Strain Fitness in Escherichia coli BL21 around ECD_02558

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02556 and ECD_02557 are separated by 66 nucleotidesECD_02557 and ECD_02558 overlap by 8 nucleotidesECD_02558 and ECD_02559 overlap by 4 nucleotides ECD_02556: ECD_02556 - sorbitol-responsive srl operon transcriptional activator, at 2,668,588 to 2,668,947 _02556 ECD_02557: ECD_02557 - sorbitol-inducible srl operon transcriptional repressor, at 2,669,014 to 2,669,787 _02557 ECD_02558: ECD_02558 - D-arabinose 5-phosphate isomerase, at 2,669,780 to 2,670,745 _02558 ECD_02559: ECD_02559 - anaerobic nitric oxide reductase DNA-binding transcriptional activator, at 2,670,742 to 2,672,256 _02559 Position (kb) 2669 2670 2671Strain fitness (log2 ratio) -2 -1 0 1 2at 2668.797 kb on + strand, within ECD_02556at 2668.869 kb on - strand, within ECD_02556at 2668.916 kb on + strandat 2668.917 kb on - strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.963 kb on + strandat 2668.964 kb on - strandat 2668.964 kb on - strandat 2668.979 kb on + strandat 2668.994 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.050 kb on + strandat 2669.067 kb on + strandat 2669.095 kb on + strand, within ECD_02557at 2669.095 kb on + strand, within ECD_02557at 2669.095 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.166 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.170 kb on + strand, within ECD_02557at 2669.190 kb on + strand, within ECD_02557at 2669.190 kb on + strand, within ECD_02557at 2669.190 kb on + strand, within ECD_02557at 2669.191 kb on - strand, within ECD_02557at 2669.212 kb on - strand, within ECD_02557at 2669.220 kb on + strand, within ECD_02557at 2669.220 kb on + strand, within ECD_02557at 2669.277 kb on + strand, within ECD_02557at 2669.277 kb on + strand, within ECD_02557at 2669.352 kb on + strand, within ECD_02557at 2669.352 kb on + strand, within ECD_02557at 2669.352 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.355 kb on + strand, within ECD_02557at 2669.385 kb on + strand, within ECD_02557at 2669.385 kb on + strand, within ECD_02557at 2669.399 kb on + strand, within ECD_02557at 2669.424 kb on + strand, within ECD_02557at 2669.424 kb on + strand, within ECD_02557at 2669.424 kb on + strand, within ECD_02557at 2669.425 kb on - strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.578 kb on + strand, within ECD_02557at 2669.579 kb on - strand, within ECD_02557at 2669.581 kb on - strand, within ECD_02557at 2669.589 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.666 kb on + strand, within ECD_02557at 2669.667 kb on - strand, within ECD_02557at 2669.712 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.818 kb on - strandat 2669.887 kb on + strand, within ECD_02558at 2669.951 kb on - strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.065 kb on - strand, within ECD_02558at 2670.065 kb on - strand, within ECD_02558at 2670.072 kb on - strand, within ECD_02558at 2670.072 kb on - strand, within ECD_02558at 2670.103 kb on + strand, within ECD_02558at 2670.121 kb on + strand, within ECD_02558at 2670.121 kb on + strand, within ECD_02558at 2670.122 kb on - strand, within ECD_02558at 2670.122 kb on - strand, within ECD_02558at 2670.127 kb on + strand, within ECD_02558at 2670.196 kb on + strand, within ECD_02558at 2670.197 kb on - strand, within ECD_02558at 2670.204 kb on + strand, within ECD_02558at 2670.204 kb on + strand, within ECD_02558at 2670.205 kb on - strand, within ECD_02558at 2670.256 kb on + strand, within ECD_02558at 2670.257 kb on - strand, within ECD_02558at 2670.257 kb on - strand, within ECD_02558at 2670.311 kb on - strand, within ECD_02558at 2670.311 kb on - strand, within ECD_02558at 2670.370 kb on + strand, within ECD_02558at 2670.371 kb on - strand, within ECD_02558at 2670.371 kb on - strand, within ECD_02558at 2670.483 kb on + strand, within ECD_02558at 2670.483 kb on + strand, within ECD_02558at 2670.483 kb on + strand, within ECD_02558at 2670.484 kb on - strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.505 kb on - strand, within ECD_02558at 2670.532 kb on - strand, within ECD_02558at 2670.532 kb on - strand, within ECD_02558at 2670.708 kb on + strandat 2670.709 kb on - strandat 2670.739 kb on + strandat 2670.739 kb on + strandat 2670.740 kb on - strandat 2670.740 kb on - strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.744 kb on - strandat 2670.855 kb on + strandat 2670.856 kb on - strandat 2671.013 kb on - strand, within ECD_02559at 2671.013 kb on - strand, within ECD_02559at 2671.026 kb on + strand, within ECD_02559at 2671.026 kb on + strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.099 kb on + strand, within ECD_02559at 2671.100 kb on - strand, within ECD_02559at 2671.100 kb on - strand, within ECD_02559at 2671.100 kb on - strand, within ECD_02559at 2671.344 kb on - strand, within ECD_02559at 2671.344 kb on - strand, within ECD_02559at 2671.344 kb on - strand, within ECD_02559at 2671.450 kb on - strand, within ECD_02559at 2671.450 kb on - strand, within ECD_02559at 2671.450 kb on - strand, within ECD_02559at 2671.464 kb on + strand, within ECD_02559at 2671.464 kb on + strand, within ECD_02559at 2671.536 kb on - strand, within ECD_02559

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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2,668,797 + ECD_02556 0.58 -0.1
2,668,869 - ECD_02556 0.78 -0.4
2,668,916 + -1.6
2,668,917 - +0.4
2,668,963 + -0.0
2,668,963 + -0.3
2,668,963 + +0.2
2,668,963 + +0.4
2,668,963 + +0.1
2,668,964 - -0.2
2,668,964 - +0.1
2,668,979 + +1.1
2,668,994 + -1.2
2,669,050 + +0.0
2,669,050 + -0.3
2,669,050 + -1.7
2,669,050 + +1.4
2,669,050 + +1.2
2,669,067 + -0.3
2,669,095 + ECD_02557 0.10 +0.4
2,669,095 + ECD_02557 0.10 -1.7
2,669,095 + ECD_02557 0.10 -1.2
2,669,166 + ECD_02557 0.20 -0.9
2,669,166 + ECD_02557 0.20 -0.4
2,669,166 + ECD_02557 0.20 -0.3
2,669,166 + ECD_02557 0.20 -1.0
2,669,166 + ECD_02557 0.20 -0.4
2,669,170 + ECD_02557 0.20 +0.5
2,669,170 + ECD_02557 0.20 -1.8
2,669,170 + ECD_02557 0.20 +1.4
2,669,170 + ECD_02557 0.20 -0.1
2,669,170 + ECD_02557 0.20 -2.4
2,669,190 + ECD_02557 0.23 +0.8
2,669,190 + ECD_02557 0.23 -0.2
2,669,190 + ECD_02557 0.23 -0.4
2,669,191 - ECD_02557 0.23 -0.6
2,669,212 - ECD_02557 0.26 +0.4
2,669,220 + ECD_02557 0.27 -1.2
2,669,220 + ECD_02557 0.27 +0.1
2,669,277 + ECD_02557 0.34 -1.9
2,669,277 + ECD_02557 0.34 +0.1
2,669,352 + ECD_02557 0.44 +0.6
2,669,352 + ECD_02557 0.44 +0.4
2,669,352 + ECD_02557 0.44 -0.6
2,669,355 + ECD_02557 0.44 -0.3
2,669,355 + ECD_02557 0.44 -0.3
2,669,355 + ECD_02557 0.44 +0.7
2,669,355 + ECD_02557 0.44 +0.2
2,669,355 + ECD_02557 0.44 +1.4
2,669,355 + ECD_02557 0.44 -0.7
2,669,355 + ECD_02557 0.44 -1.0
2,669,385 + ECD_02557 0.48 -2.6
2,669,385 + ECD_02557 0.48 -0.4
2,669,399 + ECD_02557 0.50 -0.4
2,669,424 + ECD_02557 0.53 -2.5
2,669,424 + ECD_02557 0.53 -0.3
2,669,424 + ECD_02557 0.53 -0.3
2,669,425 - ECD_02557 0.53 -0.3
2,669,578 + ECD_02557 0.73 -0.3
2,669,578 + ECD_02557 0.73 +1.4
2,669,578 + ECD_02557 0.73 -2.2
2,669,578 + ECD_02557 0.73 +0.8
2,669,578 + ECD_02557 0.73 -0.6
2,669,578 + ECD_02557 0.73 -0.4
2,669,579 - ECD_02557 0.73 -1.6
2,669,581 - ECD_02557 0.73 +1.0
2,669,589 + ECD_02557 0.74 -0.8
2,669,666 + ECD_02557 0.84 -0.2
2,669,666 + ECD_02557 0.84 -1.0
2,669,666 + ECD_02557 0.84 -0.6
2,669,666 + ECD_02557 0.84 -0.4
2,669,666 + ECD_02557 0.84 +0.8
2,669,666 + ECD_02557 0.84 -1.3
2,669,666 + ECD_02557 0.84 -1.3
2,669,666 + ECD_02557 0.84 -1.3
2,669,666 + ECD_02557 0.84 -0.2
2,669,666 + ECD_02557 0.84 +0.1
2,669,666 + ECD_02557 0.84 +0.2
2,669,666 + ECD_02557 0.84 -0.9
2,669,666 + ECD_02557 0.84 -1.0
2,669,666 + ECD_02557 0.84 -0.2
2,669,666 + ECD_02557 0.84 -1.3
2,669,666 + ECD_02557 0.84 -0.7
2,669,667 - ECD_02557 0.84 -0.6
2,669,712 + -0.6
2,669,793 + +0.4
2,669,793 + +0.6
2,669,793 + +0.0
2,669,793 + -0.4
2,669,818 - -0.2
2,669,887 + ECD_02558 0.11 +0.4
2,669,951 - ECD_02558 0.18 +0.1
2,670,064 + ECD_02558 0.29 -0.7
2,670,064 + ECD_02558 0.29 -0.1
2,670,064 + ECD_02558 0.29 -0.2
2,670,064 + ECD_02558 0.29 +0.3
2,670,064 + ECD_02558 0.29 +0.8
2,670,065 - ECD_02558 0.30 +0.4
2,670,065 - ECD_02558 0.30 +0.8
2,670,072 - ECD_02558 0.30 -0.3
2,670,072 - ECD_02558 0.30 +0.8
2,670,103 + ECD_02558 0.33 +0.3
2,670,121 + ECD_02558 0.35 -0.1
2,670,121 + ECD_02558 0.35 +0.1
2,670,122 - ECD_02558 0.35 +0.2
2,670,122 - ECD_02558 0.35 +0.1
2,670,127 + ECD_02558 0.36 +0.3
2,670,196 + ECD_02558 0.43 +0.4
2,670,197 - ECD_02558 0.43 +0.2
2,670,204 + ECD_02558 0.44 -0.7
2,670,204 + ECD_02558 0.44 -1.9
2,670,205 - ECD_02558 0.44 -2.5
2,670,256 + ECD_02558 0.49 +0.2
2,670,257 - ECD_02558 0.49 +1.0
2,670,257 - ECD_02558 0.49 +0.1
2,670,311 - ECD_02558 0.55 +1.4
2,670,311 - ECD_02558 0.55 -1.6
2,670,370 + ECD_02558 0.61 +0.4
2,670,371 - ECD_02558 0.61 +0.0
2,670,371 - ECD_02558 0.61 -0.2
2,670,483 + ECD_02558 0.73 -0.6
2,670,483 + ECD_02558 0.73 +0.4
2,670,483 + ECD_02558 0.73 -0.6
2,670,484 - ECD_02558 0.73 +1.2
2,670,504 + ECD_02558 0.75 +0.4
2,670,504 + ECD_02558 0.75 -0.1
2,670,504 + ECD_02558 0.75 +1.8
2,670,504 + ECD_02558 0.75 -0.9
2,670,504 + ECD_02558 0.75 +0.8
2,670,505 - ECD_02558 0.75 +1.2
2,670,532 - ECD_02558 0.78 +1.4
2,670,532 - ECD_02558 0.78 +0.6
2,670,708 + +0.0
2,670,709 - +0.4
2,670,739 + -0.0
2,670,739 + -0.5
2,670,740 - -0.3
2,670,740 - -0.3
2,670,743 + +0.6
2,670,743 + -1.4
2,670,743 + +1.7
2,670,743 + +0.5
2,670,743 + -0.1
2,670,743 + +0.6
2,670,744 - +0.8
2,670,855 + +0.3
2,670,856 - -0.5
2,671,013 - ECD_02559 0.18 -0.1
2,671,013 - ECD_02559 0.18 -1.6
2,671,026 + ECD_02559 0.19 -1.9
2,671,026 + ECD_02559 0.19 -0.5
2,671,027 - ECD_02559 0.19 +0.1
2,671,027 - ECD_02559 0.19 +0.3
2,671,027 - ECD_02559 0.19 -1.7
2,671,027 - ECD_02559 0.19 -0.2
2,671,065 - ECD_02559 0.21 -0.2
2,671,065 - ECD_02559 0.21 +0.6
2,671,065 - ECD_02559 0.21 +0.8
2,671,065 - ECD_02559 0.21 -0.4
2,671,097 - ECD_02559 0.23 -0.3
2,671,097 - ECD_02559 0.23 +0.9
2,671,097 - ECD_02559 0.23 -0.1
2,671,097 - ECD_02559 0.23 -0.1
2,671,099 + ECD_02559 0.24 -0.6
2,671,100 - ECD_02559 0.24 -0.4
2,671,100 - ECD_02559 0.24 +1.4
2,671,100 - ECD_02559 0.24 -1.4
2,671,344 - ECD_02559 0.40 +0.0
2,671,344 - ECD_02559 0.40 +0.2
2,671,344 - ECD_02559 0.40 +0.4
2,671,450 - ECD_02559 0.47 +0.5
2,671,450 - ECD_02559 0.47 -0.2
2,671,450 - ECD_02559 0.47 +0.4
2,671,464 + ECD_02559 0.48 +0.1
2,671,464 + ECD_02559 0.48 -0.9
2,671,536 - ECD_02559 0.52 -0.0

Or see this region's nucleotide sequence