Strain Fitness in Escherichia coli BL21 around ECD_04036

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04034 and ECD_04035 overlap by 29 nucleotidesECD_04035 and ECD_04036 are separated by 18 nucleotidesECD_04036 and ECD_04037 are separated by 9 nucleotides ECD_04034: ECD_04034 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase, at 4,300,586 to 4,302,133 _04034 ECD_04035: ECD_04035 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein, at 4,302,105 to 4,302,566 _04035 ECD_04036: ECD_04036 - N-acetylmuramoyl-l-alanine amidase II, at 4,302,585 to 4,303,922 _04036 ECD_04037: ECD_04037 - methyl-directed mismatch repair protein, at 4,303,932 to 4,305,779 _04037 Position (kb) 4302 4303 4304Strain fitness (log2 ratio) -1 0 1at 4301.733 kb on + strand, within ECD_04034at 4301.734 kb on - strand, within ECD_04034at 4301.734 kb on - strand, within ECD_04034at 4301.769 kb on + strand, within ECD_04034at 4301.769 kb on + strand, within ECD_04034at 4301.770 kb on - strand, within ECD_04034at 4301.770 kb on - strand, within ECD_04034at 4301.790 kb on + strand, within ECD_04034at 4301.790 kb on + strand, within ECD_04034at 4301.791 kb on - strand, within ECD_04034at 4301.860 kb on - strand, within ECD_04034at 4301.866 kb on + strand, within ECD_04034at 4301.926 kb on + strand, within ECD_04034at 4301.926 kb on + strand, within ECD_04034at 4302.009 kb on + strandat 4302.066 kb on + strandat 4302.589 kb on + strandat 4302.589 kb on + strandat 4302.589 kb on + strandat 4302.590 kb on - strandat 4302.590 kb on - strandat 4302.591 kb on + strandat 4302.591 kb on + strandat 4302.592 kb on - strandat 4302.666 kb on - strandat 4302.872 kb on - strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.940 kb on - strand, within ECD_04036at 4302.940 kb on - strand, within ECD_04036at 4303.080 kb on - strand, within ECD_04036at 4303.106 kb on + strand, within ECD_04036at 4303.107 kb on - strand, within ECD_04036at 4303.107 kb on - strand, within ECD_04036at 4303.110 kb on - strand, within ECD_04036at 4303.110 kb on - strand, within ECD_04036at 4303.154 kb on + strand, within ECD_04036at 4303.160 kb on + strand, within ECD_04036at 4303.293 kb on - strand, within ECD_04036at 4303.325 kb on + strand, within ECD_04036at 4303.325 kb on + strand, within ECD_04036at 4303.358 kb on + strand, within ECD_04036at 4303.358 kb on + strand, within ECD_04036at 4303.359 kb on - strand, within ECD_04036at 4303.559 kb on - strand, within ECD_04036at 4303.603 kb on + strand, within ECD_04036at 4303.608 kb on + strand, within ECD_04036at 4303.608 kb on + strand, within ECD_04036at 4303.608 kb on + strand, within ECD_04036at 4303.615 kb on + strand, within ECD_04036at 4303.616 kb on - strand, within ECD_04036at 4303.625 kb on + strand, within ECD_04036at 4303.657 kb on + strand, within ECD_04036at 4303.657 kb on + strand, within ECD_04036at 4303.657 kb on + strand, within ECD_04036at 4303.658 kb on - strand, within ECD_04036at 4303.658 kb on - strand, within ECD_04036at 4303.661 kb on + strand, within ECD_04036at 4303.662 kb on - strand, within ECD_04036at 4303.740 kb on - strand, within ECD_04036at 4303.810 kb on - strandat 4303.810 kb on - strandat 4303.887 kb on - strandat 4303.920 kb on + strandat 4303.949 kb on - strandat 4304.054 kb on + strandat 4304.055 kb on - strandat 4304.058 kb on + strandat 4304.301 kb on + strand, within ECD_04037at 4304.301 kb on + strand, within ECD_04037at 4304.332 kb on + strand, within ECD_04037at 4304.385 kb on + strand, within ECD_04037at 4304.385 kb on + strand, within ECD_04037at 4304.386 kb on - strand, within ECD_04037at 4304.435 kb on + strand, within ECD_04037at 4304.567 kb on - strand, within ECD_04037at 4304.695 kb on - strand, within ECD_04037at 4304.700 kb on + strand, within ECD_04037at 4304.802 kb on + strand, within ECD_04037at 4304.803 kb on - strand, within ECD_04037at 4304.894 kb on + strand, within ECD_04037at 4304.898 kb on + strand, within ECD_04037at 4304.899 kb on - strand, within ECD_04037at 4304.920 kb on + strand, within ECD_04037at 4304.920 kb on + strand, within ECD_04037at 4304.921 kb on - strand, within ECD_04037

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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4,301,733 + ECD_04034 0.74 -0.5
4,301,734 - ECD_04034 0.74 -0.9
4,301,734 - ECD_04034 0.74 +0.7
4,301,769 + ECD_04034 0.76 -0.6
4,301,769 + ECD_04034 0.76 +1.4
4,301,770 - ECD_04034 0.76 +0.5
4,301,770 - ECD_04034 0.76 -0.5
4,301,790 + ECD_04034 0.78 +1.0
4,301,790 + ECD_04034 0.78 -0.5
4,301,791 - ECD_04034 0.78 -0.2
4,301,860 - ECD_04034 0.82 +0.3
4,301,866 + ECD_04034 0.83 -0.2
4,301,926 + ECD_04034 0.87 -0.3
4,301,926 + ECD_04034 0.87 +0.3
4,302,009 + -0.6
4,302,066 + -1.0
4,302,589 + +0.2
4,302,589 + -0.1
4,302,589 + -0.3
4,302,590 - +0.1
4,302,590 - -0.5
4,302,591 + +0.0
4,302,591 + -0.4
4,302,592 - +0.3
4,302,666 - -1.0
4,302,872 - ECD_04036 0.21 -0.8
4,302,939 + ECD_04036 0.26 -1.3
4,302,939 + ECD_04036 0.26 -0.5
4,302,939 + ECD_04036 0.26 -0.3
4,302,939 + ECD_04036 0.26 +0.4
4,302,940 - ECD_04036 0.27 -0.6
4,302,940 - ECD_04036 0.27 +0.2
4,303,080 - ECD_04036 0.37 -0.2
4,303,106 + ECD_04036 0.39 -1.1
4,303,107 - ECD_04036 0.39 -0.2
4,303,107 - ECD_04036 0.39 +0.0
4,303,110 - ECD_04036 0.39 -0.7
4,303,110 - ECD_04036 0.39 +0.8
4,303,154 + ECD_04036 0.43 -1.0
4,303,160 + ECD_04036 0.43 -1.2
4,303,293 - ECD_04036 0.53 -0.2
4,303,325 + ECD_04036 0.55 +0.2
4,303,325 + ECD_04036 0.55 -0.3
4,303,358 + ECD_04036 0.58 -0.3
4,303,358 + ECD_04036 0.58 -0.3
4,303,359 - ECD_04036 0.58 +0.6
4,303,559 - ECD_04036 0.73 -0.1
4,303,603 + ECD_04036 0.76 +0.0
4,303,608 + ECD_04036 0.76 +0.3
4,303,608 + ECD_04036 0.76 +0.1
4,303,608 + ECD_04036 0.76 +0.0
4,303,615 + ECD_04036 0.77 -0.5
4,303,616 - ECD_04036 0.77 +0.2
4,303,625 + ECD_04036 0.78 -0.1
4,303,657 + ECD_04036 0.80 -0.5
4,303,657 + ECD_04036 0.80 +1.2
4,303,657 + ECD_04036 0.80 -0.2
4,303,658 - ECD_04036 0.80 -0.5
4,303,658 - ECD_04036 0.80 -0.8
4,303,661 + ECD_04036 0.80 +0.7
4,303,662 - ECD_04036 0.80 +0.0
4,303,740 - ECD_04036 0.86 +0.0
4,303,810 - +0.3
4,303,810 - +0.9
4,303,887 - -0.3
4,303,920 + +1.1
4,303,949 - +0.1
4,304,054 + -0.7
4,304,055 - +0.3
4,304,058 + +0.1
4,304,301 + ECD_04037 0.20 +0.0
4,304,301 + ECD_04037 0.20 -0.9
4,304,332 + ECD_04037 0.22 -0.3
4,304,385 + ECD_04037 0.25 -0.7
4,304,385 + ECD_04037 0.25 -0.5
4,304,386 - ECD_04037 0.25 -0.4
4,304,435 + ECD_04037 0.27 -1.0
4,304,567 - ECD_04037 0.34 +0.5
4,304,695 - ECD_04037 0.41 +0.1
4,304,700 + ECD_04037 0.42 -0.2
4,304,802 + ECD_04037 0.47 -0.2
4,304,803 - ECD_04037 0.47 +0.3
4,304,894 + ECD_04037 0.52 +0.3
4,304,898 + ECD_04037 0.52 +0.2
4,304,899 - ECD_04037 0.52 -0.3
4,304,920 + ECD_04037 0.53 +0.4
4,304,920 + ECD_04037 0.53 -0.1
4,304,921 - ECD_04037 0.54 -0.8

Or see this region's nucleotide sequence