Strain Fitness in Escherichia coli BL21 around ECD_02863

Experiment: Control_TnJ

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02861 and ECD_02862 are separated by 173 nucleotidesECD_02862 and ECD_02863 are separated by 48 nucleotidesECD_02863 and ECD_02864 are separated by 291 nucleotides ECD_02861: ECD_02861 - putative ATP-binding protein, at 3,000,678 to 3,001,391 _02861 ECD_02862: ECD_02862 - putative ATP-binding protein, at 3,001,565 to 3,002,257 _02862 ECD_02863: ECD_02863 - phosphate transporter, at 3,002,306 to 3,003,805 _02863 ECD_02864: ECD_02864 - glutathionylspermidine amidase and glutathionylspermidine synthetase, at 3,004,097 to 3,005,956 _02864 Position (kb) 3002 3003 3004Strain fitness (log2 ratio) -1 0 1at 3001.333 kb on - strandat 3001.380 kb on - strandat 3001.750 kb on - strand, within ECD_02862at 3001.818 kb on + strand, within ECD_02862at 3001.861 kb on + strand, within ECD_02862at 3001.862 kb on - strand, within ECD_02862at 3001.935 kb on - strand, within ECD_02862at 3001.942 kb on + strand, within ECD_02862at 3001.957 kb on + strand, within ECD_02862at 3001.957 kb on + strand, within ECD_02862at 3001.957 kb on + strand, within ECD_02862at 3001.958 kb on - strand, within ECD_02862at 3002.006 kb on - strand, within ECD_02862at 3002.006 kb on - strand, within ECD_02862at 3002.032 kb on + strand, within ECD_02862at 3002.033 kb on - strand, within ECD_02862at 3002.033 kb on - strand, within ECD_02862at 3002.368 kb on + strandat 3002.369 kb on - strandat 3002.405 kb on - strandat 3002.405 kb on - strandat 3002.490 kb on + strand, within ECD_02863at 3002.490 kb on + strand, within ECD_02863at 3002.491 kb on - strand, within ECD_02863at 3002.547 kb on + strand, within ECD_02863at 3002.547 kb on + strand, within ECD_02863at 3002.547 kb on + strand, within ECD_02863at 3002.548 kb on - strand, within ECD_02863at 3002.637 kb on - strand, within ECD_02863at 3002.678 kb on + strand, within ECD_02863at 3002.678 kb on + strand, within ECD_02863at 3002.679 kb on - strand, within ECD_02863at 3002.683 kb on + strand, within ECD_02863at 3002.776 kb on + strand, within ECD_02863at 3002.776 kb on + strand, within ECD_02863at 3002.777 kb on - strand, within ECD_02863at 3002.777 kb on - strand, within ECD_02863at 3002.777 kb on - strand, within ECD_02863at 3002.830 kb on + strand, within ECD_02863at 3002.831 kb on - strand, within ECD_02863at 3002.852 kb on - strand, within ECD_02863at 3002.864 kb on - strand, within ECD_02863at 3002.875 kb on + strand, within ECD_02863at 3002.876 kb on - strand, within ECD_02863at 3002.903 kb on + strand, within ECD_02863at 3002.903 kb on + strand, within ECD_02863at 3002.988 kb on + strand, within ECD_02863at 3002.988 kb on + strand, within ECD_02863at 3002.989 kb on - strand, within ECD_02863at 3002.989 kb on - strand, within ECD_02863at 3002.989 kb on - strand, within ECD_02863at 3003.026 kb on - strand, within ECD_02863at 3003.050 kb on - strand, within ECD_02863at 3003.172 kb on + strand, within ECD_02863at 3003.172 kb on + strand, within ECD_02863at 3003.172 kb on + strand, within ECD_02863at 3003.173 kb on - strand, within ECD_02863at 3003.173 kb on - strand, within ECD_02863at 3003.238 kb on + strand, within ECD_02863at 3003.238 kb on + strand, within ECD_02863at 3003.238 kb on + strand, within ECD_02863at 3003.284 kb on + strand, within ECD_02863at 3003.366 kb on - strand, within ECD_02863at 3003.491 kb on - strand, within ECD_02863at 3003.572 kb on - strand, within ECD_02863at 3003.585 kb on + strand, within ECD_02863at 3003.586 kb on - strand, within ECD_02863at 3003.595 kb on + strand, within ECD_02863at 3003.596 kb on - strand, within ECD_02863at 3003.675 kb on + strandat 3003.759 kb on - strandat 3004.087 kb on - strandat 3004.096 kb on - strandat 3004.204 kb on + strandat 3004.204 kb on + strandat 3004.204 kb on + strandat 3004.205 kb on - strandat 3004.205 kb on - strandat 3004.205 kb on - strandat 3004.218 kb on + strandat 3004.219 kb on - strandat 3004.219 kb on - strandat 3004.257 kb on + strandat 3004.257 kb on + strandat 3004.724 kb on - strand, within ECD_02864at 3004.789 kb on + strand, within ECD_02864

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
remove
3,001,333 - +0.1
3,001,380 - -1.4
3,001,750 - ECD_02862 0.27 -0.0
3,001,818 + ECD_02862 0.37 +0.6
3,001,861 + ECD_02862 0.43 +0.7
3,001,862 - ECD_02862 0.43 -0.2
3,001,935 - ECD_02862 0.53 +0.9
3,001,942 + ECD_02862 0.54 +1.2
3,001,957 + ECD_02862 0.57 -0.2
3,001,957 + ECD_02862 0.57 +1.2
3,001,957 + ECD_02862 0.57 +1.0
3,001,958 - ECD_02862 0.57 +1.6
3,002,006 - ECD_02862 0.64 +0.3
3,002,006 - ECD_02862 0.64 +0.3
3,002,032 + ECD_02862 0.67 -0.0
3,002,033 - ECD_02862 0.68 +0.3
3,002,033 - ECD_02862 0.68 -0.0
3,002,368 + +1.3
3,002,369 - +0.2
3,002,405 - -1.5
3,002,405 - +0.1
3,002,490 + ECD_02863 0.12 -0.4
3,002,490 + ECD_02863 0.12 -0.7
3,002,491 - ECD_02863 0.12 -0.4
3,002,547 + ECD_02863 0.16 -1.3
3,002,547 + ECD_02863 0.16 +0.1
3,002,547 + ECD_02863 0.16 +0.2
3,002,548 - ECD_02863 0.16 -0.0
3,002,637 - ECD_02863 0.22 +0.4
3,002,678 + ECD_02863 0.25 +0.3
3,002,678 + ECD_02863 0.25 -0.1
3,002,679 - ECD_02863 0.25 +0.4
3,002,683 + ECD_02863 0.25 -1.0
3,002,776 + ECD_02863 0.31 -1.2
3,002,776 + ECD_02863 0.31 +0.7
3,002,777 - ECD_02863 0.31 -1.5
3,002,777 - ECD_02863 0.31 -1.1
3,002,777 - ECD_02863 0.31 +0.1
3,002,830 + ECD_02863 0.35 -0.9
3,002,831 - ECD_02863 0.35 +0.6
3,002,852 - ECD_02863 0.36 -0.8
3,002,864 - ECD_02863 0.37 -0.0
3,002,875 + ECD_02863 0.38 +0.5
3,002,876 - ECD_02863 0.38 +0.6
3,002,903 + ECD_02863 0.40 -0.0
3,002,903 + ECD_02863 0.40 -0.2
3,002,988 + ECD_02863 0.45 +0.2
3,002,988 + ECD_02863 0.45 -0.4
3,002,989 - ECD_02863 0.46 +0.3
3,002,989 - ECD_02863 0.46 -0.0
3,002,989 - ECD_02863 0.46 -0.4
3,003,026 - ECD_02863 0.48 +0.5
3,003,050 - ECD_02863 0.50 -0.1
3,003,172 + ECD_02863 0.58 -0.6
3,003,172 + ECD_02863 0.58 -0.3
3,003,172 + ECD_02863 0.58 -0.7
3,003,173 - ECD_02863 0.58 +0.7
3,003,173 - ECD_02863 0.58 -0.0
3,003,238 + ECD_02863 0.62 -0.0
3,003,238 + ECD_02863 0.62 -0.9
3,003,238 + ECD_02863 0.62 -0.6
3,003,284 + ECD_02863 0.65 -0.2
3,003,366 - ECD_02863 0.71 -0.1
3,003,491 - ECD_02863 0.79 +0.3
3,003,572 - ECD_02863 0.84 -0.6
3,003,585 + ECD_02863 0.85 +0.2
3,003,586 - ECD_02863 0.85 +0.2
3,003,595 + ECD_02863 0.86 -0.8
3,003,596 - ECD_02863 0.86 +0.9
3,003,675 + +0.6
3,003,759 - +0.4
3,004,087 - -1.4
3,004,096 - +1.1
3,004,204 + -0.3
3,004,204 + +0.9
3,004,204 + +0.4
3,004,205 - -1.1
3,004,205 - -0.9
3,004,205 - -1.2
3,004,218 + -0.1
3,004,219 - -0.4
3,004,219 - +0.6
3,004,257 + -0.2
3,004,257 + -1.4
3,004,724 - ECD_02864 0.34 -0.7
3,004,789 + ECD_02864 0.37 +0.1

Or see this region's nucleotide sequence