Strain Fitness in Escherichia coli BL21 around ECD_02742

Experiment: Control_TnJ

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02740 and ECD_02741 are separated by 25 nucleotidesECD_02741 and ECD_02742 are separated by 167 nucleotidesECD_02742 and ECD_02743 are separated by 299 nucleotides ECD_02740: ECD_02740 - proline aminopeptidase P II, at 2,884,373 to 2,885,698 _02740 ECD_02741: ECD_02741 - UPF0149 family protein, at 2,885,724 to 2,886,302 _02741 ECD_02742: ECD_02742 - FtsZ stabilizer, at 2,886,470 to 2,886,799 _02742 ECD_02743: ECD_02743 - 5-formyltetrahydrofolate cyclo-ligase family protein, at 2,887,099 to 2,887,647 _02743 Position (kb) 2886 2887Strain fitness (log2 ratio) -2 -1 0 1 2at 2885.699 kb on - strandat 2885.730 kb on + strandat 2885.730 kb on + strandat 2885.731 kb on - strandat 2885.731 kb on - strandat 2885.731 kb on - strandat 2885.731 kb on - strandat 2885.746 kb on - strandat 2885.774 kb on + strandat 2885.775 kb on - strandat 2885.813 kb on - strand, within ECD_02741at 2885.813 kb on - strand, within ECD_02741at 2885.870 kb on - strand, within ECD_02741at 2885.889 kb on - strand, within ECD_02741at 2885.904 kb on - strand, within ECD_02741at 2886.038 kb on - strand, within ECD_02741at 2886.038 kb on - strand, within ECD_02741at 2886.038 kb on - strand, within ECD_02741at 2886.156 kb on + strand, within ECD_02741at 2886.156 kb on + strand, within ECD_02741at 2886.157 kb on - strand, within ECD_02741at 2886.192 kb on + strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.193 kb on - strand, within ECD_02741at 2886.194 kb on - strand, within ECD_02741at 2886.208 kb on - strand, within ECD_02741at 2886.208 kb on - strand, within ECD_02741at 2886.208 kb on - strand, within ECD_02741at 2886.275 kb on - strandat 2886.295 kb on - strandat 2886.295 kb on - strandat 2886.295 kb on - strandat 2886.296 kb on + strandat 2886.297 kb on - strandat 2886.297 kb on - strandat 2886.297 kb on - strandat 2886.297 kb on - strandat 2886.297 kb on - strandat 2886.297 kb on - strandat 2886.297 kb on - strandat 2886.302 kb on + strandat 2886.302 kb on + strandat 2886.302 kb on + strandat 2886.302 kb on + strandat 2886.302 kb on + strandat 2886.302 kb on + strandat 2886.302 kb on + strandat 2886.303 kb on - strandat 2886.303 kb on - strandat 2886.303 kb on - strandat 2886.303 kb on - strandat 2886.303 kb on - strandat 2886.303 kb on - strandat 2886.303 kb on - strandat 2886.329 kb on - strandat 2886.329 kb on - strandat 2886.329 kb on - strandat 2886.329 kb on - strandat 2886.329 kb on - strandat 2886.337 kb on + strandat 2886.338 kb on - strandat 2886.338 kb on - strandat 2886.338 kb on - strandat 2886.342 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.399 kb on + strandat 2886.400 kb on - strandat 2886.604 kb on + strand, within ECD_02742at 2886.604 kb on + strand, within ECD_02742at 2886.616 kb on + strand, within ECD_02742at 2886.656 kb on + strand, within ECD_02742at 2886.657 kb on - strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.738 kb on + strand, within ECD_02742at 2886.750 kb on + strand, within ECD_02742at 2886.750 kb on + strand, within ECD_02742at 2886.781 kb on + strandat 2886.812 kb on + strandat 2886.820 kb on + strandat 2886.820 kb on + strandat 2886.820 kb on + strandat 2886.820 kb on + strandat 2886.820 kb on + strandat 2886.820 kb on + strandat 2886.891 kb on + strandat 2887.030 kb on + strandat 2887.030 kb on + strandat 2887.030 kb on + strandat 2887.030 kb on + strandat 2887.055 kb on + strandat 2887.256 kb on + strand, within ECD_02743at 2887.256 kb on + strand, within ECD_02743at 2887.256 kb on + strand, within ECD_02743at 2887.256 kb on + strand, within ECD_02743at 2887.286 kb on + strand, within ECD_02743at 2887.288 kb on + strand, within ECD_02743at 2887.288 kb on + strand, within ECD_02743at 2887.465 kb on + strand, within ECD_02743at 2887.498 kb on + strand, within ECD_02743at 2887.511 kb on + strand, within ECD_02743at 2887.529 kb on - strand, within ECD_02743at 2887.620 kb on + strandat 2887.696 kb on + strandat 2887.696 kb on + strandat 2887.697 kb on - strandat 2887.708 kb on + strandat 2887.749 kb on + strandat 2887.749 kb on + strandat 2887.752 kb on + strandat 2887.753 kb on - strandat 2887.753 kb on - strandat 2887.753 kb on - strandat 2887.766 kb on + strandat 2887.772 kb on + strandat 2887.772 kb on + strandat 2887.772 kb on + strandat 2887.772 kb on + strandat 2887.772 kb on + strandat 2887.778 kb on + strandat 2887.778 kb on + strandat 2887.778 kb on + strandat 2887.778 kb on + strandat 2887.778 kb on + strandat 2887.779 kb on - strandat 2887.779 kb on - strandat 2887.787 kb on + strandat 2887.787 kb on + strandat 2887.787 kb on + strandat 2887.787 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
remove
2,885,699 - -0.1
2,885,730 + -2.2
2,885,730 + -1.1
2,885,731 - -0.3
2,885,731 - +0.2
2,885,731 - +0.5
2,885,731 - -0.7
2,885,746 - -0.4
2,885,774 + +0.5
2,885,775 - -1.3
2,885,813 - ECD_02741 0.15 +0.0
2,885,813 - ECD_02741 0.15 +1.0
2,885,870 - ECD_02741 0.25 +0.2
2,885,889 - ECD_02741 0.28 -0.8
2,885,904 - ECD_02741 0.31 -0.1
2,886,038 - ECD_02741 0.54 -0.2
2,886,038 - ECD_02741 0.54 +0.1
2,886,038 - ECD_02741 0.54 -0.8
2,886,156 + ECD_02741 0.75 -0.5
2,886,156 + ECD_02741 0.75 +0.5
2,886,157 - ECD_02741 0.75 -0.1
2,886,192 + ECD_02741 0.81 -0.5
2,886,193 - ECD_02741 0.81 +0.8
2,886,193 - ECD_02741 0.81 +0.1
2,886,193 - ECD_02741 0.81 -1.2
2,886,193 - ECD_02741 0.81 -0.5
2,886,193 - ECD_02741 0.81 +0.1
2,886,193 - ECD_02741 0.81 +0.1
2,886,193 - ECD_02741 0.81 +1.5
2,886,193 - ECD_02741 0.81 +0.0
2,886,193 - ECD_02741 0.81 -0.1
2,886,194 - ECD_02741 0.81 +0.5
2,886,208 - ECD_02741 0.84 +1.5
2,886,208 - ECD_02741 0.84 +0.1
2,886,208 - ECD_02741 0.84 -0.6
2,886,275 - +2.5
2,886,295 - +0.7
2,886,295 - -1.4
2,886,295 - -1.0
2,886,296 + -0.2
2,886,297 - -0.1
2,886,297 - +0.7
2,886,297 - -0.6
2,886,297 - +0.7
2,886,297 - -0.1
2,886,297 - +1.5
2,886,297 - +0.2
2,886,302 + -1.0
2,886,302 + -0.1
2,886,302 + +0.8
2,886,302 + +0.5
2,886,302 + -0.3
2,886,302 + -1.8
2,886,302 + +0.3
2,886,303 - +1.2
2,886,303 - -0.2
2,886,303 - -1.4
2,886,303 - +0.2
2,886,303 - -0.2
2,886,303 - -0.1
2,886,303 - +0.4
2,886,329 - -0.2
2,886,329 - +0.5
2,886,329 - -0.2
2,886,329 - +0.6
2,886,329 - -1.4
2,886,337 + +0.9
2,886,338 - +0.4
2,886,338 - +0.5
2,886,338 - -0.5
2,886,342 + +0.5
2,886,399 + +1.1
2,886,399 + -0.9
2,886,399 + +1.5
2,886,399 + -1.4
2,886,399 + +1.1
2,886,399 + -0.1
2,886,399 + -1.5
2,886,399 + +0.2
2,886,400 - -1.3
2,886,604 + ECD_02742 0.41 -1.0
2,886,604 + ECD_02742 0.41 -0.5
2,886,616 + ECD_02742 0.44 +0.3
2,886,656 + ECD_02742 0.56 -1.4
2,886,657 - ECD_02742 0.57 +2.1
2,886,738 + ECD_02742 0.81 -2.0
2,886,738 + ECD_02742 0.81 +0.5
2,886,738 + ECD_02742 0.81 -0.3
2,886,738 + ECD_02742 0.81 -0.1
2,886,738 + ECD_02742 0.81 -1.4
2,886,738 + ECD_02742 0.81 -2.3
2,886,738 + ECD_02742 0.81 -0.3
2,886,750 + ECD_02742 0.85 -0.7
2,886,750 + ECD_02742 0.85 +0.3
2,886,781 + -0.2
2,886,812 + +0.6
2,886,820 + +0.5
2,886,820 + +0.1
2,886,820 + -2.1
2,886,820 + -0.6
2,886,820 + +0.2
2,886,820 + -0.4
2,886,891 + +0.1
2,887,030 + -0.3
2,887,030 + +0.5
2,887,030 + -0.4
2,887,030 + +0.2
2,887,055 + -2.1
2,887,256 + ECD_02743 0.29 +0.7
2,887,256 + ECD_02743 0.29 -1.5
2,887,256 + ECD_02743 0.29 -0.4
2,887,256 + ECD_02743 0.29 -0.2
2,887,286 + ECD_02743 0.34 -0.6
2,887,288 + ECD_02743 0.34 +0.4
2,887,288 + ECD_02743 0.34 +0.0
2,887,465 + ECD_02743 0.67 +0.2
2,887,498 + ECD_02743 0.73 -1.5
2,887,511 + ECD_02743 0.75 +0.1
2,887,529 - ECD_02743 0.78 +0.8
2,887,620 + +1.2
2,887,696 + +0.4
2,887,696 + -0.2
2,887,697 - -0.8
2,887,708 + +0.8
2,887,749 + -0.6
2,887,749 + +0.2
2,887,752 + -0.3
2,887,753 - -2.1
2,887,753 - +0.7
2,887,753 - +0.1
2,887,766 + +0.1
2,887,772 + +1.0
2,887,772 + +0.6
2,887,772 + +1.5
2,887,772 + +1.0
2,887,772 + -0.6
2,887,778 + -0.3
2,887,778 + -0.7
2,887,778 + +0.2
2,887,778 + -0.5
2,887,778 + -1.5
2,887,779 - +0.5
2,887,779 - +0.5
2,887,787 + +1.5
2,887,787 + -0.0
2,887,787 + -1.5
2,887,787 + -0.2

Or see this region's nucleotide sequence