Strain Fitness in Escherichia coli BL21 around ECD_03760

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03759 and ECD_03760 are separated by 90 nucleotidesECD_03760 and ECD_03761 are separated by 66 nucleotides ECD_03759: ECD_03759 - MFS transporter family protein, at 3,968,945 to 3,970,210 _03759 ECD_03760: ECD_03760 - outer membrane porin L; putative sulfolipid porin, at 3,970,301 to 3,970,993 _03760 ECD_03761: ECD_03761 - putative sulfoquinovose importer, at 3,971,060 to 3,972,463 _03761 Position (kb) 3970 3971Strain fitness (log2 ratio) -1 0 1 2at 3969.415 kb on + strand, within ECD_03759at 3969.464 kb on + strand, within ECD_03759at 3969.604 kb on + strand, within ECD_03759at 3969.648 kb on - strand, within ECD_03759at 3969.648 kb on - strand, within ECD_03759at 3969.689 kb on + strand, within ECD_03759at 3969.690 kb on - strand, within ECD_03759at 3969.690 kb on - strand, within ECD_03759at 3969.694 kb on - strand, within ECD_03759at 3969.694 kb on - strand, within ECD_03759at 3969.694 kb on - strand, within ECD_03759at 3969.738 kb on - strand, within ECD_03759at 3969.810 kb on - strand, within ECD_03759at 3969.810 kb on - strand, within ECD_03759at 3969.810 kb on - strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.813 kb on + strand, within ECD_03759at 3969.814 kb on - strand, within ECD_03759at 3969.818 kb on + strand, within ECD_03759at 3969.818 kb on + strand, within ECD_03759at 3969.818 kb on + strand, within ECD_03759at 3969.819 kb on - strand, within ECD_03759at 3969.849 kb on + strand, within ECD_03759at 3969.904 kb on + strand, within ECD_03759at 3969.905 kb on - strand, within ECD_03759at 3969.932 kb on - strand, within ECD_03759at 3970.018 kb on + strand, within ECD_03759at 3970.018 kb on + strand, within ECD_03759at 3970.062 kb on - strand, within ECD_03759at 3970.075 kb on - strand, within ECD_03759at 3970.169 kb on - strandat 3970.169 kb on - strandat 3970.181 kb on - strandat 3970.208 kb on + strandat 3970.208 kb on + strandat 3970.209 kb on - strandat 3970.209 kb on - strandat 3970.209 kb on - strandat 3970.212 kb on + strandat 3970.278 kb on - strandat 3970.312 kb on - strandat 3970.370 kb on + strandat 3970.780 kb on + strand, within ECD_03760at 3970.871 kb on + strand, within ECD_03760at 3970.871 kb on + strand, within ECD_03760at 3970.905 kb on + strand, within ECD_03760at 3970.906 kb on - strand, within ECD_03760at 3970.906 kb on - strand, within ECD_03760at 3970.906 kb on - strand, within ECD_03760at 3971.061 kb on + strandat 3971.164 kb on - strandat 3971.293 kb on + strand, within ECD_03761at 3971.294 kb on - strand, within ECD_03761at 3971.345 kb on - strand, within ECD_03761at 3971.534 kb on + strand, within ECD_03761at 3971.656 kb on + strand, within ECD_03761at 3971.671 kb on - strand, within ECD_03761at 3971.679 kb on + strand, within ECD_03761at 3971.682 kb on + strand, within ECD_03761at 3971.800 kb on + strand, within ECD_03761at 3971.826 kb on + strand, within ECD_03761at 3971.847 kb on + strand, within ECD_03761at 3971.887 kb on + strand, within ECD_03761at 3971.887 kb on + strand, within ECD_03761at 3971.888 kb on - strand, within ECD_03761at 3971.972 kb on + strand, within ECD_03761

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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3,969,415 + ECD_03759 0.37 -0.3
3,969,464 + ECD_03759 0.41 -0.8
3,969,604 + ECD_03759 0.52 +0.6
3,969,648 - ECD_03759 0.56 +0.8
3,969,648 - ECD_03759 0.56 +0.8
3,969,689 + ECD_03759 0.59 +1.5
3,969,690 - ECD_03759 0.59 -0.1
3,969,690 - ECD_03759 0.59 +0.8
3,969,694 - ECD_03759 0.59 -0.5
3,969,694 - ECD_03759 0.59 +0.3
3,969,694 - ECD_03759 0.59 +0.4
3,969,738 - ECD_03759 0.63 +0.5
3,969,810 - ECD_03759 0.68 +0.8
3,969,810 - ECD_03759 0.68 -1.3
3,969,810 - ECD_03759 0.68 -0.4
3,969,813 + ECD_03759 0.69 +1.8
3,969,813 + ECD_03759 0.69 -0.1
3,969,813 + ECD_03759 0.69 +1.5
3,969,813 + ECD_03759 0.69 +1.0
3,969,813 + ECD_03759 0.69 +0.6
3,969,813 + ECD_03759 0.69 +0.3
3,969,813 + ECD_03759 0.69 -0.1
3,969,814 - ECD_03759 0.69 +0.4
3,969,818 + ECD_03759 0.69 +0.8
3,969,818 + ECD_03759 0.69 +0.2
3,969,818 + ECD_03759 0.69 +0.7
3,969,819 - ECD_03759 0.69 -0.9
3,969,849 + ECD_03759 0.71 -0.3
3,969,904 + ECD_03759 0.76 +0.0
3,969,905 - ECD_03759 0.76 +1.0
3,969,932 - ECD_03759 0.78 +0.0
3,970,018 + ECD_03759 0.85 +0.2
3,970,018 + ECD_03759 0.85 +0.3
3,970,062 - ECD_03759 0.88 -0.4
3,970,075 - ECD_03759 0.89 -0.0
3,970,169 - -0.4
3,970,169 - +1.2
3,970,181 - -0.3
3,970,208 + -0.5
3,970,208 + +0.3
3,970,209 - -0.4
3,970,209 - -0.7
3,970,209 - +0.6
3,970,212 + -0.1
3,970,278 - +0.1
3,970,312 - -0.8
3,970,370 + -1.0
3,970,780 + ECD_03760 0.69 -0.7
3,970,871 + ECD_03760 0.82 +0.2
3,970,871 + ECD_03760 0.82 -1.1
3,970,905 + ECD_03760 0.87 -0.3
3,970,906 - ECD_03760 0.87 -0.7
3,970,906 - ECD_03760 0.87 -0.3
3,970,906 - ECD_03760 0.87 -0.2
3,971,061 + -0.1
3,971,164 - -0.7
3,971,293 + ECD_03761 0.17 -0.8
3,971,294 - ECD_03761 0.17 +0.5
3,971,345 - ECD_03761 0.20 +0.7
3,971,534 + ECD_03761 0.34 +0.9
3,971,656 + ECD_03761 0.42 +0.8
3,971,671 - ECD_03761 0.44 -0.8
3,971,679 + ECD_03761 0.44 +0.5
3,971,682 + ECD_03761 0.44 +0.2
3,971,800 + ECD_03761 0.53 -0.4
3,971,826 + ECD_03761 0.55 -0.7
3,971,847 + ECD_03761 0.56 +0.6
3,971,887 + ECD_03761 0.59 -0.9
3,971,887 + ECD_03761 0.59 -0.6
3,971,888 - ECD_03761 0.59 -0.8
3,971,972 + ECD_03761 0.65 +0.8

Or see this region's nucleotide sequence