Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03165 and RPSI07_RS03170 overlap by 4 nucleotides RPSI07_RS03170 and RPSI07_RS03175 overlap by 8 nucleotides RPSI07_RS03175 and RPSI07_RS03180 overlap by 4 nucleotides
RPSI07_RS03165: RPSI07_RS03165 - hypothetical protein, at 867,959 to 869,911
_RS03165
RPSI07_RS03170: RPSI07_RS03170 - acyl carrier protein, at 869,908 to 870,168
_RS03170
RPSI07_RS03175: RPSI07_RS03175 - omega-3 fatty acid desaturase transmembrane protein, at 870,161 to 871,129
_RS03175
RPSI07_RS03180: RPSI07_RS03180 - hypothetical protein, at 871,126 to 872,286
_RS03180
Position (kb) 870
871
872 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 869.369 kb on + strand, within RPSI07_RS03165 at 869.369 kb on + strand, within RPSI07_RS03165 at 869.369 kb on + strand, within RPSI07_RS03165 at 869.369 kb on + strand, within RPSI07_RS03165 at 869.369 kb on + strand, within RPSI07_RS03165 at 869.369 kb on + strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.370 kb on - strand, within RPSI07_RS03165 at 869.454 kb on + strand, within RPSI07_RS03165 at 869.531 kb on + strand, within RPSI07_RS03165 at 869.531 kb on + strand, within RPSI07_RS03165 at 869.531 kb on + strand, within RPSI07_RS03165 at 869.531 kb on + strand, within RPSI07_RS03165 at 869.531 kb on + strand, within RPSI07_RS03165 at 869.532 kb on - strand, within RPSI07_RS03165 at 869.561 kb on + strand, within RPSI07_RS03165 at 869.562 kb on - strand, within RPSI07_RS03165 at 869.562 kb on - strand, within RPSI07_RS03165 at 869.594 kb on + strand, within RPSI07_RS03165 at 869.595 kb on - strand, within RPSI07_RS03165 at 869.595 kb on - strand, within RPSI07_RS03165 at 869.595 kb on - strand, within RPSI07_RS03165 at 869.777 kb on + strand at 869.859 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.194 kb on + strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.195 kb on - strand at 870.290 kb on + strand, within RPSI07_RS03175 at 870.290 kb on + strand, within RPSI07_RS03175 at 870.291 kb on - strand, within RPSI07_RS03175 at 870.291 kb on - strand, within RPSI07_RS03175 at 870.291 kb on - strand, within RPSI07_RS03175 at 870.291 kb on - strand, within RPSI07_RS03175 at 870.501 kb on - strand, within RPSI07_RS03175 at 870.526 kb on + strand, within RPSI07_RS03175 at 870.527 kb on - strand, within RPSI07_RS03175 at 870.527 kb on - strand, within RPSI07_RS03175 at 870.527 kb on - strand, within RPSI07_RS03175 at 870.587 kb on + strand, within RPSI07_RS03175 at 870.650 kb on + strand, within RPSI07_RS03175 at 870.650 kb on + strand, within RPSI07_RS03175 at 870.651 kb on - strand, within RPSI07_RS03175 at 870.651 kb on - strand, within RPSI07_RS03175 at 870.845 kb on + strand, within RPSI07_RS03175 at 870.869 kb on + strand, within RPSI07_RS03175 at 870.869 kb on + strand, within RPSI07_RS03175 at 870.869 kb on + strand, within RPSI07_RS03175 at 870.869 kb on + strand, within RPSI07_RS03175 at 870.870 kb on - strand, within RPSI07_RS03175 at 870.870 kb on - strand, within RPSI07_RS03175 at 870.870 kb on - strand, within RPSI07_RS03175 at 870.870 kb on - strand, within RPSI07_RS03175 at 870.953 kb on - strand, within RPSI07_RS03175 at 870.953 kb on - strand, within RPSI07_RS03175 at 870.959 kb on + strand, within RPSI07_RS03175 at 870.959 kb on + strand, within RPSI07_RS03175 at 870.960 kb on - strand, within RPSI07_RS03175 at 870.960 kb on - strand, within RPSI07_RS03175 at 870.960 kb on - strand, within RPSI07_RS03175 at 870.985 kb on + strand, within RPSI07_RS03175 at 870.986 kb on + strand, within RPSI07_RS03175 at 870.986 kb on + strand, within RPSI07_RS03175 at 870.986 kb on + strand, within RPSI07_RS03175 at 870.987 kb on - strand, within RPSI07_RS03175 at 870.987 kb on - strand, within RPSI07_RS03175 at 870.987 kb on - strand, within RPSI07_RS03175 at 870.987 kb on - strand, within RPSI07_RS03175 at 870.998 kb on + strand, within RPSI07_RS03175 at 870.998 kb on + strand, within RPSI07_RS03175 at 871.043 kb on + strand at 871.044 kb on - strand at 871.044 kb on - strand at 871.058 kb on + strand at 871.059 kb on - strand at 871.059 kb on - strand at 871.059 kb on - strand at 871.082 kb on + strand at 871.082 kb on + strand at 871.082 kb on + strand at 871.082 kb on + strand at 871.083 kb on - strand at 871.083 kb on - strand at 871.237 kb on + strand at 871.273 kb on + strand, within RPSI07_RS03180 at 871.273 kb on + strand, within RPSI07_RS03180 at 871.273 kb on + strand, within RPSI07_RS03180 at 871.274 kb on - strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.411 kb on + strand, within RPSI07_RS03180 at 871.412 kb on - strand, within RPSI07_RS03180 at 871.412 kb on - strand, within RPSI07_RS03180 at 871.412 kb on - strand, within RPSI07_RS03180 at 871.412 kb on - strand, within RPSI07_RS03180 at 871.412 kb on - strand, within RPSI07_RS03180 at 871.412 kb on - strand, within RPSI07_RS03180 at 871.489 kb on + strand, within RPSI07_RS03180 at 871.489 kb on + strand, within RPSI07_RS03180 at 871.489 kb on + strand, within RPSI07_RS03180 at 871.489 kb on + strand, within RPSI07_RS03180 at 871.490 kb on - strand, within RPSI07_RS03180 at 871.490 kb on - strand, within RPSI07_RS03180 at 871.524 kb on + strand, within RPSI07_RS03180 at 871.557 kb on + strand, within RPSI07_RS03180 at 871.557 kb on + strand, within RPSI07_RS03180 at 871.557 kb on + strand, within RPSI07_RS03180 at 871.558 kb on - strand, within RPSI07_RS03180 at 871.558 kb on - strand, within RPSI07_RS03180 at 871.558 kb on - strand, within RPSI07_RS03180 at 871.624 kb on + strand, within RPSI07_RS03180 at 871.624 kb on + strand, within RPSI07_RS03180 at 871.625 kb on - strand, within RPSI07_RS03180 at 871.664 kb on - strand, within RPSI07_RS03180 at 871.664 kb on - strand, within RPSI07_RS03180 at 871.675 kb on + strand, within RPSI07_RS03180 at 871.675 kb on + strand, within RPSI07_RS03180 at 871.675 kb on + strand, within RPSI07_RS03180 at 871.675 kb on + strand, within RPSI07_RS03180 at 871.676 kb on - strand, within RPSI07_RS03180 at 871.676 kb on - strand, within RPSI07_RS03180 at 871.676 kb on - strand, within RPSI07_RS03180 at 871.676 kb on - strand, within RPSI07_RS03180 at 871.705 kb on + strand, within RPSI07_RS03180 at 871.780 kb on - strand, within RPSI07_RS03180 at 871.918 kb on + strand, within RPSI07_RS03180 at 871.918 kb on + strand, within RPSI07_RS03180 at 871.918 kb on + strand, within RPSI07_RS03180 at 871.918 kb on + strand, within RPSI07_RS03180 at 871.919 kb on - strand, within RPSI07_RS03180 at 872.083 kb on + strand, within RPSI07_RS03180 at 872.083 kb on + strand, within RPSI07_RS03180 at 872.083 kb on + strand, within RPSI07_RS03180 at 872.084 kb on - strand, within RPSI07_RS03180 at 872.084 kb on - strand, within RPSI07_RS03180 at 872.084 kb on - strand, within RPSI07_RS03180 at 872.084 kb on - strand, within RPSI07_RS03180 at 872.101 kb on + strand, within RPSI07_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 869,369 + RPSI07_RS03165 0.72 +0.0 869,369 + RPSI07_RS03165 0.72 -0.1 869,369 + RPSI07_RS03165 0.72 -0.1 869,369 + RPSI07_RS03165 0.72 +0.2 869,369 + RPSI07_RS03165 0.72 -0.9 869,369 + RPSI07_RS03165 0.72 -0.3 869,370 - RPSI07_RS03165 0.72 +1.9 869,370 - RPSI07_RS03165 0.72 -0.0 869,370 - RPSI07_RS03165 0.72 +0.2 869,370 - RPSI07_RS03165 0.72 -0.9 869,370 - RPSI07_RS03165 0.72 -0.1 869,370 - RPSI07_RS03165 0.72 -1.4 869,370 - RPSI07_RS03165 0.72 -0.9 869,370 - RPSI07_RS03165 0.72 +0.7 869,454 + RPSI07_RS03165 0.77 -1.1 869,531 + RPSI07_RS03165 0.80 +1.4 869,531 + RPSI07_RS03165 0.80 +0.7 869,531 + RPSI07_RS03165 0.80 -0.6 869,531 + RPSI07_RS03165 0.80 -0.6 869,531 + RPSI07_RS03165 0.80 +0.6 869,532 - RPSI07_RS03165 0.81 +0.3 869,561 + RPSI07_RS03165 0.82 -0.3 869,562 - RPSI07_RS03165 0.82 +1.7 869,562 - RPSI07_RS03165 0.82 -0.7 869,594 + RPSI07_RS03165 0.84 -1.2 869,595 - RPSI07_RS03165 0.84 +1.0 869,595 - RPSI07_RS03165 0.84 +0.5 869,595 - RPSI07_RS03165 0.84 +0.3 869,777 + -1.2 869,859 + +0.4 870,194 + -1.6 870,194 + -0.9 870,194 + +0.5 870,194 + +0.2 870,194 + -0.2 870,194 + -0.1 870,194 + -2.1 870,194 + +0.3 870,194 + +0.2 870,194 + +0.2 870,194 + -0.3 870,194 + -1.1 870,194 + +0.1 870,194 + -1.3 870,194 + +0.1 870,195 - -0.6 870,195 - +1.7 870,195 - -0.7 870,195 - +0.7 870,195 - -0.5 870,195 - +0.6 870,195 - +0.7 870,195 - +0.7 870,195 - +0.7 870,195 - +0.2 870,290 + RPSI07_RS03175 0.13 -0.2 870,290 + RPSI07_RS03175 0.13 -0.4 870,291 - RPSI07_RS03175 0.13 -2.0 870,291 - RPSI07_RS03175 0.13 +1.2 870,291 - RPSI07_RS03175 0.13 -1.0 870,291 - RPSI07_RS03175 0.13 -1.6 870,501 - RPSI07_RS03175 0.35 +0.1 870,526 + RPSI07_RS03175 0.38 +0.9 870,527 - RPSI07_RS03175 0.38 +0.4 870,527 - RPSI07_RS03175 0.38 +1.6 870,527 - RPSI07_RS03175 0.38 +2.4 870,587 + RPSI07_RS03175 0.44 -1.0 870,650 + RPSI07_RS03175 0.50 -1.5 870,650 + RPSI07_RS03175 0.50 +0.1 870,651 - RPSI07_RS03175 0.51 +2.1 870,651 - RPSI07_RS03175 0.51 +0.7 870,845 + RPSI07_RS03175 0.71 +0.0 870,869 + RPSI07_RS03175 0.73 -0.1 870,869 + RPSI07_RS03175 0.73 +0.3 870,869 + RPSI07_RS03175 0.73 +0.3 870,869 + RPSI07_RS03175 0.73 +0.0 870,870 - RPSI07_RS03175 0.73 -1.5 870,870 - RPSI07_RS03175 0.73 -2.2 870,870 - RPSI07_RS03175 0.73 +0.5 870,870 - RPSI07_RS03175 0.73 -0.6 870,953 - RPSI07_RS03175 0.82 -1.3 870,953 - RPSI07_RS03175 0.82 +0.3 870,959 + RPSI07_RS03175 0.82 +0.1 870,959 + RPSI07_RS03175 0.82 +0.3 870,960 - RPSI07_RS03175 0.82 +0.7 870,960 - RPSI07_RS03175 0.82 -0.9 870,960 - RPSI07_RS03175 0.82 -3.8 870,985 + RPSI07_RS03175 0.85 +1.3 870,986 + RPSI07_RS03175 0.85 -1.1 870,986 + RPSI07_RS03175 0.85 +2.5 870,986 + RPSI07_RS03175 0.85 +1.1 870,987 - RPSI07_RS03175 0.85 +0.2 870,987 - RPSI07_RS03175 0.85 +0.9 870,987 - RPSI07_RS03175 0.85 +2.0 870,987 - RPSI07_RS03175 0.85 -0.1 870,998 + RPSI07_RS03175 0.86 -0.3 870,998 + RPSI07_RS03175 0.86 +0.9 871,043 + -1.1 871,044 - -1.3 871,044 - -0.1 871,058 + -1.6 871,059 - +0.3 871,059 - -1.1 871,059 - -0.7 871,082 + -1.6 871,082 + +0.5 871,082 + -0.8 871,082 + +0.5 871,083 - +0.1 871,083 - +0.5 871,237 + +2.5 871,273 + RPSI07_RS03180 0.13 -1.2 871,273 + RPSI07_RS03180 0.13 -0.2 871,273 + RPSI07_RS03180 0.13 +0.6 871,274 - RPSI07_RS03180 0.13 -1.1 871,411 + RPSI07_RS03180 0.25 -0.6 871,411 + RPSI07_RS03180 0.25 -2.4 871,411 + RPSI07_RS03180 0.25 -1.3 871,411 + RPSI07_RS03180 0.25 -1.0 871,411 + RPSI07_RS03180 0.25 -0.7 871,411 + RPSI07_RS03180 0.25 -0.8 871,411 + RPSI07_RS03180 0.25 -0.3 871,412 - RPSI07_RS03180 0.25 -1.7 871,412 - RPSI07_RS03180 0.25 +0.9 871,412 - RPSI07_RS03180 0.25 +0.0 871,412 - RPSI07_RS03180 0.25 +2.5 871,412 - RPSI07_RS03180 0.25 +2.1 871,412 - RPSI07_RS03180 0.25 +0.2 871,489 + RPSI07_RS03180 0.31 -0.4 871,489 + RPSI07_RS03180 0.31 +0.8 871,489 + RPSI07_RS03180 0.31 -1.2 871,489 + RPSI07_RS03180 0.31 -2.0 871,490 - RPSI07_RS03180 0.31 -0.4 871,490 - RPSI07_RS03180 0.31 -0.5 871,524 + RPSI07_RS03180 0.34 +1.0 871,557 + RPSI07_RS03180 0.37 -1.6 871,557 + RPSI07_RS03180 0.37 +1.3 871,557 + RPSI07_RS03180 0.37 -2.5 871,558 - RPSI07_RS03180 0.37 -0.4 871,558 - RPSI07_RS03180 0.37 -0.5 871,558 - RPSI07_RS03180 0.37 +1.3 871,624 + RPSI07_RS03180 0.43 +0.4 871,624 + RPSI07_RS03180 0.43 -0.5 871,625 - RPSI07_RS03180 0.43 -0.5 871,664 - RPSI07_RS03180 0.46 +0.0 871,664 - RPSI07_RS03180 0.46 -0.3 871,675 + RPSI07_RS03180 0.47 +1.0 871,675 + RPSI07_RS03180 0.47 -1.1 871,675 + RPSI07_RS03180 0.47 -0.3 871,675 + RPSI07_RS03180 0.47 +0.2 871,676 - RPSI07_RS03180 0.47 +2.0 871,676 - RPSI07_RS03180 0.47 -0.8 871,676 - RPSI07_RS03180 0.47 +0.5 871,676 - RPSI07_RS03180 0.47 -0.8 871,705 + RPSI07_RS03180 0.50 +0.7 871,780 - RPSI07_RS03180 0.56 -0.0 871,918 + RPSI07_RS03180 0.68 +0.7 871,918 + RPSI07_RS03180 0.68 -0.6 871,918 + RPSI07_RS03180 0.68 -1.2 871,918 + RPSI07_RS03180 0.68 -0.7 871,919 - RPSI07_RS03180 0.68 -2.1 872,083 + RPSI07_RS03180 0.82 -0.2 872,083 + RPSI07_RS03180 0.82 -0.9 872,083 + RPSI07_RS03180 0.82 +0.4 872,084 - RPSI07_RS03180 0.83 +1.6 872,084 - RPSI07_RS03180 0.83 +1.4 872,084 - RPSI07_RS03180 0.83 -1.5 872,084 - RPSI07_RS03180 0.83 -0.2 872,101 + RPSI07_RS03180 0.84 -1.3
Or see this region's nucleotide sequence