Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03125 and ECD_03126 are separated by 538 nucleotides ECD_03126 and ECD_03127 are separated by 67 nucleotides
ECD_03125: ECD_03125 - putative outer membrane protein, at 3,279,546 to 3,279,767
_03125
ECD_03126: ECD_03126 - putative amino-acid transporter subunit, at 3,280,306 to 3,281,223
_03126
ECD_03127: ECD_03127 - putative amino acid ABC transporter permease, at 3,281,291 to 3,282,472
_03127
Position (kb)
3280
3281
3282 Strain fitness (log2 ratio)
-2
-1
0
1 at 3279.497 kb on + strand at 3279.506 kb on + strand at 3279.663 kb on - strand, within ECD_03125 at 3279.811 kb on - strand at 3279.817 kb on - strand at 3279.821 kb on - strand at 3279.850 kb on + strand at 3279.866 kb on + strand at 3280.142 kb on + strand at 3280.165 kb on + strand at 3280.168 kb on - strand at 3280.197 kb on + strand at 3280.386 kb on + strand at 3280.438 kb on + strand, within ECD_03126 at 3280.506 kb on + strand, within ECD_03126 at 3280.555 kb on - strand, within ECD_03126 at 3280.567 kb on + strand, within ECD_03126 at 3280.610 kb on + strand, within ECD_03126 at 3280.704 kb on + strand, within ECD_03126 at 3280.711 kb on + strand, within ECD_03126 at 3280.711 kb on + strand, within ECD_03126 at 3280.711 kb on + strand, within ECD_03126 at 3280.805 kb on - strand, within ECD_03126 at 3280.823 kb on + strand, within ECD_03126 at 3280.860 kb on + strand, within ECD_03126 at 3280.861 kb on - strand, within ECD_03126 at 3281.034 kb on + strand, within ECD_03126 at 3281.073 kb on + strand, within ECD_03126 at 3281.073 kb on + strand, within ECD_03126 at 3281.073 kb on + strand, within ECD_03126 at 3281.073 kb on + strand, within ECD_03126 at 3281.073 kb on + strand, within ECD_03126 at 3281.074 kb on - strand, within ECD_03126 at 3281.074 kb on - strand, within ECD_03126 at 3281.083 kb on + strand, within ECD_03126 at 3281.083 kb on + strand, within ECD_03126 at 3281.083 kb on + strand, within ECD_03126 at 3281.084 kb on - strand, within ECD_03126 at 3281.085 kb on + strand, within ECD_03126 at 3281.203 kb on + strand at 3281.290 kb on + strand at 3281.290 kb on + strand at 3281.291 kb on - strand at 3281.291 kb on - strand at 3281.529 kb on - strand, within ECD_03127 at 3281.543 kb on - strand, within ECD_03127 at 3281.553 kb on + strand, within ECD_03127 at 3281.584 kb on + strand, within ECD_03127 at 3281.584 kb on + strand, within ECD_03127 at 3281.585 kb on - strand, within ECD_03127 at 3281.686 kb on + strand, within ECD_03127 at 3281.689 kb on + strand, within ECD_03127 at 3281.720 kb on + strand, within ECD_03127 at 3281.721 kb on - strand, within ECD_03127 at 3281.805 kb on - strand, within ECD_03127 at 3281.806 kb on + strand, within ECD_03127 at 3281.836 kb on + strand, within ECD_03127 at 3281.836 kb on + strand, within ECD_03127 at 3281.836 kb on + strand, within ECD_03127 at 3281.868 kb on + strand, within ECD_03127 at 3281.868 kb on + strand, within ECD_03127 at 3281.869 kb on - strand, within ECD_03127 at 3281.869 kb on - strand, within ECD_03127 at 3281.914 kb on - strand, within ECD_03127 at 3281.914 kb on - strand, within ECD_03127 at 3281.976 kb on + strand, within ECD_03127 at 3282.006 kb on + strand, within ECD_03127 at 3282.028 kb on - strand, within ECD_03127 at 3282.101 kb on + strand, within ECD_03127 at 3282.101 kb on + strand, within ECD_03127 at 3282.104 kb on - strand, within ECD_03127 at 3282.104 kb on - strand, within ECD_03127 at 3282.104 kb on - strand, within ECD_03127 at 3282.104 kb on - strand, within ECD_03127 at 3282.115 kb on + strand, within ECD_03127
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 3,279,497 + +0.7 3,279,506 + +0.1 3,279,663 - ECD_03125 0.53 +1.0 3,279,811 - +0.8 3,279,817 - -2.2 3,279,821 - +0.6 3,279,850 + +0.3 3,279,866 + -0.8 3,280,142 + +0.2 3,280,165 + +0.2 3,280,168 - +0.2 3,280,197 + +1.2 3,280,386 + -1.3 3,280,438 + ECD_03126 0.14 +0.0 3,280,506 + ECD_03126 0.22 +0.9 3,280,555 - ECD_03126 0.27 +0.5 3,280,567 + ECD_03126 0.28 -2.3 3,280,610 + ECD_03126 0.33 -2.2 3,280,704 + ECD_03126 0.43 +0.2 3,280,711 + ECD_03126 0.44 +0.3 3,280,711 + ECD_03126 0.44 -0.1 3,280,711 + ECD_03126 0.44 -0.3 3,280,805 - ECD_03126 0.54 +1.0 3,280,823 + ECD_03126 0.56 +0.3 3,280,860 + ECD_03126 0.60 +0.8 3,280,861 - ECD_03126 0.60 -0.3 3,281,034 + ECD_03126 0.79 +0.0 3,281,073 + ECD_03126 0.84 -0.7 3,281,073 + ECD_03126 0.84 +0.0 3,281,073 + ECD_03126 0.84 +0.3 3,281,073 + ECD_03126 0.84 -0.1 3,281,073 + ECD_03126 0.84 +0.2 3,281,074 - ECD_03126 0.84 +1.1 3,281,074 - ECD_03126 0.84 +0.9 3,281,083 + ECD_03126 0.85 +0.4 3,281,083 + ECD_03126 0.85 +0.9 3,281,083 + ECD_03126 0.85 +0.3 3,281,084 - ECD_03126 0.85 +1.2 3,281,085 + ECD_03126 0.85 +0.8 3,281,203 + +0.6 3,281,290 + +1.5 3,281,290 + +0.9 3,281,291 - -1.3 3,281,291 - -0.6 3,281,529 - ECD_03127 0.20 +0.1 3,281,543 - ECD_03127 0.21 -0.3 3,281,553 + ECD_03127 0.22 +0.0 3,281,584 + ECD_03127 0.25 +1.3 3,281,584 + ECD_03127 0.25 -0.4 3,281,585 - ECD_03127 0.25 -1.1 3,281,686 + ECD_03127 0.33 -0.5 3,281,689 + ECD_03127 0.34 +1.3 3,281,720 + ECD_03127 0.36 +0.3 3,281,721 - ECD_03127 0.36 -0.5 3,281,805 - ECD_03127 0.43 -1.1 3,281,806 + ECD_03127 0.44 -0.3 3,281,836 + ECD_03127 0.46 -0.2 3,281,836 + ECD_03127 0.46 +1.5 3,281,836 + ECD_03127 0.46 +0.3 3,281,868 + ECD_03127 0.49 -0.2 3,281,868 + ECD_03127 0.49 -1.2 3,281,869 - ECD_03127 0.49 -0.5 3,281,869 - ECD_03127 0.49 -0.2 3,281,914 - ECD_03127 0.53 +0.4 3,281,914 - ECD_03127 0.53 -0.1 3,281,976 + ECD_03127 0.58 +0.4 3,282,006 + ECD_03127 0.60 +0.6 3,282,028 - ECD_03127 0.62 -1.9 3,282,101 + ECD_03127 0.69 +0.5 3,282,101 + ECD_03127 0.69 -0.9 3,282,104 - ECD_03127 0.69 -1.0 3,282,104 - ECD_03127 0.69 +0.3 3,282,104 - ECD_03127 0.69 -0.6 3,282,104 - ECD_03127 0.69 +0.3 3,282,115 + ECD_03127 0.70 -0.3
Or see this region's nucleotide sequence