Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS02780

Experiment: CPG no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS02775 and RPSI07_RS02780 are separated by 11 nucleotidesRPSI07_RS02780 and RPSI07_RS02785 are separated by 11 nucleotides RPSI07_RS02775: RPSI07_RS02775 - NAD synthetase, at 776,788 to 778,212 _RS02775 RPSI07_RS02780: RPSI07_RS02780 - NAD(P) transhydrogenase subunit alpha, at 778,224 to 778,547 _RS02780 RPSI07_RS02785: RPSI07_RS02785 - NAD(P) transhydrogenase subunit alpha, at 778,559 to 779,689 _RS02785 Position (kb) 778 779Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 777.234 kb on - strand, within RPSI07_RS02775at 777.410 kb on + strand, within RPSI07_RS02775at 777.410 kb on + strand, within RPSI07_RS02775at 777.410 kb on + strand, within RPSI07_RS02775at 777.410 kb on + strand, within RPSI07_RS02775at 777.410 kb on + strand, within RPSI07_RS02775at 777.410 kb on + strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.411 kb on - strand, within RPSI07_RS02775at 777.509 kb on + strand, within RPSI07_RS02775at 777.510 kb on - strand, within RPSI07_RS02775at 777.510 kb on - strand, within RPSI07_RS02775at 777.734 kb on + strand, within RPSI07_RS02775at 777.734 kb on + strand, within RPSI07_RS02775at 777.735 kb on - strand, within RPSI07_RS02775at 777.866 kb on + strand, within RPSI07_RS02775at 777.867 kb on - strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.921 kb on + strand, within RPSI07_RS02775at 777.922 kb on - strand, within RPSI07_RS02775at 777.922 kb on - strand, within RPSI07_RS02775at 777.922 kb on - strand, within RPSI07_RS02775at 777.922 kb on - strand, within RPSI07_RS02775at 777.922 kb on - strand, within RPSI07_RS02775at 777.922 kb on - strand, within RPSI07_RS02775at 778.019 kb on + strand, within RPSI07_RS02775at 778.020 kb on - strand, within RPSI07_RS02775at 778.184 kb on + strandat 778.184 kb on + strandat 778.185 kb on - strandat 778.185 kb on - strandat 778.185 kb on - strandat 778.185 kb on - strandat 778.483 kb on + strand, within RPSI07_RS02780at 778.492 kb on + strand, within RPSI07_RS02780at 778.492 kb on + strand, within RPSI07_RS02780at 778.492 kb on + strand, within RPSI07_RS02780at 778.492 kb on + strand, within RPSI07_RS02780at 778.492 kb on + strand, within RPSI07_RS02780at 778.492 kb on + strand, within RPSI07_RS02780at 778.493 kb on - strand, within RPSI07_RS02780at 778.493 kb on - strand, within RPSI07_RS02780at 778.493 kb on - strand, within RPSI07_RS02780at 778.493 kb on - strand, within RPSI07_RS02780at 778.687 kb on - strand, within RPSI07_RS02785at 778.904 kb on + strand, within RPSI07_RS02785at 779.001 kb on + strand, within RPSI07_RS02785at 779.247 kb on + strand, within RPSI07_RS02785at 779.247 kb on + strand, within RPSI07_RS02785at 779.277 kb on + strand, within RPSI07_RS02785at 779.278 kb on - strand, within RPSI07_RS02785at 779.278 kb on - strand, within RPSI07_RS02785at 779.541 kb on + strand, within RPSI07_RS02785at 779.541 kb on + strand, within RPSI07_RS02785at 779.541 kb on + strand, within RPSI07_RS02785at 779.541 kb on + strand, within RPSI07_RS02785at 779.541 kb on + strand, within RPSI07_RS02785at 779.541 kb on + strand, within RPSI07_RS02785at 779.542 kb on - strand, within RPSI07_RS02785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG no stress control
remove
777,234 - RPSI07_RS02775 0.31 -0.8
777,410 + RPSI07_RS02775 0.44 +1.3
777,410 + RPSI07_RS02775 0.44 -1.5
777,410 + RPSI07_RS02775 0.44 +0.0
777,410 + RPSI07_RS02775 0.44 -0.3
777,410 + RPSI07_RS02775 0.44 -1.1
777,410 + RPSI07_RS02775 0.44 -0.2
777,411 - RPSI07_RS02775 0.44 +0.7
777,411 - RPSI07_RS02775 0.44 +0.1
777,411 - RPSI07_RS02775 0.44 +0.6
777,411 - RPSI07_RS02775 0.44 +0.4
777,411 - RPSI07_RS02775 0.44 -2.0
777,411 - RPSI07_RS02775 0.44 +1.1
777,411 - RPSI07_RS02775 0.44 +3.2
777,411 - RPSI07_RS02775 0.44 -0.3
777,509 + RPSI07_RS02775 0.51 -0.3
777,510 - RPSI07_RS02775 0.51 +0.1
777,510 - RPSI07_RS02775 0.51 +1.2
777,734 + RPSI07_RS02775 0.66 -0.2
777,734 + RPSI07_RS02775 0.66 +0.7
777,735 - RPSI07_RS02775 0.66 -0.7
777,866 + RPSI07_RS02775 0.76 -0.2
777,867 - RPSI07_RS02775 0.76 -1.4
777,921 + RPSI07_RS02775 0.80 -1.2
777,921 + RPSI07_RS02775 0.80 +0.1
777,921 + RPSI07_RS02775 0.80 +3.0
777,921 + RPSI07_RS02775 0.80 -4.0
777,921 + RPSI07_RS02775 0.80 -1.3
777,921 + RPSI07_RS02775 0.80 -0.2
777,921 + RPSI07_RS02775 0.80 -0.7
777,921 + RPSI07_RS02775 0.80 -1.5
777,922 - RPSI07_RS02775 0.80 +0.3
777,922 - RPSI07_RS02775 0.80 -0.3
777,922 - RPSI07_RS02775 0.80 -2.0
777,922 - RPSI07_RS02775 0.80 -0.3
777,922 - RPSI07_RS02775 0.80 -0.4
777,922 - RPSI07_RS02775 0.80 -0.0
778,019 + RPSI07_RS02775 0.86 -1.5
778,020 - RPSI07_RS02775 0.86 -2.3
778,184 + -1.8
778,184 + +0.5
778,185 - -0.3
778,185 - -0.8
778,185 - -0.3
778,185 - -2.9
778,483 + RPSI07_RS02780 0.80 -0.4
778,492 + RPSI07_RS02780 0.83 +2.4
778,492 + RPSI07_RS02780 0.83 -0.2
778,492 + RPSI07_RS02780 0.83 +0.7
778,492 + RPSI07_RS02780 0.83 -0.3
778,492 + RPSI07_RS02780 0.83 -0.5
778,492 + RPSI07_RS02780 0.83 -0.6
778,493 - RPSI07_RS02780 0.83 +0.2
778,493 - RPSI07_RS02780 0.83 -1.1
778,493 - RPSI07_RS02780 0.83 -0.0
778,493 - RPSI07_RS02780 0.83 -5.5
778,687 - RPSI07_RS02785 0.11 +1.7
778,904 + RPSI07_RS02785 0.31 +0.3
779,001 + RPSI07_RS02785 0.39 -1.0
779,247 + RPSI07_RS02785 0.61 -0.5
779,247 + RPSI07_RS02785 0.61 +0.1
779,277 + RPSI07_RS02785 0.63 +0.3
779,278 - RPSI07_RS02785 0.64 +0.0
779,278 - RPSI07_RS02785 0.64 +1.2
779,541 + RPSI07_RS02785 0.87 -1.5
779,541 + RPSI07_RS02785 0.87 -2.9
779,541 + RPSI07_RS02785 0.87 +0.3
779,541 + RPSI07_RS02785 0.87 -0.1
779,541 + RPSI07_RS02785 0.87 -1.5
779,541 + RPSI07_RS02785 0.87 +0.9
779,542 - RPSI07_RS02785 0.87 +0.1

Or see this region's nucleotide sequence