Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS14660

Experiment: CPG no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS14655 and RPSI07_RS14660 are separated by 352 nucleotidesRPSI07_RS14660 and RPSI07_RS14665 are separated by 245 nucleotidesRPSI07_RS14665 and RPSI07_RS14670 are separated by 10 nucleotides RPSI07_RS14655: RPSI07_RS14655 - malate dehydrogenase, at 1,463,366 to 1,464,355 _RS14655 RPSI07_RS14660: RPSI07_RS14660 - GntR family transcriptional regulator, at 1,464,708 to 1,465,520 _RS14660 RPSI07_RS14665: RPSI07_RS14665 - succinate dehydrogenase, cytochrome b556 subunit, at 1,465,766 to 1,466,176 _RS14665 RPSI07_RS14670: RPSI07_RS14670 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,466,187 to 1,466,552 _RS14670 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1464.501 kb on + strandat 1464.650 kb on - strandat 1464.659 kb on + strandat 1464.707 kb on + strandat 1464.707 kb on + strandat 1464.708 kb on - strandat 1464.825 kb on + strand, within RPSI07_RS14660at 1464.826 kb on - strand, within RPSI07_RS14660at 1464.826 kb on - strand, within RPSI07_RS14660at 1464.922 kb on - strand, within RPSI07_RS14660at 1465.296 kb on + strand, within RPSI07_RS14660at 1465.297 kb on - strand, within RPSI07_RS14660at 1465.479 kb on + strandat 1465.479 kb on + strandat 1465.479 kb on + strandat 1465.479 kb on + strandat 1465.497 kb on + strandat 1465.677 kb on + strandat 1465.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG no stress control
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1,464,501 + +1.9
1,464,650 - +0.4
1,464,659 + +0.4
1,464,707 + -1.0
1,464,707 + +0.8
1,464,708 - -0.8
1,464,825 + RPSI07_RS14660 0.14 -1.6
1,464,826 - RPSI07_RS14660 0.15 -3.4
1,464,826 - RPSI07_RS14660 0.15 +1.8
1,464,922 - RPSI07_RS14660 0.26 +0.8
1,465,296 + RPSI07_RS14660 0.72 +0.2
1,465,297 - RPSI07_RS14660 0.72 -1.0
1,465,479 + -0.9
1,465,479 + -0.8
1,465,479 + +0.4
1,465,479 + -1.2
1,465,497 + -2.1
1,465,677 + -1.0
1,465,726 + -1.4

Or see this region's nucleotide sequence