 to 1,464,355
_RS14655
RPSI07_RS14660: RPSI07_RS14660 - GntR family transcriptional regulator, at 1,464,708 to 1,465,520
_RS14660
RPSI07_RS14665: RPSI07_RS14665 - succinate dehydrogenase, cytochrome b556 subunit, at 1,465,766 to 1,466,176
_RS14665
RPSI07_RS14670: RPSI07_RS14670 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,466,187 to 1,466,552
_RS14670
Position (kb)
1464
1465
1466 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1464.501 kb on + strand at 1464.650 kb on - strand at 1464.659 kb on + strand at 1464.707 kb on + strand at 1464.707 kb on + strand at 1464.708 kb on - strand at 1464.825 kb on + strand, within RPSI07_RS14660 at 1464.826 kb on - strand, within RPSI07_RS14660 at 1464.826 kb on - strand, within RPSI07_RS14660 at 1464.922 kb on - strand, within RPSI07_RS14660 at 1465.296 kb on + strand, within RPSI07_RS14660 at 1465.297 kb on - strand, within RPSI07_RS14660 at 1465.479 kb on + strand at 1465.479 kb on + strand at 1465.479 kb on + strand at 1465.479 kb on + strand at 1465.497 kb on + strand at 1465.677 kb on + strand at 1465.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 1,464,501 + +1.9 1,464,650 - +0.4 1,464,659 + +0.4 1,464,707 + -1.0 1,464,707 + +0.8 1,464,708 - -0.8 1,464,825 + RPSI07_RS14660 0.14 -1.6 1,464,826 - RPSI07_RS14660 0.15 -3.4 1,464,826 - RPSI07_RS14660 0.15 +1.8 1,464,922 - RPSI07_RS14660 0.26 +0.8 1,465,296 + RPSI07_RS14660 0.72 +0.2 1,465,297 - RPSI07_RS14660 0.72 -1.0 1,465,479 + -0.9 1,465,479 + -0.8 1,465,479 + +0.4 1,465,479 + -1.2 1,465,497 + -2.1 1,465,677 + -1.0 1,465,726 + -1.4
Or see this region's nucleotide sequence