Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02556 and ECD_02557 are separated by 66 nucleotides ECD_02557 and ECD_02558 overlap by 8 nucleotides ECD_02558 and ECD_02559 overlap by 4 nucleotides
ECD_02556: ECD_02556 - sorbitol-responsive srl operon transcriptional activator, at 2,668,588 to 2,668,947
_02556
ECD_02557: ECD_02557 - sorbitol-inducible srl operon transcriptional repressor, at 2,669,014 to 2,669,787
_02557
ECD_02558: ECD_02558 - D-arabinose 5-phosphate isomerase, at 2,669,780 to 2,670,745
_02558
ECD_02559: ECD_02559 - anaerobic nitric oxide reductase DNA-binding transcriptional activator, at 2,670,742 to 2,672,256
_02559
Position (kb)
2669
2670
2671 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2668.797 kb on + strand, within ECD_02556 at 2668.869 kb on - strand, within ECD_02556 at 2668.916 kb on + strand at 2668.917 kb on - strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.963 kb on + strand at 2668.964 kb on - strand at 2668.964 kb on - strand at 2668.979 kb on + strand at 2668.994 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.050 kb on + strand at 2669.067 kb on + strand at 2669.095 kb on + strand, within ECD_02557 at 2669.095 kb on + strand, within ECD_02557 at 2669.095 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.166 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.170 kb on + strand, within ECD_02557 at 2669.190 kb on + strand, within ECD_02557 at 2669.190 kb on + strand, within ECD_02557 at 2669.190 kb on + strand, within ECD_02557 at 2669.191 kb on - strand, within ECD_02557 at 2669.212 kb on - strand, within ECD_02557 at 2669.220 kb on + strand, within ECD_02557 at 2669.220 kb on + strand, within ECD_02557 at 2669.277 kb on + strand, within ECD_02557 at 2669.277 kb on + strand, within ECD_02557 at 2669.352 kb on + strand, within ECD_02557 at 2669.352 kb on + strand, within ECD_02557 at 2669.352 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.355 kb on + strand, within ECD_02557 at 2669.385 kb on + strand, within ECD_02557 at 2669.385 kb on + strand, within ECD_02557 at 2669.399 kb on + strand, within ECD_02557 at 2669.424 kb on + strand, within ECD_02557 at 2669.424 kb on + strand, within ECD_02557 at 2669.424 kb on + strand, within ECD_02557 at 2669.425 kb on - strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.578 kb on + strand, within ECD_02557 at 2669.579 kb on - strand, within ECD_02557 at 2669.581 kb on - strand, within ECD_02557 at 2669.589 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.666 kb on + strand, within ECD_02557 at 2669.667 kb on - strand, within ECD_02557 at 2669.712 kb on + strand at 2669.793 kb on + strand at 2669.793 kb on + strand at 2669.793 kb on + strand at 2669.793 kb on + strand at 2669.818 kb on - strand at 2669.887 kb on + strand, within ECD_02558 at 2669.951 kb on - strand, within ECD_02558 at 2670.064 kb on + strand, within ECD_02558 at 2670.064 kb on + strand, within ECD_02558 at 2670.064 kb on + strand, within ECD_02558 at 2670.064 kb on + strand, within ECD_02558 at 2670.064 kb on + strand, within ECD_02558 at 2670.065 kb on - strand, within ECD_02558 at 2670.065 kb on - strand, within ECD_02558 at 2670.072 kb on - strand, within ECD_02558 at 2670.072 kb on - strand, within ECD_02558 at 2670.103 kb on + strand, within ECD_02558 at 2670.121 kb on + strand, within ECD_02558 at 2670.121 kb on + strand, within ECD_02558 at 2670.122 kb on - strand, within ECD_02558 at 2670.122 kb on - strand, within ECD_02558 at 2670.127 kb on + strand, within ECD_02558 at 2670.196 kb on + strand, within ECD_02558 at 2670.197 kb on - strand, within ECD_02558 at 2670.204 kb on + strand, within ECD_02558 at 2670.204 kb on + strand, within ECD_02558 at 2670.205 kb on - strand, within ECD_02558 at 2670.256 kb on + strand, within ECD_02558 at 2670.257 kb on - strand, within ECD_02558 at 2670.257 kb on - strand, within ECD_02558 at 2670.311 kb on - strand, within ECD_02558 at 2670.311 kb on - strand, within ECD_02558 at 2670.370 kb on + strand, within ECD_02558 at 2670.371 kb on - strand, within ECD_02558 at 2670.371 kb on - strand, within ECD_02558 at 2670.483 kb on + strand, within ECD_02558 at 2670.483 kb on + strand, within ECD_02558 at 2670.483 kb on + strand, within ECD_02558 at 2670.484 kb on - strand, within ECD_02558 at 2670.504 kb on + strand, within ECD_02558 at 2670.504 kb on + strand, within ECD_02558 at 2670.504 kb on + strand, within ECD_02558 at 2670.504 kb on + strand, within ECD_02558 at 2670.504 kb on + strand, within ECD_02558 at 2670.505 kb on - strand, within ECD_02558 at 2670.532 kb on - strand, within ECD_02558 at 2670.532 kb on - strand, within ECD_02558 at 2670.708 kb on + strand at 2670.709 kb on - strand at 2670.739 kb on + strand at 2670.739 kb on + strand at 2670.740 kb on - strand at 2670.740 kb on - strand at 2670.743 kb on + strand at 2670.743 kb on + strand at 2670.743 kb on + strand at 2670.743 kb on + strand at 2670.743 kb on + strand at 2670.743 kb on + strand at 2670.744 kb on - strand at 2670.855 kb on + strand at 2670.856 kb on - strand at 2671.013 kb on - strand, within ECD_02559 at 2671.013 kb on - strand, within ECD_02559 at 2671.026 kb on + strand, within ECD_02559 at 2671.026 kb on + strand, within ECD_02559 at 2671.027 kb on - strand, within ECD_02559 at 2671.027 kb on - strand, within ECD_02559 at 2671.027 kb on - strand, within ECD_02559 at 2671.027 kb on - strand, within ECD_02559 at 2671.065 kb on - strand, within ECD_02559 at 2671.065 kb on - strand, within ECD_02559 at 2671.065 kb on - strand, within ECD_02559 at 2671.065 kb on - strand, within ECD_02559 at 2671.097 kb on - strand, within ECD_02559 at 2671.097 kb on - strand, within ECD_02559 at 2671.097 kb on - strand, within ECD_02559 at 2671.097 kb on - strand, within ECD_02559 at 2671.099 kb on + strand, within ECD_02559 at 2671.100 kb on - strand, within ECD_02559 at 2671.100 kb on - strand, within ECD_02559 at 2671.100 kb on - strand, within ECD_02559 at 2671.344 kb on - strand, within ECD_02559 at 2671.344 kb on - strand, within ECD_02559 at 2671.344 kb on - strand, within ECD_02559 at 2671.450 kb on - strand, within ECD_02559 at 2671.450 kb on - strand, within ECD_02559 at 2671.450 kb on - strand, within ECD_02559 at 2671.464 kb on + strand, within ECD_02559 at 2671.464 kb on + strand, within ECD_02559 at 2671.536 kb on - strand, within ECD_02559
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 2,668,797 + ECD_02556 0.58 -0.1 2,668,869 - ECD_02556 0.78 -0.4 2,668,916 + -1.6 2,668,917 - +0.4 2,668,963 + -0.0 2,668,963 + -0.3 2,668,963 + +0.2 2,668,963 + +0.4 2,668,963 + +0.1 2,668,964 - -0.2 2,668,964 - +0.1 2,668,979 + +1.1 2,668,994 + -1.2 2,669,050 + +0.0 2,669,050 + -0.3 2,669,050 + -1.7 2,669,050 + +1.4 2,669,050 + +1.2 2,669,067 + -0.3 2,669,095 + ECD_02557 0.10 +0.4 2,669,095 + ECD_02557 0.10 -1.7 2,669,095 + ECD_02557 0.10 -1.2 2,669,166 + ECD_02557 0.20 -0.9 2,669,166 + ECD_02557 0.20 -0.4 2,669,166 + ECD_02557 0.20 -0.3 2,669,166 + ECD_02557 0.20 -1.0 2,669,166 + ECD_02557 0.20 -0.4 2,669,170 + ECD_02557 0.20 +0.5 2,669,170 + ECD_02557 0.20 -1.8 2,669,170 + ECD_02557 0.20 +1.4 2,669,170 + ECD_02557 0.20 -0.1 2,669,170 + ECD_02557 0.20 -2.4 2,669,190 + ECD_02557 0.23 +0.8 2,669,190 + ECD_02557 0.23 -0.2 2,669,190 + ECD_02557 0.23 -0.4 2,669,191 - ECD_02557 0.23 -0.6 2,669,212 - ECD_02557 0.26 +0.4 2,669,220 + ECD_02557 0.27 -1.2 2,669,220 + ECD_02557 0.27 +0.1 2,669,277 + ECD_02557 0.34 -1.9 2,669,277 + ECD_02557 0.34 +0.1 2,669,352 + ECD_02557 0.44 +0.6 2,669,352 + ECD_02557 0.44 +0.4 2,669,352 + ECD_02557 0.44 -0.6 2,669,355 + ECD_02557 0.44 -0.3 2,669,355 + ECD_02557 0.44 -0.3 2,669,355 + ECD_02557 0.44 +0.7 2,669,355 + ECD_02557 0.44 +0.2 2,669,355 + ECD_02557 0.44 +1.4 2,669,355 + ECD_02557 0.44 -0.7 2,669,355 + ECD_02557 0.44 -1.0 2,669,385 + ECD_02557 0.48 -2.6 2,669,385 + ECD_02557 0.48 -0.4 2,669,399 + ECD_02557 0.50 -0.4 2,669,424 + ECD_02557 0.53 -2.5 2,669,424 + ECD_02557 0.53 -0.3 2,669,424 + ECD_02557 0.53 -0.3 2,669,425 - ECD_02557 0.53 -0.3 2,669,578 + ECD_02557 0.73 -0.3 2,669,578 + ECD_02557 0.73 +1.4 2,669,578 + ECD_02557 0.73 -2.2 2,669,578 + ECD_02557 0.73 +0.8 2,669,578 + ECD_02557 0.73 -0.6 2,669,578 + ECD_02557 0.73 -0.4 2,669,579 - ECD_02557 0.73 -1.6 2,669,581 - ECD_02557 0.73 +1.0 2,669,589 + ECD_02557 0.74 -0.8 2,669,666 + ECD_02557 0.84 -0.2 2,669,666 + ECD_02557 0.84 -1.0 2,669,666 + ECD_02557 0.84 -0.6 2,669,666 + ECD_02557 0.84 -0.4 2,669,666 + ECD_02557 0.84 +0.8 2,669,666 + ECD_02557 0.84 -1.3 2,669,666 + ECD_02557 0.84 -1.3 2,669,666 + ECD_02557 0.84 -1.3 2,669,666 + ECD_02557 0.84 -0.2 2,669,666 + ECD_02557 0.84 +0.1 2,669,666 + ECD_02557 0.84 +0.2 2,669,666 + ECD_02557 0.84 -0.9 2,669,666 + ECD_02557 0.84 -1.0 2,669,666 + ECD_02557 0.84 -0.2 2,669,666 + ECD_02557 0.84 -1.3 2,669,666 + ECD_02557 0.84 -0.7 2,669,667 - ECD_02557 0.84 -0.6 2,669,712 + -0.6 2,669,793 + +0.4 2,669,793 + +0.6 2,669,793 + +0.0 2,669,793 + -0.4 2,669,818 - -0.2 2,669,887 + ECD_02558 0.11 +0.4 2,669,951 - ECD_02558 0.18 +0.1 2,670,064 + ECD_02558 0.29 -0.7 2,670,064 + ECD_02558 0.29 -0.1 2,670,064 + ECD_02558 0.29 -0.2 2,670,064 + ECD_02558 0.29 +0.3 2,670,064 + ECD_02558 0.29 +0.8 2,670,065 - ECD_02558 0.30 +0.4 2,670,065 - ECD_02558 0.30 +0.8 2,670,072 - ECD_02558 0.30 -0.3 2,670,072 - ECD_02558 0.30 +0.8 2,670,103 + ECD_02558 0.33 +0.3 2,670,121 + ECD_02558 0.35 -0.1 2,670,121 + ECD_02558 0.35 +0.1 2,670,122 - ECD_02558 0.35 +0.2 2,670,122 - ECD_02558 0.35 +0.1 2,670,127 + ECD_02558 0.36 +0.3 2,670,196 + ECD_02558 0.43 +0.4 2,670,197 - ECD_02558 0.43 +0.2 2,670,204 + ECD_02558 0.44 -0.7 2,670,204 + ECD_02558 0.44 -1.9 2,670,205 - ECD_02558 0.44 -2.5 2,670,256 + ECD_02558 0.49 +0.2 2,670,257 - ECD_02558 0.49 +1.0 2,670,257 - ECD_02558 0.49 +0.1 2,670,311 - ECD_02558 0.55 +1.4 2,670,311 - ECD_02558 0.55 -1.6 2,670,370 + ECD_02558 0.61 +0.4 2,670,371 - ECD_02558 0.61 +0.0 2,670,371 - ECD_02558 0.61 -0.2 2,670,483 + ECD_02558 0.73 -0.6 2,670,483 + ECD_02558 0.73 +0.4 2,670,483 + ECD_02558 0.73 -0.6 2,670,484 - ECD_02558 0.73 +1.2 2,670,504 + ECD_02558 0.75 +0.4 2,670,504 + ECD_02558 0.75 -0.1 2,670,504 + ECD_02558 0.75 +1.8 2,670,504 + ECD_02558 0.75 -0.9 2,670,504 + ECD_02558 0.75 +0.8 2,670,505 - ECD_02558 0.75 +1.2 2,670,532 - ECD_02558 0.78 +1.4 2,670,532 - ECD_02558 0.78 +0.6 2,670,708 + +0.0 2,670,709 - +0.4 2,670,739 + -0.0 2,670,739 + -0.5 2,670,740 - -0.3 2,670,740 - -0.3 2,670,743 + +0.6 2,670,743 + -1.4 2,670,743 + +1.7 2,670,743 + +0.5 2,670,743 + -0.1 2,670,743 + +0.6 2,670,744 - +0.8 2,670,855 + +0.3 2,670,856 - -0.5 2,671,013 - ECD_02559 0.18 -0.1 2,671,013 - ECD_02559 0.18 -1.6 2,671,026 + ECD_02559 0.19 -1.9 2,671,026 + ECD_02559 0.19 -0.5 2,671,027 - ECD_02559 0.19 +0.1 2,671,027 - ECD_02559 0.19 +0.3 2,671,027 - ECD_02559 0.19 -1.7 2,671,027 - ECD_02559 0.19 -0.2 2,671,065 - ECD_02559 0.21 -0.2 2,671,065 - ECD_02559 0.21 +0.6 2,671,065 - ECD_02559 0.21 +0.8 2,671,065 - ECD_02559 0.21 -0.4 2,671,097 - ECD_02559 0.23 -0.3 2,671,097 - ECD_02559 0.23 +0.9 2,671,097 - ECD_02559 0.23 -0.1 2,671,097 - ECD_02559 0.23 -0.1 2,671,099 + ECD_02559 0.24 -0.6 2,671,100 - ECD_02559 0.24 -0.4 2,671,100 - ECD_02559 0.24 +1.4 2,671,100 - ECD_02559 0.24 -1.4 2,671,344 - ECD_02559 0.40 +0.0 2,671,344 - ECD_02559 0.40 +0.2 2,671,344 - ECD_02559 0.40 +0.4 2,671,450 - ECD_02559 0.47 +0.5 2,671,450 - ECD_02559 0.47 -0.2 2,671,450 - ECD_02559 0.47 +0.4 2,671,464 + ECD_02559 0.48 +0.1 2,671,464 + ECD_02559 0.48 -0.9 2,671,536 - ECD_02559 0.52 -0.0
Or see this region's nucleotide sequence